View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8066_low_5 (Length: 477)
Name: NF8066_low_5
Description: NF8066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8066_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 11 - 408
Target Start/End: Complemental strand, 37124296 - 37123900
Alignment:
| Q |
11 |
aatatatatgtaatcgtgaataaatattt-cgaaactaccttgcaaatgacaacaaaataatgcctcgaataaattaagaaagaaaggttgttattggaa |
109 |
Q |
| |
|
||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37124296 |
aatatatatgtaatcgtgaatcaaaattttcgaaactaccttgcaaatgacaacaaaataatgcctcgaatgaattaagaaagaaaggttgttattggaa |
37124197 |
T |
|
| Q |
110 |
attcatgtgcatggatcgatgccttcaatgaggcgaaatatagggtcttttgatagagactgaatgtcccattgctttggtaccttacattcaaatatat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37124196 |
attcatgtgcatggatcgatgccttcaatgaggcgaaatatagggtcttttgatagagactgaatgt-ccattgctttggtaccttacattcaaatatat |
37124098 |
T |
|
| Q |
210 |
taattaagttgttatgacttgcaccaaccattctggaccactagattgcgacggcaaagacaatgcctcattacattttaaatattgtgtaaaaattata |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37124097 |
taattaagttgttatgacttgcaccaaccattctggaccactagattgcgactgcaaagacaatgcctcattacattttaaatattgtgt-aaaattata |
37123999 |
T |
|
| Q |
310 |
tttgtaaagttattgttgggaaatatgcataattttcatccgatgtgaactaaaaattggtaccaagtggnnnnnnnngaaggagaatagagtagtaaa |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37123998 |
tttgtaaagttattgttgggaaatatgcataattttcatccgatgtgaactaaaaattggtaccaagtggaaaaaaaagaaggagaatagagtagtaaa |
37123900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University