View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8066_low_6 (Length: 444)
Name: NF8066_low_6
Description: NF8066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8066_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 359
Target Start/End: Original strand, 30200504 - 30200847
Alignment:
| Q |
16 |
aatatggtcattcaatacatctacatcactcataactcactttctaccggcttgcatgtttcctaactatgacatttgagtgcgtttttgggttctgggt |
115 |
Q |
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| T |
30200504 |
aatatggtcattcaatacatctacatcactcataactcactttctacctgcttgcatgtttcctaactatgacatctgagtgcgtttttgggttctgggt |
30200603 |
T |
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| Q |
116 |
ttaacccctcatttgagaaggagcattgggtatttgtataaattttgtttacactgtaaacgtatagtttctcttaactcaaatttgtataacttaaaaa |
215 |
Q |
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| T |
30200604 |
ttaacccctcatttgagaaggagcattgggtatttgtataaattttgtttccactgtaaacgtatagtttctcttaactcaaatttgtataacttaaaaa |
30200703 |
T |
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| Q |
216 |
tcataatgtaagtacaaccttcattgcaatttaaaatcttagccttaattaacaactctattatgggtttcctttcccttaagaataagcatgttcccta |
315 |
Q |
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| T |
30200704 |
tcataatgtaagtacaaccttcattgcaatttaaaatcttagccttaattaacaactctattatgggtttccttttccttaagaataagcatgttcccta |
30200803 |
T |
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| Q |
316 |
ctttggggtcaacaccctccttatttttaaaagaaatggagttg |
359 |
Q |
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| T |
30200804 |
ctttggggtcaacaccctccttatttttaaaagaaatggagttg |
30200847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 387 - 427
Target Start/End: Original strand, 30200902 - 30200942
Alignment:
| Q |
387 |
atgtatagctttctttaatttgtgtccggatattcttttct |
427 |
Q |
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| T |
30200902 |
atgtatagctttctttaatttgtgtccggatattcttttct |
30200942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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