View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8066_low_7 (Length: 413)

Name: NF8066_low_7
Description: NF8066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8066_low_7
NF8066_low_7
[»] chr6 (25 HSPs)
chr6 (27-227)||(13727317-13727517)
chr6 (27-228)||(21280533-21280734)
chr6 (27-227)||(21479482-21479683)
chr6 (27-232)||(27788603-27788806)
chr6 (27-226)||(33774105-33774305)
chr6 (32-229)||(20711636-20711833)
chr6 (27-227)||(30832443-30832642)
chr6 (27-227)||(17353942-17354142)
chr6 (27-228)||(19737611-19737810)
chr6 (27-227)||(24710914-24711117)
chr6 (27-213)||(28075771-28075960)
chr6 (65-227)||(27314097-27314259)
chr6 (47-225)||(1155767-1155947)
chr6 (27-219)||(235151-235343)
chr6 (27-223)||(34397845-34398039)
chr6 (43-134)||(21183686-21183777)
chr6 (43-139)||(2477590-2477686)
chr6 (43-139)||(6159442-6159538)
chr6 (43-138)||(20611794-20611889)
chr6 (44-122)||(4036953-4037031)
chr6 (60-145)||(30121783-30121868)
chr6 (168-221)||(19987277-19987330)
chr6 (176-229)||(20611924-20611977)
chr6 (27-87)||(19987149-19987209)
chr6 (45-89)||(27994775-27994819)
[»] chr2 (37 HSPs)
chr2 (27-228)||(4505878-4506079)
chr2 (27-224)||(6964991-6965186)
chr2 (27-227)||(3155201-3155401)
chr2 (27-227)||(12337365-12337566)
chr2 (27-227)||(8906996-8907197)
chr2 (27-229)||(29939779-29939980)
chr2 (27-229)||(27506657-27506858)
chr2 (31-227)||(26716116-26716313)
chr2 (27-227)||(3952990-3953188)
chr2 (27-224)||(10762488-10762683)
chr2 (27-229)||(24410420-24410625)
chr2 (27-228)||(7162768-7162968)
chr2 (31-227)||(9046017-9046213)
chr2 (69-223)||(40636164-40636317)
chr2 (59-224)||(34693991-34694155)
chr2 (59-224)||(34716403-34716567)
chr2 (69-221)||(5952642-5952791)
chr2 (114-227)||(1396617-1396730)
chr2 (43-146)||(16097008-16097111)
chr2 (45-146)||(24035544-24035645)
chr2 (43-144)||(38400798-38400899)
chr2 (43-146)||(13800543-13800647)
chr2 (43-146)||(12134039-12134142)
chr2 (43-146)||(21665699-21665802)
chr2 (43-146)||(28425709-28425812)
chr2 (43-145)||(16227368-16227470)
chr2 (99-228)||(8327674-8327802)
chr2 (43-145)||(11912757-11912859)
chr2 (43-146)||(7742132-7742236)
chr2 (43-112)||(37182670-37182739)
chr2 (49-117)||(22727530-22727598)
chr2 (105-212)||(22727391-22727497)
chr2 (66-145)||(42029168-42029247)
chr2 (89-145)||(11952588-11952643)
chr2 (99-138)||(10252472-10252511)
chr2 (159-232)||(37182759-37182832)
chr2 (43-107)||(11952644-11952708)
[»] chr3 (38 HSPs)
chr3 (27-228)||(54619120-54619321)
chr3 (27-228)||(38681010-38681211)
chr3 (27-227)||(36715942-36716143)
chr3 (27-227)||(21582759-21582960)
chr3 (27-227)||(47467672-47467872)
chr3 (27-227)||(27078486-27078687)
chr3 (27-227)||(27084283-27084484)
chr3 (27-226)||(3953816-3954014)
chr3 (27-228)||(8073256-8073455)
chr3 (27-230)||(53149229-53149432)
chr3 (27-228)||(42098789-42098990)
chr3 (27-227)||(34290554-34290754)
chr3 (31-228)||(37168359-37168556)
chr3 (27-228)||(44708465-44708665)
chr3 (27-227)||(43207157-43207355)
chr3 (27-227)||(53506802-53507002)
chr3 (27-227)||(50939152-50939351)
chr3 (47-224)||(36605973-36606149)
chr3 (27-227)||(54407073-54407275)
chr3 (27-228)||(18372467-18372671)
chr3 (38-227)||(50258542-50258731)
chr3 (27-146)||(9878686-9878805)
chr3 (29-110)||(29620423-29620504)
chr3 (27-221)||(48157127-48157310)
chr3 (43-146)||(54574826-54574929)
chr3 (43-138)||(8420330-8420425)
chr3 (60-146)||(26279563-26279649)
chr3 (165-227)||(29620364-29620426)
chr3 (43-138)||(32319162-32319257)
chr3 (43-145)||(25855426-25855527)
chr3 (48-138)||(28689368-28689458)
chr3 (48-145)||(49393099-49393195)
chr3 (159-227)||(48720429-48720497)
chr3 (81-134)||(23641329-23641382)
chr3 (79-146)||(42453444-42453511)
chr3 (43-145)||(789940-790042)
chr3 (45-112)||(29598113-29598179)
chr3 (43-146)||(52374660-52374763)
[»] chr8 (35 HSPs)
chr8 (27-227)||(2952137-2952339)
chr8 (27-224)||(30883314-30883512)
chr8 (27-227)||(3048435-3048635)
chr8 (27-227)||(45475802-45476001)
chr8 (27-224)||(13534609-13534804)
chr8 (27-224)||(13624149-13624344)
chr8 (27-229)||(23606546-23606747)
chr8 (27-227)||(37430076-37430276)
chr8 (27-228)||(23798178-23798379)
chr8 (27-227)||(42600767-42600967)
chr8 (27-216)||(5860671-5860862)
chr8 (27-227)||(10917376-10917575)
chr8 (27-227)||(41879166-41879364)
chr8 (43-146)||(5973106-5973209)
chr8 (43-146)||(7944521-7944624)
chr8 (43-138)||(8102913-8103008)
chr8 (43-146)||(11290185-11290288)
chr8 (43-145)||(39332405-39332507)
chr8 (43-123)||(5942697-5942777)
chr8 (159-227)||(20003728-20003796)
chr8 (43-146)||(15167414-15167517)
chr8 (43-137)||(5721560-5721654)
chr8 (43-212)||(41677106-41677276)
chr8 (43-138)||(15078759-15078854)
chr8 (48-146)||(34789861-34789959)
chr8 (51-146)||(8646215-8646309)
chr8 (43-138)||(25561502-25561595)
chr8 (66-139)||(23941097-23941170)
chr8 (66-145)||(30674403-30674482)
chr8 (46-145)||(34048705-34048806)
chr8 (43-145)||(14509983-14510084)
chr8 (100-145)||(9108551-9108596)
chr8 (99-138)||(34868184-34868223)
chr8 (79-115)||(5757117-5757153)
chr8 (106-146)||(38009151-38009191)
[»] chr5 (47 HSPs)
chr5 (27-219)||(34756289-34756481)
chr5 (27-229)||(27078996-27079199)
chr5 (27-227)||(15480006-15480204)
chr5 (27-223)||(19523184-19523380)
chr5 (27-227)||(36187795-36187994)
chr5 (27-222)||(2274875-2275070)
chr5 (27-229)||(16591988-16592189)
chr5 (27-229)||(38869277-38869478)
chr5 (27-227)||(16198709-16198909)
chr5 (27-224)||(30854314-30854511)
chr5 (27-227)||(9364276-9364476)
chr5 (42-232)||(22986468-22986658)
chr5 (47-227)||(31194528-31194706)
chr5 (27-226)||(28822253-28822457)
chr5 (27-227)||(16799240-16799442)
chr5 (27-229)||(27924067-27924269)
chr5 (27-227)||(7670909-7671118)
chr5 (47-229)||(31881346-31881528)
chr5 (40-183)||(23284022-23284164)
chr5 (31-141)||(40389537-40389647)
chr5 (64-213)||(7338021-7338170)
chr5 (43-145)||(14318382-14318484)
chr5 (45-146)||(36868872-36868973)
chr5 (46-146)||(2024638-2024738)
chr5 (43-146)||(34425904-34426007)
chr5 (43-138)||(2530901-2530996)
chr5 (46-138)||(26718953-26719045)
chr5 (46-138)||(26988697-26988789)
chr5 (43-146)||(1366522-1366625)
chr5 (43-146)||(11242314-11242417)
chr5 (43-146)||(33037781-33037884)
chr5 (43-145)||(2412089-2412191)
chr5 (43-212)||(40794257-40794426)
chr5 (44-138)||(24395741-24395835)
chr5 (45-146)||(10407464-10407565)
chr5 (43-123)||(15639644-15639724)
chr5 (159-227)||(23283943-23284011)
chr5 (51-138)||(10543682-10543769)
chr5 (54-144)||(22648734-22648824)
chr5 (43-145)||(41911614-41911716)
chr5 (162-219)||(40389461-40389518)
chr5 (55-139)||(17344969-17345053)
chr5 (99-146)||(606211-606258)
chr5 (102-146)||(27530543-27530587)
chr5 (103-139)||(22875003-22875039)
chr5 (185-213)||(29143434-29143462)
chr5 (106-146)||(35080766-35080806)
[»] chr7 (38 HSPs)
chr7 (27-232)||(18776678-18776883)
chr7 (27-224)||(8171460-8171656)
chr7 (27-227)||(29077205-29077404)
chr7 (27-227)||(12596207-12596404)
chr7 (27-227)||(20091197-20091398)
chr7 (27-227)||(10329327-10329527)
chr7 (27-229)||(23550986-23551188)
chr7 (64-227)||(26254015-26254178)
chr7 (27-227)||(19692079-19692279)
chr7 (27-227)||(38414793-38414993)
chr7 (27-227)||(24525599-24525802)
chr7 (27-227)||(48983756-48983961)
chr7 (27-146)||(10955469-10955588)
chr7 (31-227)||(47984885-47985083)
chr7 (47-227)||(28749715-28749895)
chr7 (27-225)||(8239670-8239869)
chr7 (27-227)||(25010418-25010611)
chr7 (46-138)||(23859077-23859169)
chr7 (46-145)||(9021799-9021898)
chr7 (65-226)||(33162257-33162418)
chr7 (43-146)||(2611260-2611363)
chr7 (54-146)||(23744808-23744900)
chr7 (43-146)||(7398452-7398555)
chr7 (54-145)||(6765680-6765771)
chr7 (43-138)||(36891579-36891674)
chr7 (43-138)||(12981327-12981422)
chr7 (47-138)||(20153206-20153297)
chr7 (43-229)||(12419411-12419596)
chr7 (159-221)||(40357303-40357365)
chr7 (43-146)||(27237421-27237524)
chr7 (46-144)||(36902924-36903022)
chr7 (79-145)||(21763586-21763652)
chr7 (44-130)||(23020498-23020583)
chr7 (27-97)||(40357413-40357475)
chr7 (79-139)||(18201174-18201234)
chr7 (161-227)||(10955605-10955671)
chr7 (44-122)||(38971255-38971333)
chr7 (89-145)||(9014177-9014233)
[»] chr1 (43 HSPs)
chr1 (27-228)||(44655737-44655937)
chr1 (27-227)||(14146296-14146495)
chr1 (27-228)||(23185423-23185623)
chr1 (27-227)||(5027545-5027746)
chr1 (27-227)||(5316676-5316875)
chr1 (27-227)||(6771787-6771989)
chr1 (27-224)||(50881426-50881621)
chr1 (27-229)||(4971534-4971735)
chr1 (27-228)||(17168952-17169152)
chr1 (27-227)||(27906646-27906834)
chr1 (31-221)||(16140055-16140244)
chr1 (27-227)||(1366797-1366995)
chr1 (27-227)||(3406414-3406614)
chr1 (27-227)||(3440206-3440406)
chr1 (27-227)||(9172940-9173140)
chr1 (27-227)||(9180922-9181122)
chr1 (27-227)||(19955713-19955912)
chr1 (27-231)||(40501703-40501907)
chr1 (27-210)||(41697072-41697254)
chr1 (52-227)||(21740852-21741029)
chr1 (29-146)||(27559635-27559752)
chr1 (27-227)||(51607358-51607557)
chr1 (27-229)||(13913396-13913599)
chr1 (54-227)||(6889634-6889805)
chr1 (54-227)||(6891480-6891651)
chr1 (66-227)||(22865378-22865538)
chr1 (43-145)||(38547035-38547137)
chr1 (27-232)||(44895648-44895848)
chr1 (43-146)||(39134720-39134824)
chr1 (43-146)||(45758506-45758609)
chr1 (45-146)||(5533326-5533428)
chr1 (159-221)||(34247154-34247216)
chr1 (48-146)||(38853539-38853637)
chr1 (43-138)||(43235774-43235871)
chr1 (46-146)||(10925951-10926052)
chr1 (43-212)||(50146308-50146476)
chr1 (43-145)||(26803960-26804059)
chr1 (43-139)||(33170771-33170867)
chr1 (83-146)||(17322621-17322684)
chr1 (43-145)||(6221690-6221791)
chr1 (56-138)||(35392295-35392376)
chr1 (27-97)||(34247044-34247106)
chr1 (168-227)||(52127460-52127519)
[»] scaffold0070 (1 HSPs)
scaffold0070 (27-227)||(1328-1527)
[»] chr4 (57 HSPs)
chr4 (27-215)||(38209520-38209708)
chr4 (27-228)||(47128977-47129177)
chr4 (31-227)||(54780771-54780968)
chr4 (27-227)||(34768492-34768691)
chr4 (27-227)||(32915375-32915575)
chr4 (27-227)||(34027569-34027768)
chr4 (27-227)||(32128574-32128774)
chr4 (30-213)||(43455463-43455645)
chr4 (34-227)||(2790659-2790851)
chr4 (27-228)||(37777139-37777340)
chr4 (27-227)||(10978890-10979092)
chr4 (27-227)||(55255259-55255447)
chr4 (27-227)||(48209230-48209436)
chr4 (27-227)||(5128758-5128959)
chr4 (27-227)||(54083160-54083359)
chr4 (27-228)||(1105522-1105722)
chr4 (27-227)||(16845011-16845210)
chr4 (27-228)||(19498494-19498692)
chr4 (27-227)||(37514649-37514848)
chr4 (27-227)||(10428116-10428322)
chr4 (69-227)||(17679432-17679589)
chr4 (27-229)||(35779243-35779442)
chr4 (27-216)||(35465097-35465284)
chr4 (27-227)||(40089506-40089714)
chr4 (27-227)||(16882313-16882512)
chr4 (27-136)||(13460197-13460306)
chr4 (27-221)||(38352189-38352372)
chr4 (65-224)||(51964736-51964897)
chr4 (74-232)||(9578570-9578735)
chr4 (64-227)||(16922245-16922409)
chr4 (43-228)||(36118376-36118559)
chr4 (43-212)||(52468292-52468459)
chr4 (27-146)||(24969427-24969536)
chr4 (91-229)||(23508425-23508564)
chr4 (79-146)||(51691913-51691980)
chr4 (43-125)||(4167910-4167992)
chr4 (27-96)||(23509846-23509915)
chr4 (43-139)||(27112036-27112132)
chr4 (44-212)||(39329325-39329492)
chr4 (49-139)||(36178684-36178774)
chr4 (66-146)||(39655252-39655332)
chr4 (43-146)||(10041998-10042101)
chr4 (43-146)||(24396940-24397043)
chr4 (159-228)||(24969718-24969787)
chr4 (43-139)||(2135326-2135422)
chr4 (43-137)||(37744916-37745011)
chr4 (43-132)||(40217238-40217327)
chr4 (51-146)||(36362869-36362964)
chr4 (168-228)||(980336-980396)
chr4 (172-228)||(13460305-13460361)
chr4 (44-136)||(15735102-15735189)
chr4 (43-139)||(45656181-45656277)
chr4 (156-211)||(2975358-2975413)
chr4 (102-145)||(24614018-24614061)
chr4 (81-131)||(29425187-29425237)
chr4 (104-146)||(30507120-30507162)
chr4 (81-131)||(11906904-11906954)
[»] scaffold0039 (1 HSPs)
scaffold0039 (27-227)||(106523-106723)
[»] scaffold1590 (1 HSPs)
scaffold1590 (43-146)||(257-360)
[»] scaffold0012 (1 HSPs)
scaffold0012 (43-138)||(206496-206591)
[»] scaffold0001 (2 HSPs)
scaffold0001 (88-227)||(183106-183244)
scaffold0001 (27-92)||(181904-181969)
[»] scaffold0018 (1 HSPs)
scaffold0018 (43-139)||(173516-173612)
[»] scaffold0097 (1 HSPs)
scaffold0097 (43-139)||(38926-39022)
[»] scaffold0182 (1 HSPs)
scaffold0182 (45-145)||(23993-24093)
[»] scaffold1320 (1 HSPs)
scaffold1320 (43-138)||(1355-1450)
[»] scaffold0007 (1 HSPs)
scaffold0007 (44-146)||(230858-230960)
[»] scaffold0022 (2 HSPs)
scaffold0022 (43-146)||(40086-40191)
scaffold0022 (43-146)||(138146-138251)
[»] scaffold0227 (2 HSPs)
scaffold0227 (43-110)||(16028-16095)
scaffold0227 (100-145)||(16123-16168)
[»] scaffold0229 (1 HSPs)
scaffold0229 (38-135)||(23879-23976)
[»] scaffold0003 (1 HSPs)
scaffold0003 (66-119)||(351360-351413)


Alignment Details
Target: chr6 (Bit Score: 173; Significance: 7e-93; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 13727517 - 13727317
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13727517 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 13727418  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13727417 aaatagaacattgctcttttaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 13727318  T
Q  227 g 227  Q
    |    
T  13727317 g 13727317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 21280533 - 21280734
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21280533 tttggtgttaggtgggagttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 21280632  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21280633 aaatagaacattgctcttttaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 21280732  T
Q  227 ga 228  Q
    ||    
T  21280733 ga 21280734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 21479482 - 21479683
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21479482 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 21479581  T
Q  127 aaatagaacattgctctttt-nnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccc 225  Q
    ||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  21479582 aaatagaacattgctcttttaaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagccgagcctccaaattctcagagacggccc 21479681  T
Q  226 tg 227  Q
    ||    
T  21479682 tg 21479683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 27788806 - 27788603
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27788806 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatat 27788707  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    |||||||| |||||||||||         || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  27788706 aaatagaaaattgctcttttaaaaaaa--tacgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattcttagggacggccct 27788609  T
Q  227 gataat 232  Q
    ||||||    
T  27788608 gataat 27788603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 27 - 226
Target Start/End: Original strand, 33774105 - 33774305
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33774105 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacatttgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 33774204  T
Q  127 aaatagaacattgctctttt-nnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccc 225  Q
    |||||||||||| |||||||         ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||| |||||    
T  33774205 aaatagaacattactcttttaaaaaaaaattatgttttgattttattactggcctcttttcattttcagagccgagcctccgaattctcaaggatggccc 33774304  T
Q  226 t 226  Q
    |    
T  33774305 t 33774305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 32 - 229
Target Start/End: Complemental strand, 20711833 - 20711636
Alignment:
Q  32 tgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaata 131  Q
    |||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20711833 tgttagatgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaata 20711734  T
Q  132 gaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctgat 229  Q
    |||||||||||||||         || ||||||||||||| |||| |||||||||||| ||||| ||||||||||||||||||||||||| |||||||    
T  20711733 gaacattgctcttttaaaaaaaaatacgttttgattttatgactgacctcttttcattcccagaaccgagcctccgaattctcagggacgtccctgat 20711636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 30832642 - 30832443
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| |    
T  30832642 tttggtgttaggtgggggttcctcatgcatacggtagtcattttcatctctgggtgtaccacatatatacggcatcttgtatttattttttaaaaaatgt 30832543  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||| || |||||         || ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  30832542 aaatagaacatcgcgctttttaaaaaaa-tacgttttgattttatcactggcctcttttcattcccagagccgagccttcgaattctcagggacggccct 30832444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 17353942 - 17354142
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||  | ||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  17353942 tttggtgttaggtgggggttcatcatgtatacgatagtcattttcacatttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatat 17354041  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||| ||||         || |||||||||||||||||| |||||||||||| | |||| |||||||||||||||| ||||||||||||    
T  17354042 aaatagaacattgctttttttaaaaaaaatacgttttgattttatcactgacctcttttcattccaagagtcgagcctccgaattcttagggacggccct 17354141  T
Q  227 g 227  Q
    |    
T  17354142 g 17354142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 27 - 228
Target Start/End: Complemental strand, 19737810 - 19737611
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  19737810 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctaggtgtaccgcatatatacggcaccttgtatttatctttaaaaaaatat 19737711  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||||||||          |  |||||||||||||||||||||||||||| | | |||||||| ||| | |||||||||||||| ||||    
T  19737710 aaatagaacattgctcttttaaaaaaaa-aacattttgattttatcactggcctcttttca-tcctagagccgaaccttcaaattctcagggacgaccct 19737613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 24711117 - 24710914
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  24711117 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgagtgtaccacatatatacggcaccttgtatttatcttttaaaaaatat 24711018  T
Q  127 aaatagaacattgctcttt---tnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggc 223  Q
    |||||||||||  ||||||              | |||||||||||||||||  |||||||||||| || |||| |||||||||||||||||||||||||    
T  24711017 aaatagaacatcactctttaaaaaaaaaaaaaaacgttttgattttatcactaacctcttttcattccctgagctgagcctccgaattctcagggacggc 24710918  T
Q  224 cctg 227  Q
    ||||    
T  24710917 cctg 24710914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 27 - 213
Target Start/End: Original strand, 28075771 - 28075960
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  28075771 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtatcgcatatatacggcaccttatatttatcttttaaaaaatat 28075870  T
Q  127 aaatagaacattgctcttt---tnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattct 213  Q
    ||||||||||||||| |||             || ||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||    
T  28075871 aaatagaacattgctttttaaaataaaaaaaatacgttttgattttttcactggcctcttttcattcccagagccgagcctccaaattct 28075960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 65 - 227
Target Start/End: Complemental strand, 27314259 - 27314097
Alignment:
Q  65 cattttcatctctgggtgtaccgcatatatacggcaccttgtatttatc-ttttaaaaaatataaatagaacattgctcttttnnnnnnnnttatgtttt 163  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||         || |||||    
T  27314259 cattttcacctctgagtgtaccgcatatatacggcaccttgtatttatctttttaaaaaatataaatagaacattgctcttttaaaaaaaa-tacgtttt 27314161  T
Q  164 gattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 227  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||    
T  27314160 gattttatcactggcctcttttcattcccagagtcgagcctccgaattttcagggacggccctg 27314097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 47 - 225
Target Start/End: Complemental strand, 1155947 - 1155767
Alignment:
Q  47 cctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttt- 145  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||     
T  1155947 cctcatgtatacggtagtcattttcacctctggatgtaccgcatatatatgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttta 1155848  T
Q  146 -tnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccc 225  Q
              |||  ||||||||||||||||| |||||||||||| | ||| |||||||||| |||| | |||||||||||    
T  1155847 aaaaaaaaaattactttttgattttatcactgacctcttttcattcctagaaccgagcctccaaatttttagggacggccc 1155767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 27 - 219
Target Start/End: Complemental strand, 235343 - 235151
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatata--cggcaccttgtatttatcttttaaaaaat 124  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||| | |||||||  ||||||||| |||||||||||||||||||    
T  235343 tttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcatctttgggtgtacggtatatatacccggcaccttatatttatcttttaaaaaat 235245  T
Q  125 ataaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcaggga 219  Q
    ||||||||| ||||||| ||||         || ||||||||||||||||||| |||||||||||  || |||||| |||||||||||| |||||    
T  235244 ataaatagatcattgct-ttttaaaaaaaaatacgttttgattttatcactggtctcttttcattctcatagccgaacctccgaattcttaggga 235151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 27 - 223
Target Start/End: Original strand, 34397845 - 34398039
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||| |||| |||||||||||| |||| |||||||||| | || | ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34397845 tttggtgttaagtggaggttcctcatgtttacgatagtcatttttacctttaggtgtaccgcatatatacgtcaccttgtatttatcttttaaaaaatat 34397944  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggc 223  Q
    ||||||||||||||||||||         || ||||||||||||||||||| || |||| | | |||||  |||| ||||||||||| |||||||||    
T  34397945 aaatagaacattgctcttttaaaaaaaa-tacgttttgattttatcactggtcttttttta-tcccagatgcgagtctccgaattcttagggacggc 34398039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 43 - 134
Target Start/End: Complemental strand, 21183777 - 21183686
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaa 134  Q
    |||||||||||||||||||||| ||||||| || |||||||||| ||||||||||  || |||||||||||||||||||||| |||||||||    
T  21183777 ggttcctcatgtatacggtagtgattttcaactttgggtgtaccacatatatacgctactttgtatttatcttttaaaaaatttaaatagaa 21183686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 2477686 - 2477590
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattg 139  Q
    |||||||||||||||||||||| |||||||  | | |||||| |||||||||| | |||||||||||||||||||||||||| ||||| ||||||||    
T  2477686 ggttcctcatgtatacggtagtgattttcacattttggtgtatcgcatatatatgtcaccttgtatttatcttttaaaaaatttaaattgaacattg 2477590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 43 - 139
Target Start/End: Original strand, 6159442 - 6159538
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattg 139  Q
    ||||||| || ||||||||||| |||| || || ||  ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  6159442 ggttccttatatatacggtagtgatttccacctttgaatgtaccgcatatatacgacacattgtatttatcttttaaaaaatataaatagaacattg 6159538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 138
Target Start/End: Original strand, 20611794 - 20611889
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatt 138  Q
    |||||||||||||||||||||| ||||||| || ||| |||  || ||||||||| ||||||||||||||| |||||||||| ||| |||||||||    
T  20611794 ggttcctcatgtatacggtagtgattttcacctttggatgtgtcgtatatatacgacaccttgtatttatcgtttaaaaaatttaagtagaacatt 20611889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 4036953 - 4037031
Alignment:
Q  44 gttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaa 122  Q
    ||||||||| ||||||||||| || || | || ||||||||||  |||||||||||||||||||||||||| |||||||    
T  4036953 gttcctcatatatacggtagtgatctttacctttgggtgtaccatatatatacggcaccttgtatttatctcttaaaaa 4037031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 30121783 - 30121868
Alignment:
Q  60 gtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttt 145  Q
    ||||| ||||||| || ||| |||| |||||||||| | |||||||||||||| ||||||||||| |||||| ||||||| |||||    
T  30121783 gtagtgattttcacctttggatgtatcgcatatatatgacaccttgtatttattttttaaaaaatttaaataaaacattgttcttt 30121868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 19987277 - 19987330
Alignment:
Q  168 ttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacg 221  Q
    ||||||||| ||||||||||||   |||||||| |||||||||||| |||||||    
T  19987277 ttatcactgacctcttttcattctgagagccgatcctccgaattcttagggacg 19987330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 20611924 - 20611977
Alignment:
Q  176 ggcctcttttcatttccagagccgagcctccgaattctcagggacggccctgat 229  Q
    |||||||||||| || |||||||||||||||||||||  ||| ||| |||||||    
T  20611924 ggcctcttttcacttacagagccgagcctccgaattcgtaggaacgaccctgat 20611977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 19987149 - 19987209
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccg 87  Q
    ||||||||||||||||| ||||| ||||||| ||||  ||||||||  | |||||||||||    
T  19987149 tttggtgttaggtggggattccttatgtatatggtaaccattttcacatttgggtgtaccg 19987209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 27994775 - 27994819
Alignment:
Q  45 ttcctcatgtatacggtagtcattttcatctctgggtgtaccgca 89  Q
    |||||||||||||||||||| ||||||| || || ||||||||||    
T  27994775 ttcctcatgtatacggtagtgattttcacctttgagtgtaccgca 27994819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 4e-91; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 4505878 - 4506079
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4505878 tttggtgttaggtgggggttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 4505977  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4505978 aaatagaacattgctcttttaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 4506077  T
Q  227 ga 228  Q
    ||    
T  4506078 ga 4506079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 27 - 224
Target Start/End: Original strand, 6964991 - 6965186
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6964991 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcactttgtatttatcttttaaaaaatat 6965090  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggcc 224  Q
    ||||||||||||||||||||        |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6965091 aaatagaacattgctcttttaaaaaaaatta--ttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggcc 6965186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 3155201 - 3155401
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3155201 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctaggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 3155300  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||||||||        ||||||||| |||||||||||| |||||||||||||  | ||||||||||||||||||||||||||||||||    
T  3155301 aaatagaacattgctcttttaaaaaaaattatgttttaattttatcactgacctcttttcatttttaaagccgagcctccgaattctcagggacggccct 3155400  T
Q  227 g 227  Q
    |    
T  3155401 g 3155401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 12337566 - 12337365
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| | ||||||||||||||||||||||||||||    
T  12337566 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccacatatatatgacaccttgtatttatcttttaaaaaatat 12337467  T
Q  127 aaatagaacattgctctttt-nnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccc 225  Q
    ||||||||||||||||||||         |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12337466 aaatagaacattgctcttttaaaaaaaaattatattttgattttatcactggcctcttttcatttccagagccgagccttcgaattctcagggacggccc 12337367  T
Q  226 tg 227  Q
    ||    
T  12337366 tg 12337365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 8907197 - 8906996
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8907197 tttggtgttaggtgggggtttctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggcgccttgtatttatcttttaaaaaatat 8907098  T
Q  127 aaatagaacattgctctttt-nnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccc 225  Q
    |||||||||||| |||||||         |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  8907097 aaatagaacattactcttttaaaaaaaaattatgttttgattttatcactggcctcttttcattttcagagccgagcctccgaattctcaggaacggccc 8906998  T
Q  226 tg 227  Q
    ||    
T  8906997 tg 8906996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 29939980 - 29939779
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  29939980 tttggtgttaggtggtggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttgtatttatcttgtaaaaaatat 29939881  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||||||||         || |||||||||||||||||| |||||||| ||| |||||||||||||| ||||||||||||||||| |||    
T  29939880 aaatagaacattgctcttttaaaaaaaa-tacgttttgattttatcactgacctctttttattcccagagccgagccttcgaattctcagggacggtcct 29939782  T
Q  227 gat 229  Q
    |||    
T  29939781 gat 29939779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 27506858 - 27506657
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||| ||||||||||||||| ||||||||||| | || |||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  27506858 tttggtgttaggtgggagttcctcatgtatacagtagtcatttttacctttgggtgtaccacatatatacggcaccttatatttatcttttaaaaaatat 27506759  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||| ||||||| ||||         || |||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||    
T  27506758 aaatagatcattgct-tttttttaaaaaatacgttttgattttatcactggcctcttttcattctcagagccgagcctccgaattcttagggacggccct 27506660  T
Q  227 gat 229  Q
    |||    
T  27506659 gat 27506657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 31 - 227
Target Start/End: Original strand, 26716116 - 26716313
Alignment:
Q  31 gtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatctttt-aaaaaatataaa 129  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||| |||||||||||| ||||||||||||    
T  26716116 gtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatatggcaccttatatttatcttttaaaaaaatataaa 26716215  T
Q  130 tagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 227  Q
    |||||||||||||||||         || |||||||||||||||||| |||||||||||| ||| |||||||||  |||||||| |||||||||||||    
T  26716216 tagaacattgctcttttaaaaaaaaatacgttttgattttatcactgacctcttttcattcccaaagccgagccaacgaattcttagggacggccctg 26716313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 3952990 - 3953188
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3952990 tttggtgttaggtgggggttcctcatgcatacggtaatcattttcacctctgggtgtaccgcatgtatacggcaccttgtatttatcttttaaaaaatat 3953089  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||| | |||||          ||  ||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||| ||||    
T  3953090 aaatagaacatcggtcttt--aaaaaaaatacattttgattttatcactgacctcttttcatttccaaagccgagcctccaaattctcagggacgaccct 3953187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 27 - 224
Target Start/End: Complemental strand, 10762683 - 10762488
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||| ||||||| |||||||||||||||||||||    
T  10762683 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccacatatataccgcaccttatatttatcttttaaaaaatat 10762584  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggcc 224  Q
    |||||||||||||||||||           | ||||| ||||||||||||||||||||||||| ||||||| |||||||| |||||| ||||||||||    
T  10762583 aaatagaacattgctctttaaaaaaaaa--acgttttaattttatcactggcctcttttcattcccagagctgagcctccaaattcttagggacggcc 10762488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 27 - 229
Target Start/End: Original strand, 24410420 - 24410625
Alignment:
Q  27 tttggtgttaggtgggg-gttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaata 125  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24410420 tttggtgttaggtggggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaata 24410519  T
Q  126 taaatagaacattgctcttt--tnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggc 223  Q
    |||||||||||||| | |||            || ||||||||||||||||||||||||||||||| ||| | ||||||||||||||||| |||||||||    
T  24410520 taaatagaacattgttttttaaaaaaaaaaaatacgttttgattttatcactggcctcttttcattcccaaaaccgagcctccgaattcttagggacggc 24410619  T
Q  224 cctgat 229  Q
    ||||||    
T  24410620 cctgat 24410625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 7162768 - 7162968
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  7162768 tttggtgttaggtaggggttcctcatatatacggtagtcattttcacctctgagtataccgcatatatacggcaccttgtatttatcttttaaaaaatat 7162867  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||| ||||||||          |  |||| ||||||||||||||||||||||||| || |||| |||||| |||| ||||||||||||||||    
T  7162868 aaatagaacatcgctcttttaaaaaaaa-gacattttaattttatcactggcctcttttcattccccgagctgagccttcgaaatctcagggacggccct 7162966  T
Q  227 ga 228  Q
    ||    
T  7162967 ga 7162968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 31 - 227
Target Start/End: Original strand, 9046017 - 9046213
Alignment:
Q  31 gtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatctttt-aaaaaatataaa 129  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  9046017 gtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaaatataaa 9046116  T
Q  130 tagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 227  Q
    |||||||||| ||||||         || ||||||||||||||||||||||||||| ||| ||||||| |||||  ||||||||  ||||||||||||    
T  9046117 tagaacattgttcttttaaaaacaa-tacgttttgattttatcactggcctcttttaattcccagagctgagccaacgaattctttgggacggccctg 9046213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 69 - 223
Target Start/End: Original strand, 40636164 - 40636317
Alignment:
Q  69 ttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnttatgttttgattt 168  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||    
T  40636164 ttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaa-tatgttttgattt 40636262  T
Q  169 tatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggc 223  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  40636263 tatcactggcctcttttcattcccagagctgagcctccgaattctcagggacggc 40636317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 59 - 224
Target Start/End: Original strand, 34693991 - 34694155
Alignment:
Q  59 ggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnttat 158  Q
    |||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||     
T  34693991 ggtagtcattttgacctctgggtgtaccacatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaa-tac 34694089  T
Q  159 gttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggcc 224  Q
    |||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||    
T  34694090 gttttgattttatcacgggcctcttttcatttccagatccgaacctccgaattctcagggacggcc 34694155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 59 - 224
Target Start/End: Original strand, 34716403 - 34716567
Alignment:
Q  59 ggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnttat 158  Q
    |||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||     
T  34716403 ggtagtcattttgacctctgggtgtaccacatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaa-tac 34716501  T
Q  159 gttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggcc 224  Q
    |||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||    
T  34716502 gttttgattttatcacgggcctcttttcatttccagatccgaacctccgaattctcagggacggcc 34716567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 69 - 221
Target Start/End: Complemental strand, 5952791 - 5952642
Alignment:
Q  69 ttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnttatgttttgattt 168  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||         || ||||||||||    
T  5952791 ttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaa--ataaatataacattgctcttttaaaaaaaa-tacgttttgattt 5952695  T
Q  169 tatcactggcctcttttcatttccagagccgagcctccgaattctcagggacg 221  Q
    ||||| ||||||||||||||| | |||||||| ||||||||||||||||||||    
T  5952694 tatcattggcctcttttcattccgagagccgaacctccgaattctcagggacg 5952642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 1396730 - 1396617
Alignment:
Q  114 ttttaaaaaatataaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattct 213  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1396730 ttttaaaaaatataaatagaacattgctcttttaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagtcgagcctccgaattct 1396631  T
Q  214 cagggacggccctg 227  Q
    || ||| |||||||    
T  1396630 caaggaaggccctg 1396617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 16097008 - 16097111
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    ||||||||||||||| |||||| ||||||| || |||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  16097008 ggttcctcatgtataaggtagtaattttcacctttgggtgtacatcatatatacggcaccttgtatttatcttttaaaaaatttaaatagaacattgttc 16097107  T
Q  143 tttt 146  Q
    ||||    
T  16097108 tttt 16097111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 24035645 - 24035544
Alignment:
Q  45 ttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 144  Q
    |||||||||||| ||||||| ||||||| || | |||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  24035645 ttcctcatgtatgcggtagtgattttcacctttaggtgtatcgcatttatacggcaccttgtatttatcttttaaaaaatttaaatagaacattgttctt 24035546  T
Q  145 tt 146  Q
    ||    
T  24035545 tt 24035544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 38400798 - 38400899
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    |||||||||||||||||||||| ||||||| || ||  |||| |||||||||| | |||||||||||||||||||||||||| |||||||||||||| ||    
T  38400798 ggttcctcatgtatacggtagtgattttcacctttgaatgtatcgcatatatatgacaccttgtatttatcttttaaaaaatttaaatagaacattgttc 38400897  T
Q  143 tt 144  Q
    ||    
T  38400898 tt 38400899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 13800647 - 13800543
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctct-gggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgct 141  Q
    |||||||| ||||||  ||||| ||||||| || | ||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |    
T  13800647 ggttcctcgtgtatatagtagtgattttcaccttttgggtgtatcgcatatatacggcaccttatatttatcttttaaaaaatttaaatagaacattgtt 13800548  T
Q  142 ctttt 146  Q
    |||||    
T  13800547 ctttt 13800543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 12134142 - 12134039
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    ||||||| |||||||||||||| |||||||  | |||||||| ||||||||||||| |||||||||||||||||||||   | |||||||||||||| ||    
T  12134142 ggttcctaatgtatacggtagtgattttcacttttgggtgtatcgcatatatacggtaccttgtatttatcttttaaattttttaaatagaacattgttc 12134043  T
Q  143 tttt 146  Q
    ||||    
T  12134042 tttt 12134039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 21665802 - 21665699
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    |||||||||||||||||||||| |||||||  | | | |||| | |||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||    
T  21665802 ggttcctcatgtatacggtagtgattttcacattttgatgtatcacatatatacgacaccgtgtatttatcttttaaaaaatttaaatagaacattgttc 21665703  T
Q  143 tttt 146  Q
    ||||    
T  21665702 tttt 21665699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 28425812 - 28425709
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    |||||||||| |||| |||||| |||||||  | ||||||||| ||||||||||| |||||||||||||||||||||||  | |||||||||||||| ||    
T  28425812 ggttcctcatatatatggtagtgattttcacatttgggtgtactgcatatatacgacaccttgtatttatcttttaaaatttttaaatagaacattgttc 28425713  T
Q  143 tttt 146  Q
    ||||    
T  28425712 tttt 28425709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 43 - 145
Target Start/End: Complemental strand, 16227470 - 16227368
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    ||||||| |||||||  ||||| |||||||||| | |||||| | |||||||||| |||||||||||||||||||||||||| ||||||||| |||| ||    
T  16227470 ggttccttatgtatatagtagtgattttcatctatcggtgtatcacatatatacgacaccttgtatttatcttttaaaaaatttaaatagaaaattgttc 16227371  T
Q  143 ttt 145  Q
    |||    
T  16227370 ttt 16227368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 99 - 228
Target Start/End: Original strand, 8327674 - 8327802
Alignment:
Q  99 caccttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagcc 198  Q
    |||||| |||||||||||||||||||||||||||| ||||||| ||||        | | ||||||||||||||||||  ||||||||||||||||| |     
T  8327674 caccttatatttatcttttaaaaaatataaatagatcattgcttttttaaaaaaaat-acgttttgattttatcactgatctcttttcatttccagaact 8327772  T
Q  199 gagcctccgaattctcagggacggccctga 228  Q
    ||||||||||||| | |||||||| |||||    
T  8327773 gagcctccgaatttttagggacggtcctga 8327802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 43 - 145
Target Start/End: Complemental strand, 11912859 - 11912757
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    ||||||| |||||||||||||| |||||||||| ||| ||||  ||||||||||||||| |||||||||| ||||   |||| |||||||||||||| ||    
T  11912859 ggttccttatgtatacggtagtgattttcatctttggatgtattgcatatatacggcactttgtatttatttttttttaaatttaaatagaacattgttc 11912760  T
Q  143 ttt 145  Q
    |||    
T  11912759 ttt 11912757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 7742236 - 7742132
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaa-aaaatataaatagaacattgct 141  Q
    ||||||||||| ||||| ||||  |||||| || ||| |||| |||||||||| | ||| ||||||||||||||||| |||||||||||||||||||| |    
T  7742236 ggttcctcatgcatacgatagtatttttcacctttggatgtaacgcatatatatgacacattgtatttatcttttaaaaaaatataaatagaacattgtt 7742137  T
Q  142 ctttt 146  Q
    |||||    
T  7742136 ctttt 7742132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 37182670 - 37182739
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttat 112  Q
    |||||||||||||||||||||| |||||||  | ||||||||  ||||||||||| ||||||||||||||    
T  37182670 ggttcctcatgtatacggtagtgattttcacttttgggtgtattgcatatatacgacaccttgtatttat 37182739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 22727598 - 22727530
Alignment:
Q  49 tcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatctttt 117  Q
    ||||||||| |||||| |||||||  | ||||||||||||||||||||| ||| | |||||||||||||    
T  22727598 tcatgtatatggtagtgattttcacttttgggtgtaccgcatatatacgtcacatagtatttatctttt 22727530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 212
Target Start/End: Complemental strand, 22727497 - 22727391
Alignment:
Q  105 gtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcct 204  Q
    |||||||||||||||||||| |||||||||||||| ||||||         || ||||| ||||||| ||| ||||||||||| || ||| | |||||||    
T  22727497 gtatttatcttttaaaaaatttaaatagaacattgttcttttaaaaaaaa-tacgtttttattttattacttgcctcttttcacttacagcgtcgagcct 22727399  T
Q  205 ccgaattc 212  Q
    ||||||||    
T  22727398 ccgaattc 22727391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 42029168 - 42029247
Alignment:
Q  66 attttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttt 145  Q
    ||||||| || | |||||||  ||| |||| | |||||| ||||||||||||||||||| |||||||||||||| |||||    
T  42029168 attttcacctttaggtgtacaacatgtatatgacaccttatatttatcttttaaaaaatttaaatagaacattgttcttt 42029247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 11952643 - 11952588
Alignment:
Q  89 atatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttt 145  Q
    ||||||||| ||| ||||||| |||||||||||||| |||||||||||||| |||||    
T  11952643 atatatacgacactttgtatt-atcttttaaaaaatttaaatagaacattgttcttt 11952588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 10252472 - 10252511
Alignment:
Q  99 caccttgtatttatcttttaaaaaatataaatagaacatt 138  Q
    |||||||||||||||||||||||||| ||||| |||||||    
T  10252472 caccttgtatttatcttttaaaaaatttaaattgaacatt 10252511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 37182759 - 37182832
Alignment:
Q  159 gttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctgataat 232  Q
    ||||| ||||||| || || ||||||||| || |||||||||||||||| ||||| ||| ||| || |||||||    
T  37182759 gtttttattttattacgggtctcttttcacttacagagccgagcctccggattcttaggaacgaccttgataat 37182832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 11952708 - 11952644
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgta 107  Q
    |||||||||||||| | ||||| |||||||||| || ||||| | |||||||||| ||| |||||    
T  11952708 ggttcctcatgtatgcagtagtgattttcatctatgagtgtatcacatatatacgacactttgta 11952644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 166; Significance: 1e-88; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 27 - 228
Target Start/End: Complemental strand, 54619321 - 54619120
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54619321 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 54619222  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||||||||        ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  54619221 aaatagaacattgctcttttaaaaaaaattatgttttgattttatcattggcttcttttcatttccagagccgagcctccgaattctcagggacggccct 54619122  T
Q  227 ga 228  Q
    ||    
T  54619121 ga 54619120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 27 - 228
Target Start/End: Complemental strand, 38681211 - 38681010
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  38681211 tttggtgttaggtggggtttcctcatgtatacggtagtcattttcacctctggatgtaccgcatacatacggcaccttgtatttatcttttaaaaaatat 38681112  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38681111 aaatagaacattgctcttttaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 38681012  T
Q  227 ga 228  Q
    ||    
T  38681011 ga 38681010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 36716143 - 36715942
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||||||| ||||| ||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36716143 tttggtgttaggtgggggtccctcacgtatacggtggtcgttttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 36716044  T
Q  127 aaatagaacattgctctttt-nnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccc 225  Q
    ||||||||||||||||||||         ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36716043 aaatagaacattgctcttttaaataaaaattatgtttttattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccc 36715944  T
Q  226 tg 227  Q
    ||    
T  36715943 tg 36715942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 21582759 - 21582960
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21582759 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 21582858  T
Q  127 aaatagaacattgctctttt-nnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccc 225  Q
    ||||| ||||||| ||||||          || ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  21582859 aaataaaacattgttcttttaaaaaaaaaatacgttttgattttatcactggcctcttttcattcccaaagccgagcctccgaattctcagggacggccc 21582958  T
Q  226 tg 227  Q
    ||    
T  21582959 tg 21582960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 47467672 - 47467872
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47467672 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtatcgcatatatacggcaccttgtatttatcttttaaaaaatat 47467771  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||| |||||||           | |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47467772 aaatagaacatcgctctttaaaaaaaaaacacgttttgattttatcactgacctcttttcattcccagagccgagcctccgaattctcagggacggccct 47467871  T
Q  227 g 227  Q
    |    
T  47467872 g 47467872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 27078687 - 27078486
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  27078687 tttggtgttaggtaggggtttctcatgtatacggtagtcattttcacctctgggtataccgcatatatacggcactttgtatttatcttttaaaaaatat 27078588  T
Q  127 aaatagaacattgctctttt-nnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccc 225  Q
    ||||||||||||||| ||||         |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27078587 aaatagaacattgcttttttaaaaaaaaattatgttttgattttatcactgacctcttttcatttccagagccaagcctccgaattctcagggacggccc 27078488  T
Q  226 tg 227  Q
    ||    
T  27078487 tg 27078486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 27084484 - 27084283
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  27084484 tttggtgttaggtaggggtttctcatgtatacggtagtcattttcacctctgggtataccgcatatatacggcactttgtatttatcttttaaaaaatat 27084385  T
Q  127 aaatagaacattgctctttt-nnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccc 225  Q
    ||||||||||||||| ||||         |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27084384 aaatagaacattgcttttttaaaaaaaaattatgttttgattttatcactgacctcttttcatttccagagccaagcctccgaattctcagggacggccc 27084285  T
Q  226 tg 227  Q
    ||    
T  27084284 tg 27084283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 27 - 226
Target Start/End: Complemental strand, 3954014 - 3953816
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3954014 tttggtgttaggtgggggttcctcatgtatacggttttcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 3953915  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||| ||||||         ||  |||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  3953914 aaatagaacattgttcttttaaaaaaaa-tacattttaattttatcactggcctcttttcatttccagagcggaacctccgaattctcagggacggccct 3953816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 27 - 228
Target Start/End: Complemental strand, 8073455 - 8073256
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8073455 tttggtgttatgtgggg-ttcctcatgtatacggtagtcattttcacttttgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatat 8073357  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    |||||||||||| |||||||         || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8073356 aaatagaacattactcttttaaaaaaaa-tacgttttgattttatcactgacctcttttcatttccagagccgagcctccgaattctcagggacggccct 8073258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 27 - 230
Target Start/End: Complemental strand, 53149432 - 53149229
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  53149432 tttggtgttaggtgggggttcctcatgtatacggtagtcatttttatctctgagtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 53149333  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||| ||||||||          | ||||||||||||||||||| ||||||||||| || || | |||||||||||||||||| ||||||| |    
T  53149332 aaatagaacatcgctcttttaaaaaaaaaaacgttttgattttatcactggtctcttttcattccccgaactgagcctccgaattctcagagacggccgt 53149233  T
Q  227 gata 230  Q
    ||||    
T  53149232 gata 53149229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 42098789 - 42098990
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||| || |||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  42098789 tttggtgttaagtaggggttcctcatgtatacggtagtcattttcacctctgagtataccgcatatatacggcaccttgtatttatcttttaaaaaatat 42098888  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||| ||||||||          |  ||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||    
T  42098889 aaatagaacatcgctcttttaaaaaaaaagacattttgattttatcactggcctcttttcatttcccgagctgagccttcgaattctcagggacggccct 42098988  T
Q  227 ga 228  Q
    ||    
T  42098989 ga 42098990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 34290754 - 34290554
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34290754 tttggtgttaggtgggggttcctcatatatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatat 34290655  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||| | ||||         || |||||||||||||||||| | |||||||||| ||||||||||||||||||||||| | ||||||||||    
T  34290654 aaatagaacattgtttttttaaaaaaaaatacgttttgattttatcactgacttcttttcattcccagagccgagcctccgaattcttaaggacggccct 34290555  T
Q  227 g 227  Q
    |    
T  34290554 g 34290554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 31 - 228
Target Start/End: Original strand, 37168359 - 37168556
Alignment:
Q  31 gtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaat 130  Q
    |||||||||||| ||||||||||||||||||||||||||||| || ||||| |||| ||||||||||||||||| |||||||||||||||||||||||||    
T  37168359 gtgttaggtgggagttcctcatgtatacggtagtcattttcacctttgggtataccacatatatacggcaccttatatttatcttttaaaaaatataaat 37168458  T
Q  131 agaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctga 228  Q
    ||||||||| | ||||         || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  37168459 agaacattgtttttttaaaaaaaaatacgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattcttagggacggcgctga 37168556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 44708465 - 44708665
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  44708465 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccggatatatacggcaccttatatttatcttttaaaaaatat 44708564  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    |||||||||||| || ||||         || ||||||||||||||||||||||||||||||| ||||||  ||||||||||||||| ||||||||| ||    
T  44708565 aaatagaacatttct-ttttttaaaaaaatacgttttgattttatcactggcctcttttcattcccagagttgagcctccgaattcttagggacggctct 44708663  T
Q  227 ga 228  Q
    ||    
T  44708664 ga 44708665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 43207355 - 43207157
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||  |||||||||||||||||||||||| |||||||||||||||||||||    
T  43207355 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttga-tgtaccgcatatatacggcaccttatatttatcttttaaaaaatat 43207257  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||||||||         || ||||| | ||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||    
T  43207256 aaatagaacattgctcttttaaaaaaaa-tacgtttttaatttatcactggcctcttttcattcccagagccgagcctccaaattcttagggacggccct 43207158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 53507002 - 53506802
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  53507002 tttggtgttaggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggtaccttatatttatcttttaaaaaatat 53506903  T
Q  127 aaatagaacattgctctttt-nnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccc 225  Q
    ||||||||||||| | ||||          ||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||| | |||||||||    
T  53506902 aaatagaacattgtttttttaaaaaaaaaatatgttttgattttatcactggcctctcttcattcccagagccgagccttcgaattctta-ggacggccc 53506804  T
Q  226 tg 227  Q
    ||    
T  53506803 tg 53506802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 50939351 - 50939152
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||| ||||||||||||||||||||||||||||||| | || ||||||||||  |||||||||||||||| |||||||||||||||||||||    
T  50939351 tttggtgttaggcgggggttcctcatgtatacggtagtcatttttacctttgggtgtaccatatatatacggcaccttatatttatcttttaaaaaatat 50939252  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||| ||||||| ||||         || |||||||||||||||||||||||||||||||  |||||||||||| ||||||||| ||||||||||||    
T  50939251 aaatagatcattgct-ttttttaaaaaaatacgttttgattttatcactggcctcttttcattctcagagccgagcccccgaattcttagggacggccct 50939153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 47 - 224
Target Start/End: Original strand, 36605973 - 36606149
Alignment:
Q  47 cctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatc-ttttaaaaaatataaatagaacattgctcttt 145  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  36605973 cctcatgtatacggtagt-attttcatctctgggtgtaccgcatatatacggcaccttgtatttatctttttaaaaaatataaatagaacattgctctat 36606071  T
Q  146 tnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggcc 224  Q
    |         || |||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||    
T  36606072 taaaaaaaa-tacgttttgattttatcactgacctcttttcatttccagagccgaacctccgaattttcagggacggcc 36606149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 54407275 - 54407073
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||| || |||||||||||||||||||||| || ||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  54407275 tttggtgttaggtgggggttact-atgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaaatat 54407177  T
Q  127 aaatagaacattg---ctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggc 223  Q
    |||||||||||||    | ||||          | |||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  54407176 aaatagaacattgttttttttttaaaaaaaaaaacgttttgattttatcaccggcctcttttcattcccagagccgagcctccgaattcttagggacggc 54407077  T
Q  224 cctg 227  Q
    ||||    
T  54407076 cctg 54407073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 18372467 - 18372671
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgc----atatatacggcaccttgtatttatcttttaaaaa 122  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||| ||||| |||||||||    ||||||||| ||||||||||||||||||||||||    
T  18372467 tttggtgttagatggggattcctcatgtatacggtagtcattttcacctctgtgtgtaccgcgcgcatatatacgacaccttgtatttatcttttaaaaa 18372566  T
Q  123 atataaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacgg 222  Q
    ||||||||||||||||||||||||         || |||||||||||||||||| |||||||||||| |||| | ||||||||||||||||||  |||||    
T  18372567 atataaatagaacattgctcttttaaaaaaaa-tacgttttgattttatcactgacctcttttcattcccagtgtcgagcctccgaattctcaaagacgg 18372665  T
Q  223 ccctga 228  Q
     |||||    
T  18372666 tcctga 18372671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 38 - 227
Target Start/End: Complemental strand, 50258731 - 50258542
Alignment:
Q  38 gtgggggttcctcatgtatacggtagtcattttcatc-tctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaaca 136  Q
    |||||||||||||||| ||||  |||||||||||| | || |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  50258731 gtgggggttcctcatgcatacaatagtcattttcaccctccgggtgtaccgcatatatacgacaccttgtatttattttttaaaaaatataaatagaaca 50258632  T
Q  137 ttgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 227  Q
    | ||||||||         |||||||||||||||||||||  |||||||| || ||||||||||||||||||||||||||| |||||||||    
T  50258631 tcgctctttttaaaaaaa-tatgttttgattttatcactgatctcttttcgttcccagagccgagcctccgaattctcaggaacggccctg 50258542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 27 - 146
Target Start/End: Complemental strand, 9878805 - 9878686
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||| ||||| ||||||||||| ||||||||| |||||||||||| || |||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  9878805 tttggcgttagatgggggttccttatgtatacgatagtcattttcacctttgggtgtaccgcatatatactgcaccttatatttatcttttaaaaaatat 9878706  T
Q  127 aaatagaacattgctctttt 146  Q
    |||||||| |||||||||||    
T  9878705 aaatagaatattgctctttt 9878686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 29620504 - 29620423
Alignment:
Q  29 tggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtattt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||    
T  29620504 tggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctggatataccgcatatatacggcaccttgtattt 29620423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 27 - 221
Target Start/End: Original strand, 48157127 - 48157310
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||| ||||| ||||||||||||||||||||| ||||||||||||| || ||||||||||||          |||||| |||||||||||||||||||||    
T  48157127 tttgatgttaagtgggggttcctcatgtatacagtagtcattttcacctttgggtgtaccgc----------caccttatatttatcttttaaaaaatat 48157216  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacg 221  Q
    ||||||| ||||||  ||||        |  |||||||||||||||||||||||||||| ||| || || ||||||||||||||||| |||||||    
T  48157217 aaatagatcattgcattttttttaaaaatg-tgttttgattttatcactggcctctttttattcccggaaccgagcctccgaattcttagggacg 48157310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 54574929 - 54574826
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    ||||||||||||||| |||||| ||||| |  | |||||||||||||||||||||| ||||||||||||| |||| |||||| |||||||||||||| ||    
T  54574929 ggttcctcatgtatatggtagtgatttttacttttgggtgtaccgcatatatacggtaccttgtatttatattttgaaaaatttaaatagaacattgttc 54574830  T
Q  143 tttt 146  Q
    ||||    
T  54574829 tttt 54574826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 43 - 138
Target Start/End: Original strand, 8420330 - 8420425
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatt 138  Q
    |||||||| | ||||||| ||| |||||||  | |||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8420330 ggttcctcgtatatacggcagtgattttcacatttgggtgtacaacatatatacggcaccttgtatttatcttttaaaaaatttaaatagaacatt 8420425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 26279563 - 26279649
Alignment:
Q  60 gtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 146  Q
    ||||| |||||||||| ||||||||  ||||||||||| |||||| ||||||||||||||||||| |||||||||||||| ||||||    
T  26279563 gtagtgattttcatctttgggtgtattgcatatatacgacaccttctatttatcttttaaaaaatttaaatagaacattgttctttt 26279649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 29620426 - 29620364
Alignment:
Q  165 attttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 227  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29620426 attttatcactgacctcttttcattcccagagccgagcctccgaattctcagggacggccctg 29620364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 32319257 - 32319162
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatt 138  Q
    |||||||| | |||| | |||| ||||||| || ||||||||||||||||||||  ||| |||||||||||||||||||||| |||||||||||||    
T  32319257 ggttcctcgtatataagatagtaattttcacctttgggtgtaccgcatatatacaacactttgtatttatcttttaaaaaatttaaatagaacatt 32319162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 43 - 145
Target Start/End: Original strand, 25855426 - 25855527
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    ||||| || ||||||||||||| ||||||| || |||||| ||  |||||||||| ||||||||| |||||||||||||||| |||||||||||||| ||    
T  25855426 ggttcttcgtgtatacggtagtgattttcaactttgggtgcactacatatatacgacaccttgta-ttatcttttaaaaaatttaaatagaacattgttc 25855524  T
Q  143 ttt 145  Q
    |||    
T  25855525 ttt 25855527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 28689458 - 28689368
Alignment:
Q  48 ctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatt 138  Q
    ||||||||||||| ||| ||||||| || ||| | || ||||||||||||||||||||||||||||||||  ||||| |||||||||||||    
T  28689458 ctcatgtatacggcagtgattttcacctttggatatatcgcatatatacggcaccttgtatttatctttttgaaaatttaaatagaacatt 28689368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 49393099 - 49393195
Alignment:
Q  48 ctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttt 145  Q
    ||||||||||||||||| ||||| | || |||||||||  |||||||||| | |||||||||||||||||||||||| |||| ||||||||| |||||    
T  49393099 ctcatgtatacggtagtaatttttacctttgggtgtaca-catatatacgacgccttgtatttatcttttaaaaaatttaaagagaacattgttcttt 49393195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 48720497 - 48720429
Alignment:
Q  159 gttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 227  Q
    |||||||||||||||||  |||||||||||| |||||||||||||||| |||||| |||||||||||||    
T  48720497 gttttgattttatcacttacctcttttcattcccagagccgagcctcccaattcttagggacggccctg 48720429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 23641382 - 23641329
Alignment:
Q  81 tgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaa 134  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  23641382 tgtaccgcatatatacgacacattgtatttatcttttaaaaaatataaatagaa 23641329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 42453444 - 42453511
Alignment:
Q  79 ggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 146  Q
    |||||| |||||||||| | |||||||||||||||||||||||||| ||||| |||||||| ||||||    
T  42453444 ggtgtatcgcatatatatgacaccttgtatttatcttttaaaaaatttaaattgaacattgttctttt 42453511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 43 - 145
Target Start/End: Original strand, 789940 - 790042
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    ||||||||||||||| ||| || ||||| | || |||||||||  |||||||| | ||||||||||||||  |||||||||| ||||||||| |||| ||    
T  789940 ggttcctcatgtatatggtggtgatttttacctttgggtgtacaacatatatatgacaccttgtatttattgtttaaaaaatttaaatagaagattgttc 790039  T
Q  143 ttt 145  Q
    |||    
T  790040 ttt 790042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 29598113 - 29598179
Alignment:
Q  45 ttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttat 112  Q
    |||||||||||||||||||| |||| ||||| || ||||| | ||||||||||| |||||||||||||    
T  29598113 ttcctcatgtatacggtagtgattt-catctttgagtgtatcacatatatacggaaccttgtatttat 29598179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 52374660 - 52374763
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    ||||| |||||||||||||||| ||||||  || | | |||| ||||| |||||| ||| |||||||||| |   ||||||| |||||||||||||| ||    
T  52374660 ggttcttcatgtatacggtagtgattttctcctttagatgtatcgcatctatacgacacattgtatttatttaaaaaaaaatttaaatagaacattgttc 52374759  T
Q  143 tttt 146  Q
    ||||    
T  52374760 tttt 52374763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 2952339 - 2952137
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2952339 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcactttgtatttatcttttaaaaaatat 2952240  T
Q  127 aaatagaacattgctctttt--nnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggcc 224  Q
    ||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2952239 aaatagaacattgctctttttaaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggcc 2952140  T
Q  225 ctg 227  Q
    |||    
T  2952139 ctg 2952137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 27 - 224
Target Start/End: Original strand, 30883314 - 30883512
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30883314 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcacattgtatttatcttttaaaaaatat 30883413  T
Q  127 aaatagaacattgctctttt-nnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggcc 224  Q
    ||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30883414 aaatagaacattgctcttttaaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagccgagcctctgaattctcagggacggcc 30883512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 3048635 - 3048435
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3048635 tttggtgttaggtgagggttcctcgtgtatacggtagtcattttcatctctaggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 3048536  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    |||||| | |||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3048535 aaatagtatattgctcttttaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagagacggccct 3048436  T
Q  227 g 227  Q
    |    
T  3048435 g 3048435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 45475802 - 45476001
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45475802 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctatgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 45475901  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||||||||         || ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||    
T  45475902 aaatagaacattgctcttttaaaaaaaa-tacgttttgattttatcactggcctcttttcattccccgagccgagcctccgaattctcagggatggccct 45476000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 27 - 224
Target Start/End: Complemental strand, 13534804 - 13534609
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13534804 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggca-cttgtatttatcttttaaaaaatat 13534706  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggcc 224  Q
    ||||||||||||||||||||         || ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  13534705 aaatagaacattgctcttttaaaaaaaa-tacgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattttcagggacggcc 13534609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 27 - 224
Target Start/End: Complemental strand, 13624344 - 13624149
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13624344 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggca-cttgtatttatcttttaaaaaatat 13624246  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggcc 224  Q
    ||||||||||||||||||||         || ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  13624245 aaatagaacattgctcttttaaaaaaaa-tacgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattttcagggacggcc 13624149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 23606747 - 23606546
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23606747 tttggtgttaggtgggggttcctcatgtatacggtagtcatttttacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatat 23606648  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||||||||         || ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  23606647 aaatagaacattgctcttttaaaaaaaa-tacgttttgattttatcactggtctcttttcattcccagagccgagcctccgaattcttagggacggccct 23606549  T
Q  227 gat 229  Q
    |||    
T  23606548 gat 23606546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 37430276 - 37430076
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||| ||| ||||||||||||||||||||||||||||| | |||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  37430276 tttggtgttacgtgagggttcctcatgtatacggtagtcatttttacctctaggtgtaacgcatatatacggcaccttgtatttatcttttaaaaaatat 37430177  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||| ||||||||          | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37430176 aaatagaacatcgctcttttaaaaaaaaaaacgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattctcagggacggccct 37430077  T
Q  227 g 227  Q
    |    
T  37430076 g 37430076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 27 - 228
Target Start/End: Complemental strand, 23798379 - 23798178
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23798379 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacttttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatat 23798280  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    |||||||||||||||||||          || ||||||||||||||| || ||||||||| || ||||||||||||||||||||||| ||||||||||||    
T  23798279 aaatagaacattgctctttaaaaaaaatatacgttttgattttatcattgacctcttttcgttcccagagccgagcctccgaattcttagggacggccct 23798180  T
Q  227 ga 228  Q
    ||    
T  23798179 ga 23798178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 42600767 - 42600967
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  42600767 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccacatatatacggcaccttatatttatcttttaaaaaatat 42600866  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||| ||||||| ||||          | |||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  42600867 aaatagatcattgcttttttaaaaaaaaaaacgttttgattttatcactgacctcttttcattttcagagccgagcctccgaattcttagggacggccct 42600966  T
Q  227 g 227  Q
    |    
T  42600967 g 42600967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 27 - 216
Target Start/End: Complemental strand, 5860862 - 5860671
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||| |||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5860862 tttggtgttaggttggggtttctcatgtatatggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 5860763  T
Q  127 aaatagaacattgctcttt--tnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcag 216  Q
    |||||||||||||||||||           ||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||    
T  5860762 aaatagaacattgctctttaaaaataaatattatgttttgattttatcattgacctcttttcatttccagagccgagcctccaaattctcag 5860671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 10917376 - 10917575
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10917376 tttggtgttaggtgggggttcctcatgtataaggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatat 10917475  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||| ||||| | ||||         || |||||||||||||||||||||||||||||||  |||||||||||||||||||||| | |||| |||||    
T  10917476 aaatagatcattg-ttttttttaaaaaaatacgttttgattttatcactggcctcttttcattctcagagccgagcctccgaattcttaaggacagccct 10917574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 41879166 - 41879364
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||| || ||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  41879166 tttggtgttaggtgggggtttctcatgtattcggtagtcattttcacctttggatgtaccgcatatatacggtaccttgtatttatcttttaaaaaatat 41879265  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||| ||||||         || ||||| |||||||||||  |||||||||||| |||||||||||||| |||||||||||||||||||||    
T  41879266 aaatagaacattgttcttttaaaaaaa--tacgttttaattttatcactaacctcttttcattcccagagccgagccttcgaattctcagggacggccct 41879363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 5973209 - 5973106
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    |||||||| ||||||||||| | |||||||||| |||||||||  |||||||||| |||||||||||||||||||||||||| |||||||||||||| ||    
T  5973209 ggttcctcgtgtatacggtaatgattttcatctatgggtgtacaacatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattgttc 5973110  T
Q  143 tttt 146  Q
    ||||    
T  5973109 tttt 5973106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 7944624 - 7944521
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    |||||||||||||||||||||| ||||||| || |||||||||  ||||||||||||||||||||||||| ||||||||||| |||||| ||||||| ||    
T  7944624 ggttcctcatgtatacggtagtgattttcacctttgggtgtacaacatatatacggcaccttgtatttattttttaaaaaatttaaataaaacattgttc 7944525  T
Q  143 tttt 146  Q
    ||||    
T  7944524 tttt 7944521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 43 - 138
Target Start/End: Original strand, 8102913 - 8103008
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatt 138  Q
    |||||||||||||||||||| | ||||||| || | |||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||    
T  8102913 ggttcctcatgtatacggtaatgattttcacctttaggtgtaccgcatatatactgcaccttgtatttatcttttaaaaaatttaaatataacatt 8103008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 11290185 - 11290288
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    |||| ||||||||||||||||| ||||||| || || ||||||  |||||||||| |||||||||||||||||||||||||| |||||| ||||||| ||    
T  11290185 ggttgctcatgtatacggtagtgattttcacctttgagtgtacaacatatatacgacaccttgtatttatcttttaaaaaatttaaataaaacattgttc 11290284  T
Q  143 tttt 146  Q
    ||||    
T  11290285 tttt 11290288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 43 - 145
Target Start/End: Complemental strand, 39332507 - 39332405
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    |||||||||||||||||||||| ||||||| || ||| |||||||| |||||| | ||||||||||||||||||| |||||  |||||||||||||| ||    
T  39332507 ggttcctcatgtatacggtagtgattttcacctttggatgtaccgcttatatatgacaccttgtatttatctttttaaaaaattaaatagaacattgttc 39332408  T
Q  143 ttt 145  Q
    |||    
T  39332407 ttt 39332405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 5942697 - 5942777
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaa 123  Q
    |||||||||||||||||||||| ||||||| || ||||||||||||| ||||||| || ||||||||||||||||||||||    
T  5942697 ggttcctcatgtatacggtagtgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaaa 5942777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 20003796 - 20003728
Alignment:
Q  159 gttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 227  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||    
T  20003796 gttttgattttatcactggcctcttttcattccccgagccgagcctccaaattctcagggacggccctg 20003728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 15167517 - 15167414
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    ||||||||||||||||| |||| |||||||  | |||||||| |||||||||||  ||| || ||||||||||||||||||| |||||||||||||| ||    
T  15167517 ggttcctcatgtatacgatagtgattttcacatttgggtgtatcgcatatatacaacactttatatttatcttttaaaaaatttaaatagaacattgttc 15167418  T
Q  143 tttt 146  Q
    ||||    
T  15167417 tttt 15167414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 43 - 137
Target Start/End: Original strand, 5721560 - 5721654
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacat 137  Q
    ||||||||| |||||||||||| |||||||  | |||||||||||  |||||| |||||||||||||||||||||||||||  ||||||||||||    
T  5721560 ggttcctcaggtatacggtagtgattttcacttttgggtgtaccgattatatagggcaccttgtatttatcttttaaaaaaattaaatagaacat 5721654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 43 - 212
Target Start/End: Complemental strand, 41677276 - 41677106
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaa-aaaatataaatagaacattgct 141  Q
    |||||||||||||||| ||||| ||||||| || | | |||| |||||||||||| || |||||||||||||||||| ||||| |||||||||||||| |    
T  41677276 ggttcctcatgtatacagtagtgattttcacctttagatgtatcgcatatatacgacatcttgtatttatcttttaaaaaaatttaaatagaacattgtt 41677177  T
Q  142 cttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattc 212  Q
    |||||         || ||||| ||||||| |  || ||||||||| |  |||||||||||||||||||||    
T  41677176 cttttaaaaaaaaatacgtttttattttattataggtctcttttcactcacagagccgagcctccgaattc 41677106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 138
Target Start/End: Original strand, 15078759 - 15078854
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatt 138  Q
    ||||||||||||||||| |||| |||||||  | ||||||||  |||||||||| ||||||| ||||||||||||||||| | |||||||||||||    
T  15078759 ggttcctcatgtatacgatagtgattttcacatttgggtgtatagcatatatacagcaccttatatttatcttttaaaaattttaaatagaacatt 15078854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 48 - 146
Target Start/End: Complemental strand, 34789959 - 34789861
Alignment:
Q  48 ctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 146  Q
    ||||||||||||||||| ||||||| || |||||||||  |||||||||| || |||||||||||||||||| | || |||||||||||| | ||||||    
T  34789959 ctcatgtatacggtagtgattttcacctttgggtgtacaacatatatacgacatcttgtatttatcttttaagagatttaaatagaacatcgttctttt 34789861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 51 - 146
Target Start/End: Original strand, 8646215 - 8646309
Alignment:
Q  51 atgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 146  Q
    |||||||||||||| |||||||  | || |||||  |||||||||||  ||||||||||||||||||||||||| |||||||||||||| ||||||    
T  8646215 atgtatacggtagtgattttcacatttgcgtgtat-gcatatatacgataccttgtatttatcttttaaaaaatttaaatagaacattgttctttt 8646309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 25561595 - 25561502
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatt 138  Q
    |||||||||||||||||| ||| |||||||  | ||||| || |||||||||||||||||||||||||||| ||||||| || |||||||||||||    
T  25561595 ggttcctcatgtatacggcagtgattttcacatttgggt-tatcgcatatatacggcaccttgtatttatc-tttaaaagatttaaatagaacatt 25561502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 23941170 - 23941097
Alignment:
Q  66 attttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattg 139  Q
    |||||||||| |||||||| ||| |||||| | |||||||||||||||||||||||||| |||||| |||||||    
T  23941170 attttcatctttgggtgtatcgcttatatatgacaccttgtatttatcttttaaaaaatttaaataaaacattg 23941097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 30674482 - 30674403
Alignment:
Q  66 attttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttt 145  Q
    ||||||| || || ||||| |||||||||||| |||||| |||||||||||||||| || |||||||||||||| |||||    
T  30674482 attttcacctttgagtgtatcgcatatatacgacaccttatatttatcttttaaaacatttaaatagaacattgttcttt 30674403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 34048806 - 34048705
Alignment:
Q  46 tcctcatgtatacggtagtcattttcatctctgggtgtacc--gcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctct 143  Q
    ||||||||||||| ||||| |||||||||| |||||||| |    ||||||||| ||| |||||||||||||||||||  | |||||||||||||| |||    
T  34048806 tcctcatgtatacagtagtgattttcatctttgggtgtatcatatatatatacgacacattgtatttatcttttaaaatgtttaaatagaacattgttct 34048707  T
Q  144 tt 145  Q
    ||    
T  34048706 tt 34048705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 145
Target Start/End: Complemental strand, 14510084 - 14509983
Alignment:
Q  43 ggttcctcatgtatacggtagtcatttt-catctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgct 141  Q
    |||| ||||||||||||||||| ||||| ||  | |||||||||||  |||||||| |||||| ||||| ||||||||||||| ||||| |||||||| |    
T  14510084 ggttactcatgtatacggtagtgatttttcacatttgggtgtaccg--tatatacgacaccttatatttgtcttttaaaaaatttaaattgaacattgtt 14509987  T
Q  142 cttt 145  Q
    ||||    
T  14509986 cttt 14509983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 9108551 - 9108596
Alignment:
Q  100 accttgtatttatcttttaaaaaatataaatagaacattgctcttt 145  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||    
T  9108551 accttgtatttatcttttaaaaaatttaaatagaacattgttcttt 9108596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 34868223 - 34868184
Alignment:
Q  99 caccttgtatttatcttttaaaaaatataaatagaacatt 138  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  34868223 caccttgtatttatcttttaaaaaatttaaatagaacatt 34868184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 5757117 - 5757153
Alignment:
Q  79 ggtgtaccgcatatatacggcaccttgtatttatctt 115  Q
    ||||| |||||||||||||||||||||||||||||||    
T  5757117 ggtgttccgcatatatacggcaccttgtatttatctt 5757153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 38009191 - 38009151
Alignment:
Q  106 tatttatcttttaaaaaatataaatagaacattgctctttt 146  Q
    ||||||||||||||||| | |||||||||||||| ||||||    
T  38009191 tatttatcttttaaaaattttaaatagaacattgttctttt 38009151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 1e-85; HSPs: 47)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 27 - 219
Target Start/End: Complemental strand, 34756481 - 34756289
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34756481 tttgttgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 34756382  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcaggga 219  Q
    ||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34756381 aaatagaacattgctcttttaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcaggga 34756289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 27 - 229
Target Start/End: Original strand, 27078996 - 27079199
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27078996 tttggtgttaggtgggggttcctcatgtatacagtagtcattttcacctttaggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 27079095  T
Q  127 aaatagaacattgctctttt-nnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccc 225  Q
    ||||||||||||||||||||          || |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  27079096 aaatagaacattgctcttttaaaaaaaaaatacgttttgattttatcactggcctcttttcattctcagagccgagcctccgaattctcagggacggccc 27079195  T
Q  226 tgat 229  Q
    ||||    
T  27079196 tgat 27079199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 15480204 - 15480006
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  15480204 tttggtgttaggtgggggttcctcatgcatacggtagtcattttcacctctgggtgtaccgcatatatacgacatcttgtatttatcttttaaaaaatat 15480105  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||| | |||||          |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15480104 aaatagaacatcggtcttt--aaaaaaaatatgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattctcagggacggccct 15480007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 27 - 223
Target Start/End: Original strand, 19523184 - 19523380
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19523184 tttggtgttaggtgggggttcctcatgtatatggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 19523283  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggc 223  Q
    ||||||||||  |||||||           | ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  19523284 aaatagaacaccgctctttaaaaaaaaaacacgttttgattttatcactggtctcttttcattcccagagccgagcctccgaattctcagggacggc 19523380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 36187994 - 36187795
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36187994 tttggtgttaggtggaggtttctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatattttaaaaaatat 36187895  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||| ||||||||          | |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36187894 aaatagaacatcgctcttttaaaaaaaa-aacgttttgattttatcactgacctcttttcattcccagagccgagcctccgaattctcagggacggccct 36187796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 27 - 222
Target Start/End: Original strand, 2274875 - 2275070
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||  |||||||||||||||||||||||||||    
T  2274875 tttggtgttaggtgggggttcctcgtgtatacggtagtcattttcacctctgggtgtactgcatatatacgataccttgtatttatcttttaaaaaatat 2274974  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacgg 222  Q
    ||||||||||| ||||||||         || ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  2274975 aaatagaacatcgctcttttaaaaaaaaatacgttttgattttatcactggcctcttttcattcccagaaccgagcctccgaattctcagggacgg 2275070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 16592189 - 16591988
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||| |||||||    
T  16592189 tttggtgttaggtgggggttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccctgtatttatcttttagaaaatat 16592090  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||||||||         |||||||||||||||||| |||||||||||||||  ||||||||||||||| |||||||| ||||||||||    
T  16592089 aaatagaacattgctcttttaaaaaaaa-tatgttttgattttatcattggcctcttttcattctcagagccgagcctccaaattctcaaggacggccct 16591991  T
Q  227 gat 229  Q
    |||    
T  16591990 gat 16591988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 38869478 - 38869277
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  38869478 tttggtgttaggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatat 38869379  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||||||||         || ||||||||||||| |||| |||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  38869378 aaatagaacattgctcttttaaaaaaaa-tacgttttgattttataactgacctcttttcattcccagagccgagcctccgaattcttagggacggccct 38869280  T
Q  227 gat 229  Q
    |||    
T  38869279 gat 38869277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 16198909 - 16198709
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||| |||||| |||||||||||||||||||||    
T  16198909 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtatcgcatatatacgacaccttatatttatcttttaaaaaatat 16198810  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||| |||          || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||    
T  16198809 aaatagaacattgctttttaaaaaaaaaatacgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattcttagggaaggccct 16198710  T
Q  227 g 227  Q
    |    
T  16198709 g 16198709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 27 - 224
Target Start/End: Original strand, 30854314 - 30854511
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30854314 tttggtgttaggtgggggttcctcatgtatacgatagtcattttcacctctgagtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 30854413  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggcc 224  Q
    ||||||||||||||||||||         || ||||| |||||||| ||| ||| |||||||| |||||||||||||||| |||| ||||||||||||    
T  30854414 aaatagaacattgctcttttaaaaaaaaatacgttttaattttatcgctgaccttttttcattcccagagccgagcctccaaattatcagggacggcc 30854511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 9364276 - 9364476
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9364276 tttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatat 9364375  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||| ||           || ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||  ||||||    
T  9364376 aaatagaacattgcttttaaaaaaaaaaatacgttttgattttatcactggcctcttttcattcccagagctgagcctccgaattcttaggggtggccct 9364475  T
Q  227 g 227  Q
    |    
T  9364476 g 9364476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 42 - 232
Target Start/End: Complemental strand, 22986658 - 22986468
Alignment:
Q  42 gggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgct 141  Q
    ||||| ||||||||||||||||||||||||| || ||||||||||||||||||||| ||| |||||||| ||||||||||||||| ||||||||||||||    
T  22986658 gggtttctcatgtatacggtagtcattttcacctatgggtgtaccgcatatatacgacactttgtatttgtcttttaaaaaatattaatagaacattgct 22986559  T
Q  142 cttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctgataat 232  Q
    |||||        ||| |||||||||||||||||||||||||||||||  |||||| ||||||||||||||||| ||||||||||||||||    
T  22986558 cttttaaaaaaaattacgttttgattttatcactggcctcttttcattctcagagctgagcctccgaattctcacggacggccctgataat 22986468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 47 - 227
Target Start/End: Complemental strand, 31194706 - 31194528
Alignment:
Q  47 cctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 146  Q
    |||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31194706 cctcatgtatacggtagt-attttcacctctgggtttaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 31194608  T
Q  147 nnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 227  Q
             || ||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  31194607 aaaagaaa-tacgttttgattttatcactggtctcttttcattcccagagccgagcctccgaattttcagggacggccctg 31194528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 27 - 226
Target Start/End: Complemental strand, 28822457 - 28822253
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28822457 tttggtgttaggtgggggttcatcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatat 28822358  T
Q  127 aaatagaacattgctctttt-----nnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacg 221  Q
    ||||||||||||||||||||              || |||||||||||||||||  |||||||||||| ||| |||||| |||||||||||| |||||||    
T  28822357 aaatagaacattgctcttttaaaaaaaaaaaaaatacgttttgattttatcactaacctcttttcattcccaaagccgaacctccgaattcttagggacg 28822258  T
Q  222 gccct 226  Q
    |||||    
T  28822257 gccct 28822253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 16799442 - 16799240
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  16799442 tttggtgttatgtgggggttcctcatgtatacggtaatcattttcacctttgggtgtaccgcatatatacggcaccttatatttattttttaaaaaatat 16799343  T
Q  127 aaatagaaca-ttgctctttt-nnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggcc 224  Q
    |||||||||| || |||||||          || |||||||||||||||||| | |||||||||| ||||||||||||||||||||||| ||||||||||    
T  16799342 aaatagaacatttactcttttaaaaaaaaaatacgttttgattttatcactgacatcttttcattcccagagccgagcctccgaattcttagggacggcc 16799243  T
Q  225 ctg 227  Q
    |||    
T  16799242 ctg 16799240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 27 - 229
Target Start/End: Original strand, 27924067 - 27924269
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||| ||| ||||||||||||||||||||||||||| | || ||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  27924067 tttggtgttaggcgggcgttcctcatgtatacggtagtcatttttacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaaatat 27924166  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||  ||||||| ||||         || |||||||||||||||||||||||||||||||  ||||| |||||| ||||||||| ||  ||||||||    
T  27924167 aaataggtcattgcttttttttaaaaaaatacgttttgattttatcactggcctcttttcattctcagagtcgagcccccgaattcttagaaacggccct 27924266  T
Q  227 gat 229  Q
    |||    
T  27924267 gat 27924269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 7670909 - 7671118
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatctttt-aaaaaata 125  Q
    ||||||||||||||||| | |||||||||||||||||||||||||| || ||||||||||| | |||||||||||||| |||||||||||| ||||||||    
T  7670909 tttggtgttaggtggggatacctcatgtatacggtagtcattttcacctttgggtgtaccgtaaatatacggcaccttatatttatcttttaaaaaaata 7671008  T
Q  126 taaatagaacattgctctttt--------nnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagg 217  Q
    |||||||||||||||| ||||                 || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |    
T  7671009 taaatagaacattgctttttttttttaaaaaaaaaaaatacgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattcttaag 7671108  T
Q  218 gacggccctg 227  Q
    ||||||||||    
T  7671109 gacggccctg 7671118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 47 - 229
Target Start/End: Complemental strand, 31881528 - 31881346
Alignment:
Q  47 cctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 146  Q
    |||||||||||||||||| |||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31881528 cctcatgtatacggtagt-attttcatctctggatgttccgcatatatacggcaccgtgtatttatcttttaaaaaatataaatagaacattgctctttt 31881430  T
Q  147 -nnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctgat 229  Q
               | ||||||||||||| |||| || ||||||||| |||||||||||||||  |||| |||||||||||||||||    
T  31881429 aaaaaaaaaaaacgttttgattttattactgaccacttttcattcccagagccgagcctctaaattttcagggacggccctgat 31881346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 40 - 183
Target Start/End: Complemental strand, 23284164 - 23284022
Alignment:
Q  40 gggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattg 139  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||   |||||||||||||||||||||||||    
T  23284164 gggggttcctcatgtatacggtagtcattttcatctttgggtgtaccgcatatatacgacaccttgtatttagtctttaaaaaatataaatagaacattg 23284065  T
Q  140 ctcttttnnnnnnnnttatgttttgattttatcactggcctctt 183  Q
    |||||||         || |||||||||||||||||||||||||    
T  23284064 ctcttttaaaaaaaa-tacgttttgattttatcactggcctctt 23284022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 40389647 - 40389537
Alignment:
Q  31 gtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaat 130  Q
    ||||||||||||||||||||||  |||||||||||||||||| || ||| ||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  40389647 gtgttaggtgggggttcctcataaatacggtagtcattttcacctttggatgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaat 40389548  T
Q  131 agaacattgct 141  Q
    |||||||||||    
T  40389547 agaacattgct 40389537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 64 - 213
Target Start/End: Original strand, 7338021 - 7338170
Alignment:
Q  64 tcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnttatgtttt 163  Q
    ||||||||| || | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||           | |||||    
T  7338021 tcattttcacctttaggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctttaaaaaaaaaaaacgtttt 7338120  T
Q  164 gattttatcactggcctcttttcatttccagagccgagcctccgaattct 213  Q
    |||||||||  || |||||||||||| | |||||||||||||| ||||||    
T  7338121 gattttatccttgacctcttttcattcctagagccgagcctccaaattct 7338170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 43 - 145
Target Start/End: Complemental strand, 14318484 - 14318382
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    |||||||||||||||||||||| |||||||| | ||| |||| | |||||||||| |||||||||||||||||||||||||| |||||||||||||| ||    
T  14318484 ggttcctcatgtatacggtagtgattttcatttttggatgtatcacatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattgttc 14318385  T
Q  143 ttt 145  Q
    |||    
T  14318384 ttt 14318382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 36868973 - 36868872
Alignment:
Q  45 ttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 144  Q
    |||||||||||||||||||| |||||||  | |||||||||| |||||||||| |||||||||||||||||||||||||  |||||||||||||| ||||    
T  36868973 ttcctcatgtatacggtagtgattttcacatttgggtgtaccacatatatacgacaccttgtatttatcttttaaaaaaattaaatagaacattgttctt 36868874  T
Q  145 tt 146  Q
    ||    
T  36868873 tt 36868872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 46 - 146
Target Start/End: Complemental strand, 2024738 - 2024638
Alignment:
Q  46 tcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttt 145  Q
    |||||||||||| |||||| |||||||||| |||||||| | |||||||||||||| |||||||||||||| ||||||| |||||||||||||| |||||    
T  2024738 tcctcatgtatatggtagtgattttcatctttgggtgtatcacatatatacggcacattgtatttatctttaaaaaaatttaaatagaacattgttcttt 2024639  T
Q  146 t 146  Q
    |    
T  2024638 t 2024638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 34425904 - 34426007
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    |||||||||||||||||||| | ||||| |||| | |||||| | |||||||||||||||||||||||||||||||||||||  ||||||||||||| ||    
T  34425904 ggttcctcatgtatacggtaatgattttaatctttaggtgtatcacatatatacggcaccttgtatttatcttttaaaaaattgaaatagaacattgttc 34426003  T
Q  143 tttt 146  Q
    ||||    
T  34426004 tttt 34426007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 2530996 - 2530901
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatt 138  Q
    |||||||||||||||| ||||| ||||||| || ||| ||||||| ||||||||| ||| |||||||||||||||||||||  |||||||||||||    
T  2530996 ggttcctcatgtatacagtagtgattttcacctttggatgtaccgtatatatacgacacattgtatttatcttttaaaaaacttaaatagaacatt 2530901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 46 - 138
Target Start/End: Complemental strand, 26719045 - 26718953
Alignment:
Q  46 tcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatt 138  Q
    ||||||||||| ||||||| ||||||| || || ||||| |||||||||||| ||| |||||||||||||||||||| | |||||||||||||    
T  26719045 tcctcatgtatgcggtagtgattttcacctttgagtgtatcgcatatatacgacactttgtatttatcttttaaaaattttaaatagaacatt 26718953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 46 - 138
Target Start/End: Complemental strand, 26988789 - 26988697
Alignment:
Q  46 tcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatt 138  Q
    ||||||||||| ||||||| ||||||| || || ||||| |||||||||||| ||| |||||||||||||||||||| | |||||||||||||    
T  26988789 tcctcatgtatgcggtagtgattttcacctttgagtgtatcgcatatatacgacactttgtatttatcttttaaaaattttaaatagaacatt 26988697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 1366625 - 1366522
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    |||||||||| ||||||||||| |||||||  | | |||||| |||||||||||  || |||||||||||||| |||||||| |||||||||||||| ||    
T  1366625 ggttcctcatatatacggtagtgattttcacatttaggtgtatcgcatatataccacatcttgtatttatcttataaaaaatttaaatagaacattgttc 1366526  T
Q  143 tttt 146  Q
    ||||    
T  1366525 tttt 1366522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 11242417 - 11242314
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    |||||||||||||||||||||| |||| ||||| ||| |||| | |||||||||  ||  |||||||||||||||||||||  |||||||||||||| ||    
T  11242417 ggttcctcatgtatacggtagtgatttccatctttggttgtatcacatatatacatcattttgtatttatcttttaaaaaaattaaatagaacattgttc 11242318  T
Q  143 tttt 146  Q
    ||||    
T  11242317 tttt 11242314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 33037781 - 33037884
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    |||||||||||||||||||| |  |||||| || |||||||||  ||||||||||  | ||||||||||||||||||||||| |||||| ||||||| ||    
T  33037781 ggttcctcatgtatacggtaatggttttcacctttgggtgtacaacatatatacgatatcttgtatttatcttttaaaaaatttaaataaaacattgttc 33037880  T
Q  143 tttt 146  Q
    ||||    
T  33037881 tttt 33037884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 43 - 145
Target Start/End: Original strand, 2412089 - 2412191
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    |||||||||||||||| ||||| |||||||  | ||| || | |||||||||||| ||| |||||||||| ||||||||||| |||||||||||||| ||    
T  2412089 ggttcctcatgtatacagtagtgattttcacatttggatgcatcgcatatatacgacactttgtatttattttttaaaaaatttaaatagaacattgttc 2412188  T
Q  143 ttt 145  Q
    |||    
T  2412189 ttt 2412191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 43 - 212
Target Start/End: Complemental strand, 40794426 - 40794257
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    |||| ||||||||||||||||| ||||||| || | |||||| |  |||| |||||| | |||||||| ||||||||||||| |||||| ||||||| ||    
T  40794426 ggtttctcatgtatacggtagtgattttcaccttttggtgtatcatatatttacggctctttgtatttgtcttttaaaaaatttaaataaaacattgttc 40794327  T
Q  143 ttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattc 212  Q
    ||||          | ||||| ||||||| ||  ||||||||||| || |||||||||||||||||||||    
T  40794326 ttttaaaaaaaaaaacgtttttattttattacgagcctcttttcacttacagagccgagcctccgaattc 40794257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 138
Target Start/End: Original strand, 24395741 - 24395835
Alignment:
Q  44 gttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatt 138  Q
    ||||||||| |||||||| || ||||||| || ||| ||||  | ||||||||  |||||||||||||||||||||||||| |||||||||||||    
T  24395741 gttcctcatctatacggtggtgattttcacctttggatgtattgtatatatacaacaccttgtatttatcttttaaaaaatttaaatagaacatt 24395835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 45 - 146
Target Start/End: Original strand, 10407464 - 10407565
Alignment:
Q  45 ttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 144  Q
    ||||||||| |||||||||| |||||||  | | | |||||  ||||| |||| |||||||| ||||||||||||||||| |||||||||||||| ||||    
T  10407464 ttcctcatgcatacggtagtaattttcacttttagatgtacaacatatgtacgacaccttgtgtttatcttttaaaaaatttaaatagaacattgttctt 10407563  T
Q  145 tt 146  Q
    ||    
T  10407564 tt 10407565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 15639644 - 15639724
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaa 123  Q
    ||||||| |||||||||  ||| |||||||||| ||| |||| |||||||||||| |||||||||||||||||| ||||||    
T  15639644 ggttccttatgtatacgacagtgattttcatctttggatgtatcgcatatatacgtcaccttgtatttatctttaaaaaaa 15639724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 23284011 - 23283943
Alignment:
Q  159 gttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 227  Q
    ||||||||||||||||||||||||||||||| | | | | ||||||| |||||||||||||||||||||    
T  23284011 gttttgattttatcactggcctcttttcattcctaaaactgagcctctgaattctcagggacggccctg 23283943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 51 - 138
Target Start/End: Original strand, 10543682 - 10543769
Alignment:
Q  51 atgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatt 138  Q
    |||||||||||||| ||||||| || ||| |||| |||||||||||  |||||| ||||||||||||||||||| ||| | |||||||    
T  10543682 atgtatacggtagtgattttcacctttggatgtatcgcatatatacatcaccttatatttatcttttaaaaaatttaagtggaacatt 10543769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 22648824 - 22648734
Alignment:
Q  54 tatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 144  Q
    ||||| ||||| ||| ||| || ||| ||| || |||||||||| ||| |||||||||||||||||||||| |||||||||||||| ||||    
T  22648824 tatacagtagtgattgtcacctttggatgtgccacatatatacgacacattgtatttatcttttaaaaaatttaaatagaacattgttctt 22648734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 43 - 145
Target Start/End: Complemental strand, 41911716 - 41911614
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    |||||||||| |||||| |||| ||||| |  | |||||||||||| |||||||| |||||||||||| ||||||||||||  ||| | |||||||| ||    
T  41911716 ggttcctcatatatacgatagtgatttttacttttgggtgtaccgcttatatacgacaccttgtatttctcttttaaaaaaattaagttgaacattgttc 41911617  T
Q  143 ttt 145  Q
    |||    
T  41911616 ttt 41911614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 40389518 - 40389461
Alignment:
Q  162 ttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcaggga 219  Q
    ||||||||||||||| | |||||||||| ||||||||||||||||||||||| |||||    
T  40389518 ttgattttatcactgacatcttttcattcccagagccgagcctccgaattcttaggga 40389461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 17344969 - 17345053
Alignment:
Q  55 atacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattg 139  Q
    |||||||||| ||||| |||| ||||||||||||||||| | | || |||||||||||  | |||||||| ||||||||||||||    
T  17344969 atacggtagtaatttttatctttgggtgtaccgcatatacatgacatcttgtatttattatataaaaaatttaaatagaacattg 17345053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 606211 - 606258
Alignment:
Q  99 caccttgtatttatcttttaaaaaatataaatagaacattgctctttt 146  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||    
T  606211 caccttgtatttatcttttaaaaaatttaaatagaacattgttctttt 606258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 27530543 - 27530587
Alignment:
Q  102 cttgtatttatcttttaaaaaatataaatagaacattgctctttt 146  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||    
T  27530543 cttgtattaatcttttaaaaaatttaaatagaacattgttctttt 27530587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 22875003 - 22875039
Alignment:
Q  103 ttgtatttatcttttaaaaaatataaatagaacattg 139  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  22875003 ttgtatttatcttttaaaaaatttaaatagaatattg 22875039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 29143462 - 29143434
Alignment:
Q  185 tcatttccagagccgagcctccgaattct 213  Q
    |||||||||||||||||||||||||||||    
T  29143462 tcatttccagagccgagcctccgaattct 29143434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 35080806 - 35080766
Alignment:
Q  106 tatttatcttttaaaaaatataaatagaacattgctctttt 146  Q
    ||||||||||||||||||| |||||| ||||||| ||||||    
T  35080806 tatttatcttttaaaaaatttaaataaaacattgttctttt 35080766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 158; Significance: 6e-84; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 18776883 - 18776678
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18776883 tttggtgttaggtgggggtttctcatgtatacggtagtcattttcacatctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 18776784  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||||||||        |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18776783 aaatagaacattgctcttttaaaaaaaattatattttgattttatcactgacctcttttcatttccagagccgagcctccgaattctcagggacggccct 18776684  T
Q  227 gataat 232  Q
    | ||||    
T  18776683 ggtaat 18776678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 27 - 224
Target Start/End: Complemental strand, 8171656 - 8171460
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8171656 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 8171557  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggcc 224  Q
    ||||||||||||||||||||         || | |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  8171556 aaatagaacattgctcttttaaaaaaaa-tacgctttgattttatcactgacctcttttcattcccagagccgagcctccgaattctcagggacggcc 8171460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 29077205 - 29077404
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29077205 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctcttggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatat 29077304  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||||||||         || |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29077305 aaatagaacattgctcttttaaaaaaaa-tacgttttgattttatcactgacctcttttcattcccagagccgagcctccgaattctcagggacggccct 29077403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 12596404 - 12596207
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  12596404 tttggtgttaggtgggggttcctcatgcatacggtagtcattttcacctctgggtgtaccacatatatacggcaccttgtatttatctttaaaaaaatat 12596305  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||| |||||||           | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12596304 aaatagaacatcgctctttaaaaaaaa---acgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattctcagggacggccct 12596208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 20091398 - 20091197
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20091398 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatat 20091299  T
Q  127 aaatagaacattg-ctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccc 225  Q
    ||||||| |||||  | ||||         || |||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||    
T  20091298 aaatagatcattgttttttttaaaaaaaaatacgttttgattttatcactggcctcttttcattctcagagccgagcctccgaattcttagggacggccc 20091199  T
Q  226 tg 227  Q
    ||    
T  20091198 tg 20091197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 10329527 - 10329327
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||| || ||||| | || ||||||||||||||||| |||||||||||||||||||||    
T  10329527 tttggtgttaagtgggggtttctcatgtatacggtagtcattttcacctttgggttttcctcatatatacggcaccttatatttatcttttaaaaaatat 10329428  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||| ||||         || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||    
T  10329427 aaatagaacattgcttttttttaaaaaaatacgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattcttaggaacggccct 10329328  T
Q  227 g 227  Q
    |    
T  10329327 g 10329327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 23551188 - 23550986
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaa-aaaata 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||| |||||| |||||||||||||| ||||||    
T  23551188 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacgacaccttatatttatcttttaaaaaaata 23551089  T
Q  126 taaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccc 225  Q
    |||||||| ||||||| ||||         ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||| |||    
T  23551088 taaatagatcattgct-ttttttaaaaaaatatgttttgattttatcactggcctcttttcattctcagagccgagcctccgaattcttagggacgaccc 23550990  T
Q  226 tgat 229  Q
    ||||    
T  23550989 tgat 23550986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 64 - 227
Target Start/End: Original strand, 26254015 - 26254178
Alignment:
Q  64 tcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnttatgtttt 163  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||    
T  26254015 tcattttcatctttgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaaatatgtttt 26254114  T
Q  164 gattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 227  Q
    ||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||| ||||||    
T  26254115 gattttatcactgacctcttttcattcccaaagccgagcctccgaattctcagggacagccctg 26254178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 19692079 - 19692279
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||| | ||||||||||||||||||  ||||||||||| || | ||||||||||||||||| |||||||| |||||||||||||||||||||    
T  19692079 tttggtgttaggcgagggttcctcatgtatacgaaagtcattttcacctttaggtgtaccgcatatatatggcaccttatatttatcttttaaaaaatat 19692178  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||||||||         || ||||||||||||||||||| | |||||||||||||||||||||| |||||||||| ||||| ||||||    
T  19692179 aaatagaacattgctcttttaaaaaaaaatacgttttgattttatcactggacacttttcatttccagagccgagcttccgaattcttagggagggccct 19692278  T
Q  227 g 227  Q
    |    
T  19692279 g 19692279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 38414993 - 38414793
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||| |||||||||| |||||| ||||||||||||||||||||     
T  38414993 tttggtgttaggtgggggttcctcatgtatacagtagtcattttcacctttgggtgtaccacatatatacgtcaccttatatttatcttttaaaaaatac 38414894  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||| ||||||||||         || ||||||||||||| ||| | |||||||||||||||||| |||||||||||||||| ||||||| ||||    
T  38414893 aaatagaacgttgctcttttgcaaaaaaatacgttttgattttatgactagtctcttttcatttccagagtcgagcctccgaattcttagggacgaccct 38414794  T
Q  227 g 227  Q
    |    
T  38414793 g 38414793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 24525802 - 24525599
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  24525802 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacttttgggtgtaccgcatatacacggcaccttatatttatcttttaaaaaatat 24525703  T
Q  127 aaatagaacattgctctt---ttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggc 223  Q
    ||||||||||||| | ||              || |||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||| |    
T  24525702 aaatagaacattgtttttaaaaaaaaaaaaaatacgttttgattttatcacaggcctcttttcattcccagagccgagcctccgaattcttagggacgac 24525603  T
Q  224 cctg 227  Q
    ||||    
T  24525602 cctg 24525599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 48983961 - 48983756
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  48983961 tttggtgttaggtgggggttcctcatgtatacggtagttattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatat 48983862  T
Q  127 aaatagaacattgctctttt-----nnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacg 221  Q
    ||||||| ||||| | ||||              || ||||||||||||||| |||||||||||||||  |||||||||||||||||||||| |||||||    
T  48983861 aaatagatcattgttttttttaaaaaaaaaaaaatacgttttgattttatcattggcctcttttcattctcagagccgagcctccgaattcttagggacg 48983762  T
Q  222 gccctg 227  Q
    ||||||    
T  48983761 gccctg 48983756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 27 - 146
Target Start/End: Original strand, 10955469 - 10955588
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  10955469 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgagtgtaccgcatatatacggcaccttatatttatcttttaaaaaatat 10955568  T
Q  127 aaatagaacattgctctttt 146  Q
    ||||||||||| ||||||||    
T  10955569 aaatagaacatcgctctttt 10955588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 31 - 227
Target Start/End: Complemental strand, 47985083 - 47984885
Alignment:
Q  31 gtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaa-aaaatataaa 129  Q
    ||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||| ||||| |||||||| ||||||||||    
T  47985083 gtgttaggtgggggttcctcatgtatacggtggtcattttcacctttgggtgtaccgcatatatacggcaccttatatttttcttttaaaaaaatataaa 47984984  T
Q  130 tagaacattgctctttt-nnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 227  Q
    |||||||||||| ||||           | |||||||||||||||||||| |||||||||| |||||||||||||  |||||||| |||||||||||||    
T  47984983 tagaacattgcttttttaaaaaaaaaacacgttttgattttatcactggcatcttttcattcccagagccgagccaacgaattcttagggacggccctg 47984885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 47 - 227
Target Start/End: Original strand, 28749715 - 28749895
Alignment:
Q  47 cctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 146  Q
    |||||||||||||||||| |||||||  |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  28749715 cctcatgtatacggtagt-attttcacatctgagtgtaccgcatatatacggcaccttgtatttatcttttcaaaaatataaatagaatattgctctttt 28749813  T
Q  147 -nnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 227  Q
              |||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  28749814 gaaaaaaaaatatgttttgattttatcattggtctcttttcattcccagagccgagcctccgaattttcagggacggccctg 28749895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 27 - 225
Target Start/End: Original strand, 8239670 - 8239869
Alignment:
Q  27 tttggtgttaggtgg--gggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaat 124  Q
    |||||||||| ||||  ||||||||||| ||||||||| |||||||||  | |||||||||| |||||||||||||| || ||||||| |||||||||||    
T  8239670 tttggtgttaagtggaggggttcctcatatatacggtaatcattttcacatttgggtgtaccacatatatacggcacattatatttattttttaaaaaat 8239769  T
Q  125 ataaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggcc 224  Q
    |||||||||||||| |||||||         || ||||| ||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  8239770 ataaatagaacattactcttttaaaaaaaa-tacgttttcattttatcattggcctcttttcatttccagagccgagcctccaaattcttagggacggcc 8239868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 25010418 - 25010611
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaa--t 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||          |||||| ||||||||||||||||||  |    
T  25010418 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgc----------caccttatatttatcttttaaaaaaaat 25010507  T
Q  125 ataaatagaacattgctcttttnnnnnnnnt-tatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggc 223  Q
    ||||||||| ||||||| ||||          || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25010508 ataaatagatcattgcttttttttttaaaaaatacgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattcttagggacggc 25010607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 46 - 138
Target Start/End: Original strand, 23859077 - 23859169
Alignment:
Q  46 tcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatt 138  Q
    ||||||||||||||||||| |||||||||| |||||||| ||||||||||||| || |||||||||||||||||||||| |||||||||||||    
T  23859077 tcctcatgtatacggtagtaattttcatctttgggtgtatcgcatatatacggtacattgtatttatcttttaaaaaatttaaatagaacatt 23859169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 9021898 - 9021799
Alignment:
Q  46 tcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttt 145  Q
    ||||||||||||||||||| ||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| | |||| |||||    
T  9021898 tcctcatgtatacggtagtgattttcacctttgggtgtaccgcatatatacggcacattgtatttatcttttaaaaaatttaaatagcaaattgttcttt 9021799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 33162418 - 33162257
Alignment:
Q  65 cattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnttatgttttg 164  Q
    |||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||          || |||||     
T  33162418 cattttcacctttaggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagagcattgctctttaaaaaaaaaatacgtttta 33162319  T
Q  165 attttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||| || |||||||||| | ||||| ||||  ||||||||||| ||| | ||||||    
T  33162318 attttatcattgacctcttttcactcccagaaccgaatctccgaattcttaggaatggccct 33162257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 2611363 - 2611260
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    |||||||||||||||| || || ||||||| |  || |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||    
T  2611363 ggttcctcatgtatacagttgtgattttcaccattgtgtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattgttc 2611264  T
Q  143 tttt 146  Q
    ||||    
T  2611263 tttt 2611260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 23744808 - 23744900
Alignment:
Q  54 tatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 146  Q
    ||||||||||| ||||| |||| | |||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| ||||||    
T  23744808 tatacggtagtgatttttatctttaggtgtaccgcatatatgcggcaccttgtatttatcttttaaaaaatttaattagaacattgttctttt 23744900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 7398452 - 7398555
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    ||||||||||||||| |||||| ||||||| || | |||||| | |||||||| |||||||||||||||||||| ||||||| |||||||||||||| ||    
T  7398452 ggttcctcatgtatatggtagtgattttcacctttaggtgtatcacatatatatggcaccttgtatttatctttcaaaaaatttaaatagaacattgttc 7398551  T
Q  143 tttt 146  Q
    ||||    
T  7398552 tttt 7398555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 6765771 - 6765680
Alignment:
Q  54 tatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttt 145  Q
    ||||||||||| ||||||| || ||| ||||| || |||||||| |||||||||||||||||||||||||| |||||||||||||| |||||    
T  6765771 tatacggtagtgattttcacctttggatgtacggcttatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattgttcttt 6765680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 43 - 138
Target Start/End: Original strand, 36891579 - 36891674
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatt 138  Q
    |||||||||||||||||||||| ||||||| || ||| ||||||| ||||||||  ||| ||||||| ||| ||||||||||||||||||||||||    
T  36891579 ggttcctcatgtatacggtagtgattttcacctttggatgtaccgaatatatacaacacattgtattcatcatttaaaaaatataaatagaacatt 36891674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 138
Target Start/End: Original strand, 12981327 - 12981422
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatt 138  Q
    |||||||||| ||||| ||||| ||||||| || || ||||||||| |||||| || ||||||||||||||||||||||||  |||||||||||||    
T  12981327 ggttcctcatatatacagtagtgattttcacctttgtgtgtaccgcgtatatatggaaccttgtatttatcttttaaaaaaattaaatagaacatt 12981422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 47 - 138
Target Start/End: Original strand, 20153206 - 20153297
Alignment:
Q  47 cctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatt 138  Q
    |||||||||||||| ||| |||||||||| ||||| || |||||||||||  ||| |||||||||||||||||||||| |||||| ||||||    
T  20153206 cctcatgtatacggcagtgattttcatctttgggtttatcgcatatatacaacactttgtatttatcttttaaaaaatttaaataaaacatt 20153297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 43 - 229
Target Start/End: Complemental strand, 12419596 - 12419411
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    |||||||||||||| |  |||| |||||||||| ||| |||| | || ||||| || || |||||||||||||||||||||| |||||||||||||| ||    
T  12419596 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacattgttc 12419497  T
Q  143 ttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctgat 229  Q
    ||||         || ||| | ||||||| || |||||||||||| || || ||||||||||||| ||||  ||| |||||||||||    
T  12419496 ttttaaaaaaaa-tacgttgttattttattacgggcctcttttcacttacaaagccgagcctccggattcataggaacggccctgat 12419411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 40357365 - 40357303
Alignment:
Q  159 gttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacg 221  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||    
T  40357365 gttttgattttatcactgaccttttttcatttccagagccgagcctccgaattctcaaggacg 40357303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 27237524 - 27237421
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    ||||||||||||||||| |||| ||||||| || | | |  | | |||||||||  |||||||||||||||||||||||||| |||||||||||||| ||    
T  27237524 ggttcctcatgtatacgatagtgattttcacctttagattcatcacatatatacaacaccttgtatttatcttttaaaaaatttaaatagaacattgttc 27237425  T
Q  143 tttt 146  Q
    ||||    
T  27237424 tttt 27237421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 36903022 - 36902924
Alignment:
Q  46 tcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 144  Q
    ||||||||||||| ||| | ||||||| || | |||||||  |||||||||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  36903022 tcctcatgtatacagtactgattttcacctttaggtgtacaacatatatacgacatcttgtatttatctattaaaaaatttaaatagaacattgttctt 36902924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 21763652 - 21763586
Alignment:
Q  79 ggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttt 145  Q
    |||||| ||||||||||||  || |||||||||||||||||||||| ||||||||||| || |||||    
T  21763652 ggtgtatcgcatatatacgatactttgtatttatcttttaaaaaatttaaatagaacaatgttcttt 21763586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 44 - 130
Target Start/End: Complemental strand, 23020583 - 23020498
Alignment:
Q  44 gttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaat 130  Q
    ||||||||||||||||||||| ||||||| || || ||||   ||||||||||  |||||| ||||||||||||||||||| |||||    
T  23020583 gttcctcatgtatacggtagtgattttcacctttgagtgtgt-gcatatatacaacaccttatatttatcttttaaaaaatctaaat 23020498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 40357475 - 40357413
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacg 97  Q
    ||||||||||||||||||||||        ||||||||||||||||||||| |||||||||||||||||||    
T  40357475 tttggtgttaggtgggggttcc--------acggtagtcattttcatctcttggtgtaccgcatatatacg 40357413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 18201174 - 18201234
Alignment:
Q  79 ggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattg 139  Q
    |||||||| |||||||| |||| ||||||||||| ||||||||||| |||||||| |||||    
T  18201174 ggtgtaccacatatatatggcatcttgtatttatattttaaaaaatttaaatagatcattg 18201234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 10955605 - 10955671
Alignment:
Q  161 tttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 227  Q
    |||||||| ||||||| ||||| |||||| || |||| ||||||||||||||||| |||| ||||||    
T  10955605 tttgatttaatcactgacctctattcattccccgagctgagcctccgaattctcatggacagccctg 10955671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 38971255 - 38971333
Alignment:
Q  44 gttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaa 122  Q
    ||||||| ||| ||||||||| |||||||  | | ||||||   |||||||||| ||||||||||||||||||||||||    
T  38971255 gttcctcgtgtttacggtagtgattttcacatttaggtgtataacatatatacgacaccttgtatttatcttttaaaaa 38971333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 9014233 - 9014177
Alignment:
Q  89 atatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttt 145  Q
    ||||||||  ||| |||||||||||||||||||||| |||||| ||||||| |||||    
T  9014233 atatatacaacacattgtatttatcttttaaaaaatttaaataaaacattgttcttt 9014177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 44655737 - 44655937
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44655737 tttggtgttaggtgggggttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatat 44655836  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||||||||        ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44655837 aaatagaacattgctctttt-aaaaaaattatgttttgattttatcactggtctcttttcatttccagagccgagcctccgaattctcagggacggccct 44655935  T
Q  227 ga 228  Q
    ||    
T  44655936 ga 44655937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 14146296 - 14146495
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14146296 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 14146395  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||| ||||||||         || ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  14146396 aaatagaacatcgctcttttaaaaaaaa-tacgttttgattttatcactggcctcttttcattccaagagccgagcctccgaattctcagggacggccct 14146494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 23185423 - 23185623
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23185423 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctatgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 23185522  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||||||||         || ||||||||||||||||||||||||||||| | |  |||||||||||||||||||||||| ||||||||    
T  23185523 aaatagaacattgctcttttaaaaaaaa-tacgttttgattttatcactggcctcttttcaatcctcgagccgagcctccgaattctcaggaacggccct 23185621  T
Q  227 ga 228  Q
    ||    
T  23185622 ga 23185623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 5027545 - 5027746
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||| |||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5027545 tttggtgttaggtgggggttcctcatctatatggtagtcattttcacctatgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 5027644  T
Q  127 aaatagaacattgctctttt-nnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccc 225  Q
    ||||||||||||||||||||          || ||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||    
T  5027645 aaatagaacattgctcttttaaaaaaaaaatacgttttgattttatcactggcctcttttcattccccgagtcgagcctccgaattctcagggacggccc 5027744  T
Q  226 tg 227  Q
    ||    
T  5027745 tg 5027746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 5316676 - 5316875
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5316676 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 5316775  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||||||||         || |||||||||||||||||| |||||||||||| | |  | ||||||||| |||||||||||||||||||    
T  5316776 aaatagaacattgctcttttaaaaaaaa-tacgttttgattttatcactgacctcttttcattcctaaggtcgagcctccaaattctcagggacggccct 5316874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 6771787 - 6771989
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6771787 tttggtgttaggtggaggttcctcgtgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 6771886  T
Q  127 aaatagaacattgctcttt--tnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggcc 224  Q
    ||||||||||| |||||||             | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6771887 aaatagaacatcgctctttaaaaaaaaaaaacacgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattctcagggacggcc 6771986  T
Q  225 ctg 227  Q
    |||    
T  6771987 ctg 6771989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 27 - 224
Target Start/End: Original strand, 50881426 - 50881621
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||||||||||||| ||||||||||||||||||||||||||||    
T  50881426 tttggtgttaggtggaggttcctcatgtatactgtagtcattttcacctctagatgtaccgcatatatacgacaccttgtatttatcttttaaaaaatat 50881525  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggcc 224  Q
    ||||||||||||||||||||         ||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50881526 aaatagaacattgctcttttaaaaaaa--tagattttaattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggcc 50881621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 4971735 - 4971534
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4971735 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacttatgggtgtaccgcatatatacggtaccttgtatttatcttttaaaaaatat 4971636  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    |||||||||||||||| |||         |||||||||||||||||||||| ||||||||||| || || ||||||||| |||||||||||||| |||||    
T  4971635 aaatagaacattgctc-tttaaaaaaaaatatgttttgattttatcactggtctcttttcattccccgaaccgagcctcagaattctcagggacagccct 4971537  T
Q  227 gat 229  Q
    |||    
T  4971536 gat 4971534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 17168952 - 17169152
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||||||  |||||| |||||||||||||||||||||    
T  17168952 tttggtgttaggtaggggttcctcatgtatatggtagtcattttcacctttgggtgtaccgcatatatacaacaccttatatttatcttttaaaaaatat 17169051  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||| ||||         || |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17169052 aaatagaacattgct-ttttttaaaaaaatacgttttgattttatcactgacctcttttcatttccagagccgagcctccgaattcttagggacggccct 17169150  T
Q  227 ga 228  Q
    ||    
T  17169151 ga 17169152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 27906834 - 27906646
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||             |||||||||||||||||||||||||||||||    
T  27906834 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgg------------cggcaccttgtatttatcttttaaaaaatat 27906747  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    |||| |||||||||||||||        |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27906746 aaatggaacattgctcttttaaaaaaaattatgttttgattttatcactggcctcttttcattttcagagccgagcctccgaattctcagggacggccct 27906647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 31 - 221
Target Start/End: Original strand, 16140055 - 16140244
Alignment:
Q  31 gtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaat 130  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  16140055 gtgttaggtggggattcctcatgtatacggtagtcattttcacctctaggtgtaccgcatatatacaacaccttgtatttatcttttaaaaaatataaat 16140154  T
Q  131 agaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacg 221  Q
    |||||||  |||||||         || |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  16140155 agaacatcactcttttaaaaaaaa-tacgttttgattttatcaccggcctcttttcattcccagagccgagcctccgaattctcagggacg 16140244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 1366995 - 1366797
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1366995 tttggtgttaggtgggggttcctcgtgtatacggtagtcattttcatctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatat 1366896  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||||  ||         |||||||| | ||||||||||||||||||||||| ||||||| |||||||| |||||  || |||||||||    
T  1366895 aaatagaacattgctc--ttaaaaaaaaatatgttttcaatttatcactggcctcttttcattcccagagctgagcctccaaattcgtagagacggccct 1366798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 3406414 - 3406614
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||||||||||||||    
T  3406414 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctccgagtgtactgcatatatacggcaccttgtatttatcttttaaaaaatat 3406513  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||| ||||||||          | ||||| |||||||||||| |||||||||||| || |||| |||||||| ||||||||||||| |||||    
T  3406514 aaatagaacatcgctcttttaaaaaaaaaaacgttttcattttatcactgacctcttttcattccccgagctgagcctccaaattctcagggacagccct 3406613  T
Q  227 g 227  Q
    |    
T  3406614 g 3406614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 3440406 - 3440206
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||||||||||||||    
T  3440406 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctccgagtgtactgcatatatacggcaccttgtatttatcttttaaaaaatat 3440307  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||| ||||||||          | ||||| |||||||||||| |||||||||||| || |||| |||||||| ||||||||||||| |||||    
T  3440306 aaatagaacatcgctcttttaaaaaaaaaaacgttttcattttatcactgacctcttttcattccccgagctgagcctccaaattctcagggacagccct 3440207  T
Q  227 g 227  Q
    |    
T  3440206 g 3440206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 9173140 - 9172940
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  9173140 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaaatat 9173041  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||| | |||          ||  |||| | |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  9173040 aaatagaacattgttttttaaaacaaaaatacatttttaatttatcaccggcctcttttcattcccagagccgagcctccgaattcttagggacggccct 9172941  T
Q  227 g 227  Q
    |    
T  9172940 g 9172940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 9181122 - 9180922
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  9181122 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaaatat 9181023  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||| | |||          ||  |||| | |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  9181022 aaatagaacattgttttttaaaacaaaaatacatttttaatttatcaccggcctcttttcattcccagagccgagcctccgaattcttagggacggccct 9180923  T
Q  227 g 227  Q
    |    
T  9180922 g 9180922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 19955713 - 19955912
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  19955713 tttggtgttaggtgggggttcctcatatatacggtagtcattttcacctttgggtgtaccgcatatatacggtaccttatatttatcttttaaaaaatat 19955812  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||| ||||||| ||||         |  |||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||| |||||    
T  19955813 aaatagatcattgct-ttttaaaaaaaaattcgttttgattttatcactggcctcttttcattctcagagccgagcctccgaattcttagggacagccct 19955911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 27 - 231
Target Start/End: Complemental strand, 40501907 - 40501703
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||| ||||| |||||||||||||||||||||| | || ||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  40501907 tttggtgttaggtggaggttcttcatgtatacggtagtcatttttacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatat 40501808  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||| |||| || ||||         || |||||||||||||||||| ||||||||||||  ||||| |||||||||||||||| ||||||||||||    
T  40501807 aaatagatcattactttttttttaaaaaatacgttttgattttatcactgacctcttttcattctcagagtcgagcctccgaattcttagggacggccct 40501708  T
Q  227 gataa 231  Q
    |||||    
T  40501707 gataa 40501703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 27 - 210
Target Start/End: Complemental strand, 41697254 - 41697072
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||| |||||||||||  || ||||||||||||||||||||||||    
T  41697254 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacttctggatgtactgcatatatacgatactttgtatttatcttttaaaaaatat 41697155  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaat 210  Q
    ||||||||||| ||||||||         || |||||||||||||||||| |||||||||||| |||||||||||| |||||||    
T  41697154 aaatagaacatcgctcttttaaaaaaaa-tacgttttgattttatcactgacctcttttcattcccagagccgagcttccgaat 41697072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 52 - 227
Target Start/End: Complemental strand, 21741029 - 21740852
Alignment:
Q  52 tgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctttt--nnn 149  Q
    |||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||         
T  21741029 tgtatatggtagtcattttcacctctgggtgtatcgcatatatacggcaccttgtatttatcttttaaaaaatacaaatagaacattgctcttttaaaaa 21740930  T
Q  150 nnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 227  Q
          ||  ||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||    
T  21740929 aaaaaatacattttgattttatcactggcctcttttcattctcagagccgagcctccgaattctcaaggacggccctg 21740852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 29 - 146
Target Start/End: Original strand, 27559635 - 27559752
Alignment:
Q  29 tggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataa 128  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  27559635 tggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataa 27559734  T
Q  129 atagaacattgctctttt 146  Q
    ||||||||||||| ||||    
T  27559735 atagaacattgctttttt 27559752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 51607557 - 51607358
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacgg-caccttgtatttatcttttaaaaaata 125  Q
    |||||| |||| |||| |||||||||||||||||||||||||||||  | |||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  51607557 tttggtattagatgggagttcctcatgtatacggtagtcattttcacgtttgggtgtaccgcatatatacggccaccttatatttatcttttaaaaaata 51607458  T
Q  126 taaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccc 225  Q
    |||||| ||||||  | ||||         || |||||||||||||||||| |||||||||||| ||||||||||||||||||||| | |||||||| ||    
T  51607457 taaataaaacatt--ttttttttaaaaaaatacgttttgattttatcactgacctcttttcattcccagagccgagcctccgaatttttagggacggtcc 51607360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 13913599 - 13913396
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatata--cggcaccttgtatttatcttttaaaaaat 124  Q
    |||||||||||||||||||| |||||||||||||||||||||||||  | | |||||||||||||||||  ||||| ||| |||||||||||||||||||    
T  13913599 tttggtgttaggtgggggtttctcatgtatacggtagtcattttcacttttaggtgtaccgcatatatacccggcaacttatatttatcttttaaaaaat 13913500  T
Q  125 ataaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggcc 224  Q
    ||||||||| ||||||| ||||         ||  ||||||||||||||||||| ||||||||||  ||||||| |||||||||||||| ||||||||||    
T  13913499 ataaatagatcattgct-tttttaaaaaaaatacattttgattttatcactggcatcttttcattctcagagccaagcctccgaattcttagggacggcc 13913401  T
Q  225 ctgat 229  Q
     ||||    
T  13913400 ttgat 13913396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 54 - 227
Target Start/End: Original strand, 6889634 - 6889805
Alignment:
Q  54 tatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnn 153  Q
    ||||||| | ||||||||| |||||| |||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||           
T  6889634 tatacggcaatcattttcacctctggatgtaccgcatatatacgatactttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaa 6889733  T
Q  154 nttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 227  Q
      || |||||||||||||||||| ||||||||||||  |||| ||||||||||||||| ||| |||||||||||    
T  6889734 --tacgttttgattttatcactgacctcttttcattctcagaaccgagcctccgaattttcaaggacggccctg 6889805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 54 - 227
Target Start/End: Original strand, 6891480 - 6891651
Alignment:
Q  54 tatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnn 153  Q
    ||||||| | ||||||||| |||||| |||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||           
T  6891480 tatacggcaatcattttcacctctggatgtaccgcatatatacgatactttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaa 6891579  T
Q  154 nttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 227  Q
      || |||||||||||||||||| ||||||||||||  |||| ||||||||||||||| ||| |||||||||||    
T  6891580 --tacgttttgattttatcactgacctcttttcattctcagaaccgagcctccgaattttcaaggacggccctg 6891651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 66 - 227
Target Start/End: Complemental strand, 22865538 - 22865378
Alignment:
Q  66 attttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnttatgttttga 165  Q
    ||||||| || ||||||||||| |||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||         || |||||||    
T  22865538 attttcacctttgggtgtaccg-atatatagagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttgaaaaaaaatacgttttga 22865440  T
Q  166 ttttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 227  Q
    |||||||| || |||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  22865439 ttttatcattgacctcttttcattcccagagccgtgcctccgaattctcagggacggccctg 22865378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 43 - 145
Target Start/End: Complemental strand, 38547137 - 38547035
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    ||||||||||||||| | |||| |||||||  | |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  38547137 ggttcctcatgtatatgatagtgattttcacatttgggtgtaccacatatatacggcaccttgtatttatcttttaaaaaatttaaatagaacattgatc 38547038  T
Q  143 ttt 145  Q
    |||    
T  38547037 ttt 38547035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 27 - 232
Target Start/End: Original strand, 44895648 - 44895848
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||      |  || |||||| |||||||||||||||||||||    
T  44895648 tttggtgttaggtgggggttcctcatgtatacggtaatcattttcacctttgggtgtacc------acccgccaccttatatttatcttttaaaaaatat 44895741  T
Q  127 aaatagaacattgctctttt-nnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccc 225  Q
    ||||||| ||||| | ||||          |||||||||||||| |||| | |||||||||||| ||||| |||| |||||||||| | || |||  |||    
T  44895742 aaatagatcattgtttttttaaaaaaaaaatatgttttgattttttcaccgacctcttttcattcccagaaccgaacctccgaatttttagagacaaccc 44895841  T
Q  226 tgataat 232  Q
    |||||||    
T  44895842 tgataat 44895848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 39134824 - 39134720
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatc-ttttaaaaaatataaatagaacattgct 141  Q
    |||||||||||||||| ||||| ||| ||| || ||||||||  |||||||||| |||||||||||||||| ||||||||||| |||||||||||||| |    
T  39134824 ggttcctcatgtatacagtagtgattatcacctttgggtgtattgcatatatacagcaccttgtatttatctttttaaaaaatttaaatagaacattgtt 39134725  T
Q  142 ctttt 146  Q
    |||||    
T  39134724 ctttt 39134720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 45758506 - 45758609
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    |||||||||||||||||||||| ||||||| || ||| ||||   |||||||||  ||||||| |||||||||||||||||| |||||||||||||| ||    
T  45758506 ggttcctcatgtatacggtagtgattttcacctttggatgtataacatatatacaacaccttgcatttatcttttaaaaaatttaaatagaacattgttc 45758605  T
Q  143 tttt 146  Q
    ||||    
T  45758606 tttt 45758609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 45 - 146
Target Start/End: Original strand, 5533326 - 5533428
Alignment:
Q  45 ttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatctttt-aaaaaatataaatagaacattgctct 143  Q
    |||||||||||||||||||| ||||||| || ||  |||||  ||||||||||||||||||| |||||||||| ||||||| ||||||||| |||| |||    
T  5533326 ttcctcatgtatacggtagtgattttcacctttgattgtacatcatatatacggcaccttgtgtttatcttttaaaaaaatttaaatagaatattgttct 5533425  T
Q  144 ttt 146  Q
    |||    
T  5533426 ttt 5533428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 34247154 - 34247216
Alignment:
Q  159 gttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacg 221  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||    
T  34247154 gttttgattttatcactgaccttttttcatttccagagccgagcctccgaattctcaaggacg 34247216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 38853539 - 38853637
Alignment:
Q  48 ctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 146  Q
    ||||||||||||||||| ||||||| || ||| | |||  |||||||||| ||||||||||||||| |||||||||| ||||||||||| || ||||||    
T  38853539 ctcatgtatacggtagtgattttcacctttggatatacaacatatatacgacaccttgtatttatcatttaaaaaatttaaatagaacactgttctttt 38853637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 43235871 - 43235774
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttt--taaaaaatataaatagaacatt 138  Q
    ||||||||||||||||| |||| ||||||| || |||||||||  |||||||||| || |||||||||||||||   ||||||| |||||||||||||    
T  43235871 ggttcctcatgtatacgatagtgattttcacctttgggtgtacatcatatatacgacatcttgtatttatctttaaaaaaaaatttaaatagaacatt 43235774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 146
Target Start/End: Complemental strand, 10926052 - 10925951
Alignment:
Q  46 tcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaa-atataaatagaacattgctctt 144  Q
    ||||||||||||||||||| |||||||||| ||| || | | |||||||||||||| |||||||||| ||||||||| |  ||||||||| |||| ||||    
T  10926052 tcctcatgtatacggtagtgattttcatctttggatgcatctcatatatacggcacattgtatttattttttaaaaatacttaaatagaatattgttctt 10925953  T
Q  145 tt 146  Q
    ||    
T  10925952 tt 10925951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 43 - 212
Target Start/End: Original strand, 50146308 - 50146476
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    ||||||||||||||| |||| | ||||| | || ||||| || | |||||| ||||||||||| |||||||||| ||||| | |||||||||||||| ||    
T  50146308 ggttcctcatgtatagggtaatgatttttacctttgggtctatcacatatacacggcaccttgcatttatctttcaaaaagtttaaatagaacattgttc 50146407  T
Q  143 ttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattc 212  Q
    ||||          || |||| |||||||||  || ||| |||||||| |||||||||||||||||||||    
T  50146408 ttttaaaaaagtacat-tttttattttatcatgggtctcgtttcatttacagagccgagcctccgaattc 50146476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 145
Target Start/End: Original strand, 26803960 - 26804059
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    |||| ||||||||||||||||| ||||||| ||    ||||| |||||||||||| || ||||||||||||||||||||||| |||||| | ||||| ||    
T  26803960 ggtttctcatgtatacggtagtgattttcacctt---gtgtatcgcatatatacgacatcttgtatttatcttttaaaaaatttaaatatagcattgttc 26804056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 139
Target Start/End: Original strand, 33170771 - 33170867
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattg 139  Q
    |||| ||||||||||||||||| ||||||| |  | ||||||||||||||||||  ||| |||||||||  ||||||||||| |||||| |||||||    
T  33170771 ggtttctcatgtatacggtagtgattttcaccatttggtgtaccgcatatatacaacacattgtatttacgttttaaaaaatttaaatataacattg 33170867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 17322684 - 17322621
Alignment:
Q  83 taccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 146  Q
    |||||||||||||||  || |||||||||||||| |||||||||||||||||||||| ||||||    
T  17322684 taccgcatatatacgctacattgtatttatctttaaaaaaatataaatagaacattgttctttt 17322621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 43 - 145
Target Start/End: Original strand, 6221690 - 6221791
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    |||||||||| |||||| || | |||||||  | | | |||||||| |||||||||||| ||||||||||||||| |||||| |||||||||||||| ||    
T  6221690 ggttcctcatatatacgataatgattttcacattttgatgtaccgcttatatacggcacattgtatttatctttt-aaaaatttaaatagaacattgttc 6221788  T
Q  143 ttt 145  Q
    |||    
T  6221789 ttt 6221791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 35392295 - 35392376
Alignment:
Q  56 tacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatt 138  Q
    ||||||||| ||||||| || ||| | |||||||||||||||||||||||||||||||  ||||||||| |||||| ||||||    
T  35392295 tacggtagtgattttcacctttggatataccgcatatatacggcaccttgtatttatc-cttaaaaaatttaaataaaacatt 35392376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 34247044 - 34247106
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacg 97  Q
    ||||||||||||||||||||||        ||||||||||||||||||||| |||||||||||||||||||    
T  34247044 tttggtgttaggtgggggttcc--------acggtagtcattttcatctcttggtgtaccgcatatatacg 34247106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 52127519 - 52127460
Alignment:
Q  168 ttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 227  Q
    ||||||| |||||| ||| | | |||||||||||||||||||||||||||||||| ||||    
T  52127519 ttatcaccggcctccttttaatcccagagccgagcctccgaattctcagggacggtcctg 52127460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 1328 - 1527
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1328 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcagcttgtatttatcttttaaaaaatat 1427  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    |||||||||| |||||||||         || |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1428 aaatagaacagtgctcttttaaaaaaaa-tacgttttgattttatcactgacctcttttcattcccagagccgagcctccgaattctcagggacggccct 1526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 57)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 27 - 215
Target Start/End: Complemental strand, 38209708 - 38209520
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38209708 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 38209609  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctca 215  Q
    |||||||||||||||||||         |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38209608 aaatagaacattgctctttaaaaaaaaattatattttgattttatcactggcctcttttcatttccagagccgagcctccaaattctca 38209520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 47128977 - 47129177
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47128977 tttggtgttaggtgggggttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 47129076  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||| ||||||         ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  47129077 aaatagaacattgttcttttaaaaaaaa-tacattttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggctct 47129175  T
Q  227 ga 228  Q
    ||    
T  47129176 ga 47129177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 31 - 227
Target Start/End: Original strand, 54780771 - 54780968
Alignment:
Q  31 gtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaat 130  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54780771 gtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaat 54780870  T
Q  131 agaacattgctctttt-nnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 227  Q
    ||||||||||||||||          || ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  54780871 agaacattgctcttttaaaaaaaaaatacgttttgattttatcactggcctcttttcattcccagagccaagcctccgaattctcagggacggccctg 54780968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 34768691 - 34768492
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34768691 tttggtgttaggtgggggttcctcatgtatacggtaatcattttcacctctgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatat 34768592  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||||||||         |||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||| ||||    
T  34768591 aaatagaacattgctcttttaaaaaaaa-tatgttttgattttatcactagcctcttttcattcccaaagccgagcctccgaattctcagggacgaccct 34768493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 32915375 - 32915575
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32915375 tttggtgttaggtgggggttcctcatgtatacggtaatcatttttacctctgggtgtaccacatatatacggcaccttgtatttatcttttaaaaaatat 32915474  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||| ||||||||            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32915475 aaatagaacatcgctcttttaaaaaaaaaaccgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattctcagggacggccct 32915574  T
Q  227 g 227  Q
    |    
T  32915575 g 32915575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 34027569 - 34027768
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  34027569 tttggtgttaggtgggggttcctcatgtataccgtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatat 34027668  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||| ||||         || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  34027669 aaatagaacattgct-ttttttaaaaaaatacgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattcttagggacggccct 34027767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 32128574 - 32128774
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||| || |||||||||||||||||||||| || ||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  32128574 tttggtgttaggtgggggtttcttatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatat 32128673  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||||||||         || |||||||||||||||||| ||| |||||||| |||||||||||||||| |||||| ||||||||||||    
T  32128674 aaatagaacattgctcttttaaaaaaaaatacgttttgattttatcactgaccttttttcattcccagagccgagcctccaaattcttagggacggccct 32128773  T
Q  227 g 227  Q
    |    
T  32128774 g 32128774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 30 - 213
Target Start/End: Complemental strand, 43455645 - 43455463
Alignment:
Q  30 ggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43455645 ggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaa 43455546  T
Q  130 tagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattct 213  Q
    |||||||||||||||||         || |||||||||||||||||| |||||||||||| |||||| ||||||||||||||||    
T  43455545 tagaacattgctcttttaaaaataa-tacgttttgattttatcactgacctcttttcattcccagagtcgagcctccgaattct 43455463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 34 - 227
Target Start/End: Complemental strand, 2790851 - 2790659
Alignment:
Q  34 ttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaataga 133  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  2790851 ttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggtaccttatatttatcttttaaaaaatataaataga 2790752  T
Q  134 acattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 227  Q
    |||||| ||||||          ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||    
T  2790751 acattgttcttttaaaaaaaa-aatgttttgattttatcactggtctcttttcattcccagagccgagcctccgaattcttagagacggccctg 2790659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 27 - 228
Target Start/End: Complemental strand, 37777340 - 37777139
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||| || ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37777340 tttggtgttagttgagggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatat 37777241  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    |||||||||||| || ||||         || |||||||||||||||||| |||||||||||| ||||||||||||||||||||| | |||||| |||||    
T  37777240 aaatagaacattactttttttttaaaaaatacgttttgattttatcactgacctcttttcattcccagagccgagcctccgaatttttagggacagccct 37777141  T
Q  227 ga 228  Q
    ||    
T  37777140 ga 37777139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 10978890 - 10979092
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10978890 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacttctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatat 10978989  T
Q  127 aaatagaacattgctctttt--nnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggcc 224  Q
    ||||||||||||||||||||           || |||||||||||||||||  |||||||||||| |||||||  | ||||||||||||||| |||||||    
T  10978990 aaatagaacattgctcttttaaaaaaaaaaatacgttttgattttatcactaacctcttttcattcccagagctaaacctccgaattctcagagacggcc 10979089  T
Q  225 ctg 227  Q
    |||    
T  10979090 ctg 10979092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 55255259 - 55255447
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||             |||||||||||||||||||||||||||||||    
T  55255259 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgg------------cggcaccttgtatttatcttttaaaaaatat 55255346  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    |||| |||||||||||||||        |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  55255347 aaatggaacattgctcttttaaaaaaaattatgttttgattttatcactggcctcttttcattttcagagccgagcctccgaattctcagggacggccct 55255446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 48209230 - 48209436
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48209230 tttggtgttaggtgggggtttctcatgtatacggtagtcatattcacatctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 48209329  T
Q  127 aaatagaacattgctctttt-nnnnnnnnttatgttttgat-----tttatcactggcctcttttcatttccagagccgagcctccgaattctcagggac 220  Q
    ||||||||||||||||||||          || ||||||||     ||||||||||| ||||||||| | ||||||||||||||||||||||||||||||    
T  48209330 aaatagaacattgctcttttaaaaaaaaaatacgttttgattttaatttatcactggtctcttttcactcccagagccgagcctccgaattctcagggac 48209429  T
Q  221 ggccctg 227  Q
    |||||||    
T  48209430 ggccctg 48209436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 5128959 - 5128758
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  5128959 tttggtgttaggtggaggttcctcatgtatacggtagtcattttcacctctgggtgcactgcatatatacggcaccttgtatttatcttttaaaaaatat 5128860  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgtttt-gattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccc 225  Q
    |||||||| || |||||| |          | ||||| |||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||    
T  5128859 aaatagaatatcgctcttctaaaaaaaaaaacgttttagattttatcactggcctcttttcattcccagagccgagcctctaaattctcagggacggccc 5128760  T
Q  226 tg 227  Q
    ||    
T  5128759 tg 5128758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 54083359 - 54083160
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  54083359 tttggtgttaggtaggggttcctcatgtatacggtagtcatttttatctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatat 54083260  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||| ||||| | ||||         || |||||||||||||||||| ||||||||||||  |||||||||||||||||||| | ||||||||||||    
T  54083259 aaatagatcattg-ttttttttaaaaaaatacgttttgattttatcactgacctcttttcattctcagagccgagcctccgaatttttagggacggccct 54083161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 1105522 - 1105722
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||| |||||||||| |||||||||||||| |||| |||||||||||||||||||  |||||||||||||||||||||||||||    
T  1105522 tttggtgttaggtgggggttgctcatgtatatggtagtcattttcacctctaggtgtaccgcatatatacgataccttgtatttatcttttaaaaaatat 1105621  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    |||||||||||  |||||||         || |||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||| ||||||| ||    
T  1105622 aaatagaacatcactcttttaaaaaaaa-tacgttttgattttatcactgacctcttttcattcccagagccgagcctctgaattctcaaggacggctct 1105720  T
Q  227 ga 228  Q
    ||    
T  1105721 ga 1105722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 16845011 - 16845210
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatctttt-aaaaaata 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||  |||||||||| |||||| |||||||||||| ||||||||    
T  16845011 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcaccgttgggtgtactacatatatacgacaccttatatttatcttttaaaaaaata 16845110  T
Q  126 taaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccc 225  Q
    |||||||||||||||||||||         || ||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||    
T  16845111 taaatagaacattgctcttttaaaaaaaa-tacgttttgattttatcactgg-cttttttcatttccagagccgagcctccgaattcttagggacggccc 16845208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 19498494 - 19498692
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| || ||| ||||||||||||  |||||||||| |||||||||||||||||||||    
T  19498494 tttggtgttaggtgggggttcctcatgtatacagtagtcattttcacctttggctgtaccgcatat--acggcaccttatatttatcttttaaaaaatat 19498591  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||||||||||         || ||||||||||||||| |||||| |||||||| | ||||||||||||||||||||| || |||||||||    
T  19498592 aaatagaacattgctcttttaaacaaaa-tacgttttgattttatcattggcctgttttcattcctagagccgagcctccgaattcttagtgacggccct 19498690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 37514649 - 37514848
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37514649 tttggtgttaggtggggattcttcatgtatacggtagtcattttcacctctgagtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 37514748  T
Q  127 aaatagaacattgctcttt-tnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccc 225  Q
    ||||||||||| |||||||           || ||||||||||||||||||||||||||||||| ||   || |||||||| ||||||||||||||||||    
T  37514749 aaatagaacatcgctctttaaaaaaaaaaatacgttttgattttatcactggcctcttttcattccc--cgctgagcctccaaattctcagggacggccc 37514846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 10428322 - 10428116
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcat--------ctctgggtgtaccgcatatatacggcaccttgtatttatctttta 118  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||    
T  10428322 tttggtgttaggtggaggttcctcatgtatacggtagtcattttcacaatttcacctctgggtgtaccgcatatatacggcaccttgtatttatctttta 10428223  T
Q  119 aaaaatataaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcaggg 218  Q
    |||||||||||||||||||||  |||||         ||  ||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||  ||    
T  10428222 aaaaatataaatagaacattg--ctttttaaaaaaaataaattttgattttagcactgacctcttttcattcccagagccgagcctccgaattctcgagg 10428125  T
Q  219 acggccctg 227  Q
    |||||||||    
T  10428124 acggccctg 10428116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 69 - 227
Target Start/End: Original strand, 17679432 - 17679589
Alignment:
Q  69 ttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnttatgttttgattt 168  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||         || ||||||||||    
T  17679432 ttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaatattgctcttttaaaaaaaa-tacgttttgattt 17679530  T
Q  169 tatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 227  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||    
T  17679531 tatcactggtctcttttcattcccagaaccgagcctccgaattctcagagacggccctg 17679589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 35779442 - 35779243
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||| |||||||||  |||||||||||||||||||| ||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35779442 tttgatgttaggtgaaggttcctcatgtatacggtaatcattttcacctttgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatat 35779343  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
     ||||||||||||||||||          || ||||||||||||||||| ||||||||||||| |  ||| ||| |||||||||||||| |||||||| |    
T  35779342 -aatagaacattgctcttt--aaaaaaaatacgttttgattttatcactagcctcttttcattcctcgagtcgaacctccgaattctcaaggacggcctt 35779246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 35465097 - 35465284
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||  | | |||||||||||||||||| ||||||| |||||||||| ||||||||||    
T  35465097 tttggtgttaggtggggattcctcatgtatacggtagttattttcacttttaggtgtaccgcatatatac-gcaccttttatttatcttgtaaaaaatat 35465195  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcag 216  Q
    ||||| ||||||| ||||||         ||||||||||||||||||||| |||||||||||| |||||  |||||||||||||||||||    
T  35465196 aaatataacattgttcttttaaaaaaaa-tatgttttgattttatcactgacctcttttcattcccagaatcgagcctccgaattctcag 35465284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 40089506 - 40089714
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaa------ 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| |||||||||||||||          
T  40089506 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaatata 40089605  T
Q  121 ---aaatataaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagg 217  Q
       ||||||||||| ||||||||| ||||         || |||||||||||||||||| | |||||||||| | ||||||||||||||||||||| |||    
T  40089606 aataaatataaataaaacattgct-tttttaaaaaaaatacgttttgattttatcactgacttcttttcattccaagagccgagcctccgaattcttagg 40089704  T
Q  218 gacggccctg 227  Q
    |||| |||||    
T  40089705 gacgaccctg 40089714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 16882512 - 16882313
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||| ||||||| |||  |||||||||||||||||| || | ||||||||| ||||| |||||||||| ||||||||||||||||| |||    
T  16882512 tttggtgttaggtgagggttccccatacatacggtagtcattttcaccttttggtgtaccgtatatacacggcaccttatatttatcttttaaaaagtat 16882413  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||| | ||||         || |||||||||||||||||| | |||||||||| | ||||||||||||||||||||| ||||||||||||    
T  16882412 aaatagaacattg-ttttttttaaaaaaatacgttttgattttatcactgacttcttttcattcctagagccgagcctccgaattcttagggacggccct 16882314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 27 - 136
Target Start/End: Original strand, 13460197 - 13460306
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||  ||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  13460197 tttggtgttaggtgggggttccttatgtatacggtagtcattttcacatctgggtataccgcatatatacgacaccttgtatttatcttttaaaaaatat 13460296  T
Q  127 aaatagaaca 136  Q
    ||||||||||    
T  13460297 aaatagaaca 13460306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 221
Target Start/End: Complemental strand, 38352372 - 38352189
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||          |||||| |||||||||||||||||||||    
T  38352372 tttggtgttaggtgggggttcctcatgtacacggtagtcattttcacctttgggtgtaccgc----------caccttatatttatcttttaaaaaatat 38352283  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacg 221  Q
    ||||||| |||| || ||||         || ||||||||||||||||||  ||||||||||| ||||||||||||||||||||||| |||||||    
T  38352282 aaatagatcattact-ttttaaaaaaaaatacgttttgattttatcactgatctcttttcattcccagagccgagcctccgaattcttagggacg 38352189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 65 - 224
Target Start/End: Original strand, 51964736 - 51964897
Alignment:
Q  65 cattttcatctctgggtgtaccgcatatatacggcaccttgtatttatctttt---aaaaaatataaatagaacattgctcttttnnnnnnnnttatgtt 161  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||         || |||    
T  51964736 cattttcacctctgggtgtatcgcatatatacggcaccttgtatttatctttttaaaaaaaatataaatagaacattgctcttttaaaaaaaa-tacgtt 51964834  T
Q  162 ttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggcc 224  Q
    ||||||||||||  |||||||||||||| ||||||||||| ||||||||| ||| ||| ||||    
T  51964835 ttgattttatcatcggcctcttttcattcccagagccgagtctccgaattttcaaggatggcc 51964897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 74 - 232
Target Start/End: Complemental strand, 9578735 - 9578570
Alignment:
Q  74 ctctgggtgtaccgcatatatacggc-accttgtatttatcttttaaaaaatataaatagaacattgctctttt-nnnnnnnnttatgttttgat----- 166  Q
    |||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||          || ||||||||         
T  9578735 ctctggatgtaccgcatatatatggctaccttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaagaaatacgttttgattttaa 9578636  T
Q  167 tttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctgataat 232  Q
    ||||||||| ||||||||||| | |||||| |||||||||||||||||| ||||||||||||||||    
T  9578635 tttatcacttgcctcttttcactcccagagtcgagcctccgaattctcaaggacggccctgataat 9578570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 64 - 227
Target Start/End: Complemental strand, 16922409 - 16922245
Alignment:
Q  64 tcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctttt-nnnnnnnnttatgttt 162  Q
    ||||||||| || ||||  ||| ||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||           | ||||    
T  16922409 tcattttcacctttggggatactgcatatatacgacactttatatttatcttttaaaaaatataaatagaacattgctcttttaaaaataaaaaacgttt 16922310  T
Q  163 tgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 227  Q
    ||||||||||||||| ||||||||||| ||| || ||||||||| ||||||||||||||||||||    
T  16922309 tgattttatcactggtctcttttcattcccaaagtcgagcctccaaattctcagggacggccctg 16922245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 43 - 228
Target Start/End: Complemental strand, 36118559 - 36118376
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    |||| ||||||||||||||||| |||||||| | |||||||| | |||||||||| |||||||||||||||||||||||||| |||||||||||||| ||    
T  36118559 ggttactcatgtatacggtagtgattttcatatttgggtgtatcacatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattgttc 36118460  T
Q  143 ttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctga 228  Q
     |||         || ||||| ||||||| ||  ||||||||||| || || |||||||| |||||||||  ||| ||||||||||    
T  36118459 atttaaaaaaa--tacgtttttattttattacgagcctcttttcacttacaaagccgagcttccgaattcgtaggaacggccctga 36118376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 43 - 212
Target Start/End: Original strand, 52468292 - 52468459
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    ||||||||||| |||||||||| ||||||| || ||| ||||   ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  52468292 ggttcctcatgcatacggtagtgattttcacctttggatgtataacatatatacggcaccttgtatttatcttttaaaaaatttaaatagaacattgttc 52468391  T
Q  143 ttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattc 212  Q
    ||||         || ||||| ||||||| || | ||||||||||  | |||||||||||||||||||||    
T  52468392 ttttaaaaaaa--tacgtttttattttattacagacctcttttcacctacagagccgagcctccgaattc 52468459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 27 - 146
Target Start/End: Original strand, 24969427 - 24969536
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||          |||||| |||||||||||||||||||||    
T  24969427 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgc----------caccttatatttatcttttaaaaaatat 24969516  T
Q  127 aaatagaacattgctctttt 146  Q
    ||||||| ||||||| ||||    
T  24969517 aaatagatcattgctttttt 24969536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 91 - 229
Target Start/End: Complemental strand, 23508564 - 23508425
Alignment:
Q  91 atatacggcaccttgtatttatcttttaaaaaat-ataaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatt 189  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||          ||  ||||||||||||||||||||||||||||||    
T  23508564 atatacgacaccttgtatttatcttttaaaaaattataaatagaacattgctcattaaaaaaaaaatacattttgattttatcactggcctcttttcatt 23508465  T
Q  190 tccagagccgagcctccgaattctcagggacggccctgat 229  Q
     ||| ||||||||||||||||| ||| |||||| ||||||    
T  23508464 cccaaagccgagcctccgaattttcatggacggtcctgat 23508425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 51691980 - 51691913
Alignment:
Q  79 ggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  51691980 ggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatttaaatagaacattgctctttt 51691913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 4167992 - 4167910
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaata 125  Q
    ||||||||||||||| |||||| ||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4167992 ggttcctcatgtataaggtagtgattttcacctttgggtgtatcgcatatatacggcaccttgtatttatcttttaaaaaata 4167910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 23509915 - 23509846
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatac 96  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||    
T  23509915 tttggtgttaggtgggggttcctcatgtctacggtagtcattttcacctctaggtgtaccgcatatatac 23509846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 43 - 139
Target Start/End: Original strand, 27112036 - 27112132
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattg 139  Q
    |||||||||||||||||||||| |||||||  | | |||||| |||||||||| | |||||||||||||||||||||||||| ||||| ||||||||    
T  27112036 ggttcctcatgtatacggtagtgattttcacattttggtgtatcgcatatatatgtcaccttgtatttatcttttaaaaaatttaaattgaacattg 27112132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 212
Target Start/End: Complemental strand, 39329492 - 39329325
Alignment:
Q  44 gttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctct 143  Q
    ||||||| |||||||||||   |||||||||| |||||||| | |||||||||  |||||||||||||||||||||||||| |||| ||||||||| |||    
T  39329492 gttcctcctgtatacggtatggattttcatctttgggtgtatcacatatatacaacaccttgtatttatcttttaaaaaatttaaagagaacattgttct 39329393  T
Q  144 tttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattc 212  Q
    |||         |||||||| ||||||| || | |||||||||| || |||| |||||||||| |||||    
T  39329392 tttaaaaaaaa-tatgtttttattttattacggacctcttttcacttacagaaccgagcctccaaattc 39329325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 49 - 139
Target Start/End: Original strand, 36178684 - 36178774
Alignment:
Q  49 tcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattg 139  Q
    ||||||||| |||||| |||||||  | |||||||| |||||||||||| |||||||||||||||||||||| ||| ||||||||||||||    
T  36178684 tcatgtataaggtagtgattttcacatttgggtgtatcgcatatatacgacaccttgtatttatcttttaaataatttaaatagaacattg 36178774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 66 - 146
Target Start/End: Complemental strand, 39655332 - 39655252
Alignment:
Q  66 attttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 146  Q
    ||||||| || |||||||||||||||||| ||| || |||||||||||||||||||||| |||||||||||||| ||||||    
T  39655332 attttcacctttgggtgtaccgcatatatgcggaactttgtatttatcttttaaaaaatttaaatagaacattgttctttt 39655252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 10042101 - 10041998
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    |||||||| ||||||||||||| |||||||  | | |||||| | |||| |||||||||||||||||||| |||| |||||| |||||||||||||| ||    
T  10042101 ggttcctcctgtatacggtagtgattttcacatttaggtgtatcacatacatacggcaccttgtatttatttttttaaaaatttaaatagaacattgttc 10042002  T
Q  143 tttt 146  Q
    ||||    
T  10042001 tttt 10041998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 24396940 - 24397043
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    ||||||||||||||||| |||| ||||||| || || ||||| | ||||||||| ||||||| ||||||||||||||||||| |||||| || |||| ||    
T  24396940 ggttcctcatgtatacgatagtgattttcacctttgagtgtatcacatatatactgcaccttatatttatcttttaaaaaatttaaataaaatattgttc 24397039  T
Q  143 tttt 146  Q
    ||||    
T  24397040 tttt 24397043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 24969718 - 24969787
Alignment:
Q  159 gttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctga 228  Q
    |||||| |||||||||| ||||||||||||| |||||| |||||||||||||||| ||||||||||||||    
T  24969718 gttttgtttttatcactagcctcttttcattcccagagtcgagcctccgaattcttagggacggccctga 24969787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 2135422 - 2135326
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattg 139  Q
    |||||||||| |||||| |||| || || | || ||| |||| |||||||||||| |||||||||||||||||||||||||| ||||||||| ||||    
T  2135422 ggttcctcatatatacgatagtgatgtttacctttggatgtatcgcatatatacgacaccttgtatttatcttttaaaaaatttaaatagaatattg 2135326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 37745011 - 37744916
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaa-aaaatataaatagaacat 137  Q
    ||||||||| |||||||||||| ||||||| || ||| |||| ||||||||| || |||||| |||||||||||||| ||||| ||||||||||||    
T  37745011 ggttcctcaagtatacggtagtgattttcacctttggatgtatcgcatatatgcgacaccttatatttatcttttaaaaaaatttaaatagaacat 37744916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 40217238 - 40217327
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatag 132  Q
    |||| |||||||||| | || | |||||||||| ||| |||| |||||||||||| |||||| ||||||||||||||||||| |||||||    
T  40217238 ggttactcatgtatatgctaatgattttcatctttggatgtatcgcatatatacgacaccttatatttatcttttaaaaaatttaaatag 40217327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 51 - 146
Target Start/End: Complemental strand, 36362964 - 36362869
Alignment:
Q  51 atgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 146  Q
    ||||||| |||||| |||| ||  | ||||||||  ||||||||||||||| |||||||||||||||||||||| |||| ||| ||||| ||||||    
T  36362964 atgtatatggtagtgatttccacatttgggtgtattgcatatatacggcactttgtatttatcttttaaaaaatttaaacagagcattgttctttt 36362869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 980336 - 980396
Alignment:
Q  168 ttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctga 228  Q
    ||||||| |||||| ||| | | |||||||||||||||||||||||||||||||| |||||    
T  980336 ttatcaccggcctccttttaatcccagagccgagcctccgaattctcagggacggtcctga 980396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 13460305 - 13460361
Alignment:
Q  172 cactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctga 228  Q
    ||||| |||||||| ||| |||||| |||||||||||||||||| ||||||||||||    
T  13460305 cactgacctctttttattcccagagtcgagcctccgaattctcaaggacggccctga 13460361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 136
Target Start/End: Original strand, 15735102 - 15735189
Alignment:
Q  44 gttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaaca 136  Q
    ||||||||||||||||||| | |||||||| | | ||||||     |||||||| |  ||||||||||||||||||||||| |||||||||||    
T  15735102 gttcctcatgtatacggtaatgattttcattttttggtgta-----tatatacgacgtcttgtatttatcttttaaaaaatttaaatagaaca 15735189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 139
Target Start/End: Original strand, 45656181 - 45656277
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattg 139  Q
    ||||| ||||||||||| | || |||||||  | ||| | || |||||||||| | ||||||| |||||||||||||||||| |||||| |||||||    
T  45656181 ggttcgtcatgtatacgttcgtgattttcacatttggatttatcgcatatatatgacaccttgcatttatcttttaaaaaatttaaataaaacattg 45656277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 2975413 - 2975358
Alignment:
Q  156 tatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaatt 211  Q
    |||||||||||||||||| || ||||||||||||| ||||||||||| | ||||||    
T  2975413 tatgttttgattttatcattgacctcttttcattttcagagccgagcattcgaatt 2975358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 145
Target Start/End: Original strand, 24614018 - 24614061
Alignment:
Q  102 cttgtatttatcttttaaaaaatataaatagaacattgctcttt 145  Q
    ||||||||||||||||||||||| |||||||||||||| |||||    
T  24614018 cttgtatttatcttttaaaaaatttaaatagaacattgttcttt 24614061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 29425237 - 29425187
Alignment:
Q  81 tgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaata 131  Q
    ||||| |||||||||||||||||| ||||||| ||||||||||| ||||||    
T  29425237 tgtactgcatatatacggcaccttatatttattttttaaaaaatttaaata 29425187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 30507162 - 30507120
Alignment:
Q  104 tgtatttatcttttaaaaaatataaatagaacattgctctttt 146  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  30507162 tgtatttatcttttaaaaaatttaaatagaacattgttctttt 30507120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 11906954 - 11906904
Alignment:
Q  81 tgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaata 131  Q
    |||||| ||||||||||| |||||||||||||||||  |||||| ||||||    
T  11906954 tgtaccacatatatacggtaccttgtatttatctttataaaaatttaaata 11906904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 106523 - 106723
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  106523 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatat 106622  T
Q  127 aaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccct 226  Q
    ||||||||||||| ||||||         || ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||    
T  106623 aaatagaacattgttcttttaaaaaaaaatacgttttgattttatcactggcctcttttcattcccagagccgagcctccaaattcttagggacggccct 106722  T
Q  227 g 227  Q
    |    
T  106723 g 106723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1590 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold1590
Description:

Target: scaffold1590; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 360 - 257
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 142  Q
    ||||| |||||||||||||||| |||||||  | ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||    
T  360 ggttcatcatgtatacggtagtgattttcacatttgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattgttc 261  T
Q  143 tttt 146  Q
    ||||    
T  260 tttt 257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 206591 - 206496
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatt 138  Q
    |||||||||||||||||||||| ||||||| |  ||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||    
T  206591 ggttcctcatgtatacggtagtgattttcaccattgggtgtaccgcatatatacgacaccttgtatttatcttttacaaaatttaaatagaacatt 206496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 88 - 227
Target Start/End: Original strand, 183106 - 183244
Alignment:
Q  88 catatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnttatgttttgattttatcactggcctcttttca 187  Q
    ||||||||||  || |||||||||||||||||||||||||||||||||||  |||||||        | | ||||| |||||||||||||||||||||||    
T  183106 catatatacgatactttgtatttatcttttaaaaaatataaatagaacatctctcttttaaaaaaaat-acgttttaattttatcactggcctcttttca 183204  T
Q  188 tttccagagccgagcctccgaattctcagggacggccctg 227  Q
    || ||||||||||||||| ||||| |||||||||||||||    
T  183205 ttcccagagccgagcctctgaattttcagggacggccctg 183244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 181904 - 181969
Alignment:
Q  27 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatat 92  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  181904 tttggtgttagatgggggttcctcatgtatacggtagtcattttcacctctggatgtaccgcatat 181969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 173612 - 173516
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattg 139  Q
    ||||||||| |||||||||||| ||||| | || |||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  173612 ggttcctcacgtatacggtagtgatttttacctttgggtgtatcgcatatatacggtaccttgtatttatcttttaaaaaatttaaatagaacattg 173516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 43 - 139
Target Start/End: Original strand, 38926 - 39022
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattg 139  Q
    |||||||||| ||||||||||| |||||||  | || ||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  38926 ggttcctcatatatacggtagtgattttcacatttgtgtgtatcgcatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattg 39022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 24093 - 23993
Alignment:
Q  45 ttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 144  Q
    ||||| ||| |||||||| | |||||||  | ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||| ||||    
T  24093 ttccttatgcatacggtaatgattttcacttttgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatttaaatagaatattgttctt 23994  T
Q  145 t 145  Q
    |    
T  23993 t 23993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1320 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 138
Target Start/End: Original strand, 1355 - 1450
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatt 138  Q
    ||||||||||||||||| |||| |||||||  | ||||||||  |||||||||| ||||||| ||||||||||||||||| | |||||||||||||    
T  1355 ggttcctcatgtatacgatagtgattttcacatttgggtgtatagcatatatacagcaccttatatttatcttttaaaaattttaaatagaacatt 1450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 44 - 146
Target Start/End: Complemental strand, 230960 - 230858
Alignment:
Q  44 gttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctct 143  Q
    |||||||||||||| |||||| ||||||| || ||||| || |||||||||||  ||||||  ||||||||||||| |||| |||||||||||||| |||    
T  230960 gttcctcatgtataaggtagtgattttcacctttgggtatatcgcatatatacaacaccttaaatttatcttttaacaaatttaaatagaacattgttct 230861  T
Q  144 ttt 146  Q
    |||    
T  230860 ttt 230858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 40086 - 40191
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaata--taaatagaacattgc 140  Q
    |||| |||||||||||| | || ||||||| ||  ||||||||  |||| ||||||||||||||||||||||||||||||| |  ||||||||||||||     
T  40086 ggttgctcatgtatacgattgtgattttcaccttagggtgtacaacataaatacggcaccttgtatttatcttttaaaaaaaaattaaatagaacattgt 40185  T
Q  141 tctttt 146  Q
    ||||||    
T  40186 tctttt 40191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 138146 - 138251
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaata--taaatagaacattgc 140  Q
    |||| |||||||||||| | || ||||||| ||  ||||||||  |||| ||||||||||||||||||||||||||||||| |  ||||||||||||||     
T  138146 ggttgctcatgtatacgattgtgattttcaccttagggtgtacaacataaatacggcaccttgtatttatcttttaaaaaaaaattaaatagaacattgt 138245  T
Q  141 tctttt 146  Q
    ||||||    
T  138246 tctttt 138251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 16028 - 16095
Alignment:
Q  43 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtattt 110  Q
    |||| ||||||||||||||||| |||||||||| ||| ||||||||||| ||||| || |||||||||    
T  16028 ggtttctcatgtatacggtagtgattttcatctttggatgtaccgcatacatacgacatcttgtattt 16095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 16123 - 16168
Alignment:
Q  100 accttgtatttatcttttaaaaaatataaatagaacattgctcttt 145  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||    
T  16123 accttgtatttatcttttaaaaaatttaaatagaacatttctcttt 16168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 23879 - 23976
Alignment:
Q  38 gtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaac 135  Q
    ||||||||| ||  ||||||||||||||||||| || | |||| || || || | |||||||||||  ||||||| |||||||||| |||||||||||    
T  23879 gtgggggtttcttgtgtatacggtagtcatttttatttttgggggttccccaaaaatacggcacctcatatttattttttaaaaaaaataaatagaac 23976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 351413 - 351360
Alignment:
Q  66 attttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaa 119  Q
    ||||||| || |||||||||  |||||||||| |||||||||||||||||||||    
T  351413 attttcacctttgggtgtacaacatatatacgacaccttgtatttatcttttaa 351360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University