View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8066_low_8 (Length: 402)
Name: NF8066_low_8
Description: NF8066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8066_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 26 - 384
Target Start/End: Original strand, 8139426 - 8139786
Alignment:
| Q |
26 |
tcttctctcatgcctttcgaccgtactcttttctggtgggagccctatgctcattgaacaggtaaccttcaaaatcaaaactttatggaattcacatatt |
125 |
Q |
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| T |
8139426 |
tcttctctcatgcctttcgaccgtactcttttctggtgggagccctatgctcattgaacaggtaaccttcaaaatcaaaactttatggaattcacatatt |
8139525 |
T |
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| Q |
126 |
cactcacaaccataaatgagttttaactctgattgttctaacag--gtcgtcgctctctgggaacatcatggcaagaacaagtgcagaagcaagtgccgg |
223 |
Q |
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| T |
8139526 |
cactcacaaccataaatgagttttaactctgattgttctaacagtggtcgtcgctctctgggaacatcatggcaagaacaagtgcagaagcaagtgccgg |
8139625 |
T |
|
| Q |
224 |
gcagggaaagtcacatctagtgtcatggaaaataattggtaaactaacgaggtccttttctctttattgctgaaacaaatcaatatcagtgttgttaaat |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8139626 |
gcagggaaagtcacatctagtgtcatggaaaataattggtaaactaacgaggtccttttctctttattgctgaaacaaatcaatatcagtgttattaaat |
8139725 |
T |
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| Q |
324 |
atccggtatgtcggcgctatatcgctcttccgtgtcggattttagagtagacgatacaaaa |
384 |
Q |
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| T |
8139726 |
atccggtgtatcggcgctatatcgctcttccgtgtcggattttagagtagacgatacaaaa |
8139786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 71 - 277
Target Start/End: Complemental strand, 7499230 - 7499018
Alignment:
| Q |
71 |
tatgctcattgaacaggtaaccttcaaaatcaaaactttatggaattcacatattcactcacaaccataaatgagttttaactctgattgttctaaca-- |
168 |
Q |
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| T |
7499230 |
tatgctaaatgaacaggtaaccttcaaaatcaaaactttatggaattcacatat----tcacaaccataaacgagtttttattctgattgttctaacagt |
7499135 |
T |
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| Q |
169 |
ggtcgtcgctctc--------tgggaacatcatggcaagaacaagtgcagaagcaagtgccgggcagggaaagtcacatctagtgtcatggaaaataatt |
260 |
Q |
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| T |
7499134 |
ggtcgtcgctctctgattgtgtgggaatatcatggcaagaacaagtgcagaagaaagttccgggtgggtaaagtggcatctaatgtcatggaaaaaaatt |
7499035 |
T |
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| Q |
261 |
ggtaaactaacgaggtc |
277 |
Q |
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|||||||||| |||||| |
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| T |
7499034 |
ggtaaactaaagaggtc |
7499018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 124
Target Start/End: Complemental strand, 7502297 - 7502223
Alignment:
| Q |
50 |
actcttttctggtgggagccctatgctcattgaacaggtaaccttcaaaatcaaaactttatggaattcacatat |
124 |
Q |
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| T |
7502297 |
actcttttctggtgagggccctatgtgcattgaagaggtaaacttcaaaatcagaactttattgaattcacatat |
7502223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 287
Target Start/End: Complemental strand, 7502172 - 7502081
Alignment:
| Q |
197 |
aagaacaagtgcagaagcaagtgccgggcagggaaagtcacatctagtgtcatgg-aaaataattggtaaactaacgaggtccttttctctt |
287 |
Q |
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| T |
7502172 |
aagaacaagtgcagaagcaagcaccaggcggggaaagtgacgtctagtgtcatggaaaaaaaattggtaaactaaagagttccctttttctt |
7502081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 7499498 - 7499460
Alignment:
| Q |
7 |
tcttgtgtgtaatttgacatcttctctcatgcctttcga |
45 |
Q |
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| T |
7499498 |
tcttgtgtgtaatttgacatcttctctcacgcctttcga |
7499460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 308 - 384
Target Start/End: Original strand, 9130084 - 9130160
Alignment:
| Q |
308 |
atcagtgttgttaaatatccggtatgtcggcgctatatcgctcttccgtgtcggattttagagtagacgatacaaaa |
384 |
Q |
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|||||||||||||||||||||| || || |||||||| |||||||||| ||||| |||| ||||||||||||||| |
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| T |
9130084 |
atcagtgttgttaaatatccggcatatcagcgctatactgctcttccgtatcggaagttagggtagacgatacaaaa |
9130160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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