View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8067_high_1 (Length: 462)
Name: NF8067_high_1
Description: NF8067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8067_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 13 - 382
Target Start/End: Complemental strand, 38052371 - 38052002
Alignment:
| Q |
13 |
aatatcataatcactaggttgtatgctttttaatataattaaatcccaatttaaagagcaccaaaacatcaacttacagagatttaaacaatttgttatg |
112 |
Q |
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| T |
38052371 |
aatatcataatcactaggttgtatgctttttaatataattaaatcccaatttaaagagcaccaaaacatcaacttacagagatttaaacaatttgttatg |
38052272 |
T |
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| Q |
113 |
gtttgtattttagtttcagactctatcaaaaagtttgatggaactatgtttaaaatccggcggttttggagatactttttagagaaaggttttgttgaac |
212 |
Q |
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| T |
38052271 |
gtttgtattttagtttcagactctatcaaaaagtttgatggaactatgtttaaaatccggcagttttggagatactttttagagaaagattttgttgaac |
38052172 |
T |
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| Q |
213 |
cnnnnnnngaagaaaatttcaagagtttgaagtttagggcaattctggagcaatataatagaagtttagttttagttttgtaatatgaattgattttttc |
312 |
Q |
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| T |
38052171 |
caaaaaaagaagaaaatttcaagagtttgaagtttagggcaattctagagcaatataatagaagtttagttttagttttgtaatatgaattgatttcttc |
38052072 |
T |
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| Q |
313 |
atcgagaagactcttctccatctacaacggacaataagaagatacatacttacatacgtacatacatatt |
382 |
Q |
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| T |
38052071 |
atcgagaagactcttctccatctacaacgaacaataagaagatacatacttacatacgtacatacatatt |
38052002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 442
Target Start/End: Complemental strand, 38051897 - 38051845
Alignment:
| Q |
389 |
caaggcatagaataaacaacagatagagtgaaaggggcatgataagagaggttg |
442 |
Q |
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| T |
38051897 |
caaggcatagaataaacaacagatagagtgaaa-aggcatcataagagaggttg |
38051845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 40254061 - 40254122
Alignment:
| Q |
143 |
aagtttgatggaactatgtttaaaatccggcggttttggagatactttttagagaaaggttttg |
206 |
Q |
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| T |
40254061 |
aagtttgatcgaactatgtttaaaacccagtggttatggagata--ttttagagaaaagttttg |
40254122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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