View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8067_low_3 (Length: 283)
Name: NF8067_low_3
Description: NF8067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8067_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 2861042 - 2860788
Alignment:
| Q |
10 |
agtttggtggtcttcaaatagcaatggtccaacaagaaaagcatcttcaggaagacctaattttgatgtggtaagatacttaaccctaactttccacaaa |
109 |
Q |
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|||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2861042 |
agtttggtggtcttcaaacagcaaagctccaacaagaaaagcatcttcaggaagacctaatttcgatgtggtaagatacttaaccctaactttccacaaa |
2860943 |
T |
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| Q |
110 |
aggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctattatatttaagaataagcgactaaagctttacaccaaca |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2860942 |
aggcatcgcgatctcattacttcctcttacatacaacatgtgttggaacaaggaaaggctattatatttaagaataggcgactaaagctttacaccaaca |
2860843 |
T |
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| Q |
210 |
atagcggttgttggtggatgtcggggtggagtcacacaaattttgcacaccctgc |
264 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2860842 |
atagcggttgttggtggatgtcagggtggagtcacacaaattttgcacaccctgc |
2860788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 2866421 - 2866167
Alignment:
| Q |
10 |
agtttggtggtcttcaaatagcaatggtccaacaagaaaagcatcttcaggaagacctaattttgatgtggtaagatacttaaccctaactttccacaaa |
109 |
Q |
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|||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2866421 |
agtttggtggtcttcaaacagcaaagctccaacaagaaaagcatcttcaggaagacctaatttcgatgtggtaagatacttaaccctaactttccacaaa |
2866322 |
T |
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| Q |
110 |
aggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctattatatttaagaataagcgactaaagctttacaccaaca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
2866321 |
aggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctgttatatttaagaataggcgactaaagctttacaccaaca |
2866222 |
T |
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| Q |
210 |
atagcggttgttggtggatgtcggggtggagtcacacaaattttgcacaccctgc |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2866221 |
atagcggttgttggtggatgtcggggtggagtcacacaaattttgcgcaccctgc |
2866167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 2885608 - 2885357
Alignment:
| Q |
10 |
agtttggtggtcttcaaatagcaatggtccaacaagaaaagcatcttcaggaagacctaattttgatgtggtaagatacttaaccctaactttccacaaa |
109 |
Q |
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||||||||||||| |||||||||| | ||||| |||||||||||||||||||||| || || ||||||||||||| ||| |||||||||||||||||| |
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| T |
2885608 |
agtttggtggtctgcaaatagcaaagctccaagaagaaaagcatcttcaggaagatct---ttcgatgtggtaagatgcttcaccctaactttccacaaa |
2885512 |
T |
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| Q |
110 |
aggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctattatatttaagaataagcgactaaagctttacaccaaca |
209 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2885511 |
aggcatcgcgatctcattacttcctcttacatacaacatgtgttggaacaaggaaaggctattatatttaagaataggcgactaaagctttacaccaaca |
2885412 |
T |
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| Q |
210 |
atagcggttgttggtggatgtcggggtggagtcacacaaattttgcacaccctgc |
264 |
Q |
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|| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2885411 |
atggtggttgttggtggatgtcggggtggagtcacacaaattttgcacaccctgc |
2885357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 82 - 171
Target Start/End: Original strand, 2841947 - 2842036
Alignment:
| Q |
82 |
aagatacttaaccctaactttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctat |
171 |
Q |
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||||| |||||||||||||||||| ||||||||||| || ||||| ||| ||||||||||||||||||| ||||| |||||||||||||| |
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| T |
2841947 |
aagattcttaaccctaactttccataaaaggcatcgtgaactcatcactacctcttacatacaacatgttttggaacaaggaaaggctat |
2842036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 2910426 - 2910316
Alignment:
| Q |
55 |
ttcaggaagacctaattttgatgtggtaagatacttaaccctaactttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttg |
154 |
Q |
| |
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||||||||||||||||| |||||| |||||||| |||||||||| ||| ||||||||||| | |||||||| ||| |||| ||||| ||||||||||| |
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| T |
2910426 |
ttcaggaagacctaattcggatgtgataagatacctaaccctaaccttcgacaaaaggcatggtgatctcatcactacctcgtacatccaacatgtgtta |
2910327 |
T |
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| Q |
155 |
gaccaaggaaa |
165 |
Q |
| |
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|| |||||||| |
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| T |
2910326 |
gaacaaggaaa |
2910316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 204
Target Start/End: Complemental strand, 2833673 - 2833551
Alignment:
| Q |
82 |
aagatacttaaccctaactttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctattatatttaag |
181 |
Q |
| |
|
||||| |||||||||||| ||||| |||| |||||| || |||| ||| |||||||||| |||||||||||||| ||||||| ||||||| ||| |
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| T |
2833673 |
aagattcttaaccctaaccttccataaaaagcatcgtgaagtcatcactacctcttacattcaacatgtgttggatgaaggaaaatctattatgagcaag |
2833574 |
T |
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| Q |
182 |
aataagcgactaaagctttacac |
204 |
Q |
| |
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|||| || ||||||||||||||| |
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| T |
2833573 |
aataggcaactaaagctttacac |
2833551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 14577694 - 14577778
Alignment:
| Q |
88 |
cttaaccctaactttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctatt |
172 |
Q |
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|||||| ||||| |||||||||||| | || | |||||| ||| |||||||||||||| |||||||||| ||||||| |||||| |
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| T |
14577694 |
cttaacactaaccttccacaaaaggtaccgtggtctcatcactacctcttacatacaatatgtgttggatgaaggaaaagctatt |
14577778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 210
Target Start/End: Original strand, 2828590 - 2828712
Alignment:
| Q |
88 |
cttaaccctaactttccacaaaaggcatcgcgatctcattacttcctcttacatacaacatgtgttggaccaaggaaaggctattatatttaagaataag |
187 |
Q |
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|||||||||||| |||||||||| |||| || || |||||| ||||| || ||||||||||| || |||||||||||||||| ||| ||||||| | |
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| T |
2828590 |
cttaaccctaaccttccacaaaaaatatcgtgagcttattactaggtcttatatccaacatgtgttagaacaaggaaaggctattacattgaagaatagg |
2828689 |
T |
|
| Q |
188 |
cgactaaagctttacaccaacaa |
210 |
Q |
| |
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|| |||||||| |||||||| |
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| T |
2828690 |
aagcttaagctttataccaacaa |
2828712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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