View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8068_low_3 (Length: 272)
Name: NF8068_low_3
Description: NF8068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8068_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 9452367 - 9452459
Alignment:
| Q |
10 |
agtttggtgtttctaatgatgttgatctgttaattcactcccaccctccagaggggctcattcctttgctgcaatcggatgaattgggaacgc |
102 |
Q |
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| T |
9452367 |
agtttggtgcttctaatgatgttgatctgttaattcactcccaccctccagaggggttcattcctttgctgcaatcggatgaattaggaacgc |
9452459 |
T |
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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 9452544 - 9452611
Alignment:
| Q |
186 |
cagaattaaactaaaaccttagaagagatacatgtaatatcatctaaatgttattggattgtgattga |
253 |
Q |
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| T |
9452544 |
cagaattaaactaaaaccttagaagagatacatgtaatatcatctaaatgttattggattgtgattga |
9452611 |
T |
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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 9431608 - 9431674
Alignment:
| Q |
187 |
agaattaaactaaaaccttagaagagatacatgtaatatcatctaaatgttattggattgtgattga |
253 |
Q |
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| T |
9431608 |
agaattaaactgaaaccttagaaaagatatgtataatatgatctaaatgttacgggattgtgattga |
9431674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 26706701 - 26706612
Alignment:
| Q |
13 |
ttggtgtttctaatgatgttgatctgttaattcactcccaccctccagaggggctcattcctttgctgcaatcggatgaattgggaacgc |
102 |
Q |
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| T |
26706701 |
ttggtgcttctaatgatgttgaactgttaattcacgcccaccctccagaggagctccttcctttgctgcagtcggatgaattaggaacgc |
26706612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 40736637 - 40736556
Alignment:
| Q |
20 |
ttctaatgatgttgatctgttaattcactcccaccctccagaggggctcattcctttgctgcaatcggatgaattgggaacg |
101 |
Q |
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| T |
40736637 |
ttctaatgatgttgatttgttaattcactcccaccctccagatgggctccttcctttgctgcagtcggatgaattaggaacg |
40736556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 34249637 - 34249706
Alignment:
| Q |
23 |
taatgatgttgatctgttaattcactcccaccctccagaggggctcattcctttgctgcaatcggatgaa |
92 |
Q |
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| T |
34249637 |
taatgatgttgatttgttaattcactcccaccctccagacgggctccttcctttgctgcagtcggatgaa |
34249706 |
T |
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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 47158802 - 47158720
Alignment:
| Q |
20 |
ttctaatgatgttgatctgttaattcactcccaccctccagaggggctcattcctttgctgcaatcggatgaattgggaacgc |
102 |
Q |
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| T |
47158802 |
ttctaacgatgttgatttgttaattcactcccaccctccagacggactcctccctttgctgcagtcggatgaattaggaacgc |
47158720 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 7585614 - 7585536
Alignment:
| Q |
24 |
aatgatgttgatctgttaattcactcccaccctccagaggggctcattcctttgctgcaatcggatgaattgggaacgc |
102 |
Q |
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| T |
7585614 |
aatgatgttgatttgctaattcactcccaccctccagacgggctctaccctttgttgcagtcggatgaattaggaacgc |
7585536 |
T |
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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 6180403 - 6180485
Alignment:
| Q |
20 |
ttctaatgatgttgatctgttaattcactcccaccctccagaggggctcattcctttgctgcaatcggatgaattgggaacgc |
102 |
Q |
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| T |
6180403 |
ttctaacgaagttgatttgttaattcactaccaccctccagacggactcctccctttgctgcagtcagatgaattaggaacgc |
6180485 |
T |
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