View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8068_low_4 (Length: 238)
Name: NF8068_low_4
Description: NF8068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8068_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 51706926 - 51706705
Alignment:
| Q |
1 |
ctacttaaaaacaatgcattgctagttttaccaaacaattgattacttataactaattacataggagtatatacatattgtcaaaaaaggtactatgtga |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51706926 |
ctacttaaaaacaatgcattgctatttttaccaaacaattgattacttataactaagtacataggagtatatacatattgtcaaaaaaggtactatgtga |
51706827 |
T |
|
| Q |
101 |
ttaattcaagatgccaaatgatggctatctagctgtcttcaaatcttcctaccttttttcttcatttagtaaatatggccatacttcatcaacaccagag |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
51706826 |
ttaattcaagatgccaaatgatggttatctagctgtcttcatatcttcctaccttttttctttatttagtaaatatggccatacttcatc-acaccagag |
51706728 |
T |
|
| Q |
201 |
gaaattcacatgtaccatctttc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
51706727 |
gaaattcacatgtaccatctttc |
51706705 |
T |
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