View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8069_high_1 (Length: 814)

Name: NF8069_high_1
Description: NF8069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8069_high_1
NF8069_high_1
[»] chr3 (28 HSPs)
chr3 (1-794)||(18537275-18538070)
chr3 (424-794)||(18546690-18547062)
chr3 (3-192)||(10578466-10578657)
chr3 (3-192)||(15341353-15341544)
chr3 (7-192)||(17780256-17780443)
chr3 (7-192)||(19081557-19081744)
chr3 (3-192)||(1646630-1646821)
chr3 (3-192)||(15356720-15356911)
chr3 (3-192)||(15600018-15600209)
chr3 (3-192)||(15606563-15606754)
chr3 (3-192)||(17196882-17197073)
chr3 (421-727)||(18548857-18549162)
chr3 (3-192)||(10571700-10571892)
chr3 (3-192)||(16481592-16481783)
chr3 (29-192)||(17137260-17137426)
chr3 (3-192)||(32056179-32056370)
chr3 (7-192)||(6110971-6111169)
chr3 (7-192)||(13517689-13517878)
chr3 (421-660)||(18549981-18550221)
chr3 (73-192)||(13212210-13212331)
chr3 (74-192)||(23014548-23014668)
chr3 (8-115)||(16201180-16201288)
chr3 (423-501)||(18535876-18535957)
chr3 (759-796)||(6031203-6031240)
chr3 (7-45)||(13212331-13212369)
chr3 (750-796)||(32287067-32287112)
chr3 (748-797)||(4250701-4250749)
chr3 (753-797)||(52309377-52309422)
[»] scaffold0386 (6 HSPs)
scaffold0386 (197-794)||(2856-3453)
scaffold0386 (608-794)||(14703-14892)
scaffold0386 (423-505)||(4783-4868)
scaffold0386 (454-595)||(14574-14712)
scaffold0386 (424-505)||(9024-9108)
scaffold0386 (436-505)||(13401-13470)
[»] chr8 (11 HSPs)
chr8 (4-192)||(6095028-6095218)
chr8 (3-192)||(21941547-21941740)
chr8 (3-192)||(22172367-22172558)
chr8 (3-192)||(15327105-15327296)
chr8 (3-192)||(15507474-15507665)
chr8 (5-192)||(28548929-28549119)
chr8 (75-192)||(24643504-24643624)
chr8 (749-793)||(14349312-14349357)
chr8 (3-115)||(29230378-29230487)
chr8 (750-796)||(44008492-44008539)
chr8 (749-797)||(12583327-12583376)
[»] chr1 (10 HSPs)
chr1 (4-192)||(18531648-18531839)
chr1 (3-192)||(18252912-18253103)
chr1 (3-194)||(27130518-27130711)
chr1 (3-192)||(27309687-27309877)
chr1 (7-192)||(16358173-16358360)
chr1 (5-192)||(9076013-9076202)
chr1 (20-115)||(36815748-36815843)
chr1 (143-192)||(36815911-36815960)
chr1 (750-796)||(3087499-3087545)
chr1 (749-798)||(21110912-21110962)
[»] chr4 (36 HSPs)
chr4 (3-190)||(10620442-10620631)
chr4 (3-190)||(10627524-10627713)
chr4 (3-192)||(4425749-4425940)
chr4 (7-192)||(8846085-8846272)
chr4 (3-192)||(8859074-8859265)
chr4 (4-192)||(28392277-28392467)
chr4 (4-192)||(19919641-19919831)
chr4 (4-192)||(19925870-19926060)
chr4 (7-189)||(869506-869690)
chr4 (436-762)||(5674623-5674955)
chr4 (7-192)||(5708219-5708406)
chr4 (7-192)||(5714854-5715042)
chr4 (475-794)||(9287654-9287966)
chr4 (3-192)||(18269955-18270146)
chr4 (3-192)||(55613590-55613781)
chr4 (3-192)||(18263094-18263285)
chr4 (3-192)||(26971345-26971538)
chr4 (3-152)||(5667202-5667354)
chr4 (421-665)||(5615961-5616202)
chr4 (436-495)||(5685649-5685708)
chr4 (3-55)||(26964592-26964644)
chr4 (4-115)||(47388065-47388176)
chr4 (147-192)||(5667385-5667430)
chr4 (740-794)||(5693987-5694041)
chr4 (138-192)||(10676851-10676905)
chr4 (138-192)||(10890491-10890545)
chr4 (80-174)||(35224456-35224553)
chr4 (438-483)||(5691850-5691895)
chr4 (550-612)||(9196482-9196544)
chr4 (143-192)||(47388244-47388294)
chr4 (750-798)||(26156556-26156604)
chr4 (749-795)||(26060814-26060861)
chr4 (764-794)||(5687103-5687133)
chr4 (540-602)||(9276831-9276893)
chr4 (750-795)||(5820813-5820857)
chr4 (749-797)||(19821023-19821072)
[»] scaffold0390 (2 HSPs)
scaffold0390 (3-192)||(6043-6234)
scaffold0390 (3-192)||(13059-13250)
[»] scaffold0061 (1 HSPs)
scaffold0061 (3-192)||(5330-5521)
[»] chr6 (16 HSPs)
chr6 (3-192)||(17690574-17690765)
chr6 (3-192)||(27380361-27380552)
chr6 (3-192)||(27470744-27470935)
chr6 (3-192)||(29309772-29309963)
chr6 (3-192)||(29316731-29316922)
chr6 (4-192)||(11652580-11652770)
chr6 (7-175)||(27297558-27297728)
chr6 (7-192)||(17683595-17683782)
chr6 (3-192)||(25536298-25536490)
chr6 (112-192)||(16558717-16558797)
chr6 (147-192)||(28755534-28755579)
chr6 (75-155)||(16393660-16393743)
chr6 (750-796)||(9313537-9313584)
chr6 (750-796)||(16731649-16731696)
chr6 (76-115)||(18336553-18336592)
chr6 (750-795)||(24371530-24371574)
[»] scaffold0234 (2 HSPs)
scaffold0234 (3-192)||(10346-10537)
scaffold0234 (3-192)||(1453-1646)
[»] chr7 (16 HSPs)
chr7 (3-192)||(11535196-11535387)
chr7 (3-192)||(11542114-11542305)
chr7 (3-192)||(29328666-29328861)
chr7 (4-192)||(18561913-18562105)
chr7 (29-192)||(24850719-24850884)
chr7 (3-192)||(12739424-12739615)
chr7 (7-190)||(15153352-15153536)
chr7 (3-192)||(12751741-12751932)
chr7 (3-192)||(11557207-11557392)
chr7 (4-70)||(9978834-9978900)
chr7 (21-155)||(13393080-13393217)
chr7 (3-67)||(2653122-2653186)
chr7 (138-192)||(13393006-13393060)
chr7 (746-798)||(4595765-4595818)
chr7 (749-796)||(22083193-22083241)
chr7 (86-134)||(9978782-9978832)
[»] scaffold1199 (1 HSPs)
scaffold1199 (3-190)||(4-198)
[»] chr5 (9 HSPs)
chr5 (4-192)||(19706307-19706497)
chr5 (4-192)||(19713635-19713823)
chr5 (5-192)||(24694596-24694783)
chr5 (5-192)||(24701360-24701547)
chr5 (3-192)||(18565594-18565791)
chr5 (749-797)||(21335458-21335507)
chr5 (750-797)||(7271337-7271385)
chr5 (750-797)||(21332440-21332488)
chr5 (750-797)||(33552440-33552488)
[»] chr2 (5 HSPs)
chr2 (7-192)||(21329380-21329569)
chr2 (10-192)||(22790974-22791158)
chr2 (3-56)||(41664786-41664839)
chr2 (748-797)||(5666818-5666868)
chr2 (142-192)||(18620681-18620730)
[»] scaffold0433 (1 HSPs)
scaffold0433 (7-192)||(7989-8177)
[»] scaffold0008 (1 HSPs)
scaffold0008 (3-192)||(229521-229716)
[»] scaffold0220 (1 HSPs)
scaffold0220 (7-192)||(19194-19382)
[»] scaffold0063 (1 HSPs)
scaffold0063 (3-192)||(6404-6601)
[»] scaffold0753 (1 HSPs)
scaffold0753 (549-602)||(1680-1733)
[»] scaffold1952 (1 HSPs)
scaffold1952 (550-612)||(306-368)
[»] scaffold0032 (1 HSPs)
scaffold0032 (3-115)||(107381-107494)
[»] scaffold0502 (1 HSPs)
scaffold0502 (76-115)||(10-49)
[»] scaffold1826 (1 HSPs)
scaffold1826 (550-612)||(524-586)
[»] scaffold0911 (1 HSPs)
scaffold0911 (550-612)||(1133-1195)
[»] scaffold0045 (1 HSPs)
scaffold0045 (749-797)||(90079-90128)
[»] scaffold0002 (2 HSPs)
scaffold0002 (758-795)||(99007-99044)
scaffold0002 (758-795)||(118221-118258)


Alignment Details
Target: chr3 (Bit Score: 700; Significance: 0; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 700; E-Value: 0
Query Start/End: Original strand, 1 - 794
Target Start/End: Complemental strand, 18538070 - 18537275
Alignment:
Q  1 accaaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctattt 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18538070 accaaggtttagagagcgacggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaggttcataatgcttcagcacaagagttctattt 18537971  T
Q  101 atagaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataatggatc 198  Q
    |||||||||||||||  ||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  18537970 atagaatcacttgtgcggtcagcaagacaacacttaactacactgtaccttacggtgaaccgcgtttctctattttacttaaattaaataataatggatc 18537871  T
Q  199 tttaaaaacatgcacaaataaatatatctttttatttcaattcnnnnnnncagtataaatacgttgtttaggttataatggatcttaggtaaaaggtgga 298  Q
    ||||||||||||||||||||||||||| ||||||||| |||||       |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18537870 tttaaaaacatgcacaaataaatatatatttttattttaattcaaaaaaacagtataaatgcgttgtttaggttataatggatcttaggtaaaaggtgga 18537771  T
Q  299 ataattcgaaaagtaggtttcacaaaataattggacgtaagcatcttcttactggtctaacaaaacattcctacaccacatgttaacttaagggactaga 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18537770 ataattcgaaaagtaggtttcacaaaataattggacgtaagcatcttcttactggtctaacaaaacattcctacaccacatgttaacttaagggactaga 18537671  T
Q  399 gaattgacattacatgacaattgatcatgtaataaacataatcaaaataattgaatacaattttactaacttgtcatcctttaaataattttattatatt 498  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18537670 gaattgacattacatgacaattgatcatgtaataaacataaccaaaataattgaatacaattttactaacttgtcatcctttaaataattttattatatt 18537571  T
Q  499 tttaacctttcatgagagtaaagtgaataaatatatatttatataccactataaagttatgtacaaatataaatcaccgttggatatttatgaacaagta 598  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  18537570 tttaacctttcatgagagtaaagtgaataaatatatatttatataccactataaagttatgtacaaatataaatcaccgttggatatttatgaatatgta 18537471  T
Q  599 gaacatatgttatgaacaatctattttttattaaatcattggatcataaataatttatatttgaaaaatttgattgcattatttattccattttcttatt 698  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18537470 gaacatatgttatgaacaatcttttttttattaaatcattggatcataaataatttatatttgaaaaatttgattgcattatttattccattttcttatt 18537371  T
Q  699 cacatcaattgtatgaatcaattatataacattggctcctttcttatatattgatagacttttaacaagtgtactaaaaattatcgaagcaataaa 794  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18537370 tacatcaattgtatgaatcaattatataacattggctcctttcttatatattaatagacttttaacaagtgtactaaaaattatcgaagcaataaa 18537275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 424 - 794
Target Start/End: Complemental strand, 18547062 - 18546690
Alignment:
Q  424 catgtaataaacataat---caaaataattgaatacaattttactaacttgtcatcctttaaataattttattatatttttaacctttcatgagagtaaa 520  Q
    |||||||||||||||||   ||||||||||||||||| ||||||||| || ||||| ||||||||||||||||||  ||||||||||| ||||||||| |    
T  18547062 catgtaataaacataataatcaaaataattgaatacagttttactaatttatcatcatttaaataattttattattcttttaaccttt-atgagagtaga 18546964  T
Q  521 gtgaataaatatatatttatataccactataaagttatgtacaaatataaatcaccgttggatatttatgaacaagtagaacatatgttatgaacaatct 620  Q
    | | | ||| |||||  | ||||| |  ||||| |||||||  |||||||| |||| ||||||||||||||||||||||||| |||||||||| | ||||    
T  18546963 ggggaaaaa-atataggtttatacaataataaatttatgtatgaatataaaacaccattggatatttatgaacaagtagaacgtatgttatgagctatct 18546865  T
Q  621 atttttta-ttaaatcattggatcataaataatttatatttgaaaaatttgattgcattatttattccattttcttattcacatcaattgtatgaatcaa 719  Q
    |||||||| |||||||||| ||||||||| ||| ||||||| ||||| || ||||||| |||||||  | ||||||||||||||||||| || |||||||    
T  18546864 attttttaattaaatcattagatcataaagaatatatatttaaaaaaattcattgcatgatttattttactttcttattcacatcaattatacgaatcaa 18546765  T
Q  720 ttatataa-cattggctcctttcttatatattgatagacttttaacaagtgtactaaaaattatcgaagcaataaa 794  Q
    |||||||| ||||||| ||  |||| ||||||||||||||||||| |  |||| ||||||||||| ||| ||||||    
T  18546764 ttatataatcattggc-cccctcttgtatattgatagacttttaaaatatgtattaaaaattatcaaagtaataaa 18546690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 10578466 - 10578657
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| |||||||||||    
T  10578466 caaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctatttat 10578565  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||  ||||| || ||||||||||||||  |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10578566 agaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtgaaccgcgtttctctatttttggtaaattaaataataa 10578657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 15341353 - 15341544
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| |||||||||||    
T  15341353 caaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctatttat 15341452  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||  ||||| || ||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15341453 agaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 15341544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 7 - 192
Target Start/End: Original strand, 17780256 - 17780443
Alignment:
Q  7 gtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttatagaa 106  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| |||||||||||||||    
T  17780256 gtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctatttatagaa 17780355  T
Q  107 tcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||  |||||||| ||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17780356 tcacttgtgtggtcaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 17780443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 7 - 192
Target Start/End: Original strand, 19081557 - 19081744
Alignment:
Q  7 gtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttatagaa 106  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| |||||||||||||||    
T  19081557 gtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctatttatagaa 19081656  T
Q  107 tcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||  |||||||| ||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19081657 tcacttgtgtggtcaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 19081744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 1646630 - 1646821
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    ||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||  ||  |||||||||| |||||| |||||||||||    
T  1646630 caaggtttagagagcgacgactagggtttcacaacttttgttaattaggttaagcactcacaaaaaattagtaatgcttcaacacaagggttctatttat 1646729  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||  |||||||||||||||||||||||  | || |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1646730 agaatcacttgtgtggtcagcaagacaacacttaaatgcaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 1646821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 15356720 - 15356911
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| |||||||||||    
T  15356720 caaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctatttat 15356819  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||  ||||| || |||||||||| |||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15356820 agaatcacttgtgtggacaacaagacaacaattaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 15356911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 15600018 - 15600209
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  ||||| |||| |||||| |||||||||||    
T  15600018 caaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgtttcaacacaagggttctatttat 15600117  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||  ||||| || ||||||||||||||  |||| | |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15600118 agaatcacttgtgtggacaacaagacaacacttaaatacaccataccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 15600209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 15606563 - 15606754
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  ||||| |||| |||||| |||||||||||    
T  15606563 caaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgtttcaacacaagggttctatttat 15606662  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||  ||||| || ||||||||||||||  |||| | |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15606663 agaatcacttgtgtggacaacaagacaacacttaaatacaccataccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 15606754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 17196882 - 17197073
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||| ||||| |||  |||||| |||  |||||||||| |||||| |||||||||||    
T  17196882 caaggtttagagagcggcggctagggtttcacaacttttgtgaattaagttaagcacaaacaaaaagttagtaatgcttcaacacaagggttctatttat 17196981  T
Q  103 agaatcacttg--tggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||||  |||||||||||||||||||||  ||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17196982 agaatcacttgtctggtcagcaagacaacacttaaatacacagtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 17197073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 421 - 727
Target Start/End: Complemental strand, 18549162 - 18548857
Alignment:
Q  421 gatcatgtaataaacataat---caaaataattgaatacaattttactaacttgtcatcctttaaataattttattatatttttaacctttcatgagagt 517  Q
    ||||||||||||||||||||   |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||     
T  18549162 gatcatgtaataaacataataatcaaaataattaaatacaattttactaacttgtcatcctttaaataattttattattttttaaacctttcataagagc 18549063  T
Q  518 aaagtgaataaatatatatttatataccactataaagttatgtacaaatataaatcaccgttggatatttatgaacaagtagaacatatgttatgaacaa 617  Q
    || | ||| ||||||   |    ||||||  |||||||| ||||  |||||||| || | ||||||||||||||||||  ||||| ||| || ||| |||    
T  18549062 aatg-gaaaaaatatgctt----ataccatcataaagttgtgtatgaatataaaacatcattggatatttatgaacaa--agaacgtattttctgagcaa 18548970  T
Q  618 tctatttttt---attaaatcattggatcataaataatttatatttgaaaaatttgattgcattatttattccattttcttattcacatcaattgtatga 714  Q
    ||||||||||   |||||||||||   ||||||| ||||||||||| ||||| || ||||||| |||||||||| ||||||||||||||||||| || ||    
T  18548969 tctatttttttttattaaatcattatctcataaagaatttatatttaaaaaaattcattgcataatttattccactttcttattcacatcaattatacga 18548870  T
Q  715 atcaattatataa 727  Q
    |||||||||||||    
T  18548869 atcaattatataa 18548857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 10571700 - 10571892
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| |||||||||||    
T  10571700 caaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctatttat 10571799  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctcta-tttttcgtaaattaaataataa 192  Q
    |||||||||  ||||| || ||||||||||||||  ||||  |||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  10571800 agaatcacttgtgtggacaacaagacaacacttaaatacactgtaccttacggtgaaccgcgtttctctattttttggtaaattaaataataa 10571892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 16481592 - 16481783
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||  | ||||||||||||||||||||||||||| ||||||||||| ||   |||||||||| |||||| |||||||||||    
T  16481592 caaggtttagagagcggcggctgag-tttcacaacttttgtgaattaggttaagcactcacaaaaagtaagtaatgcttcaacacaagggttctatttat 16481690  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctc-tatttttcgtaaattaaataataa 192  Q
    |||||||||  ||||| || ||||||||||||||  |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16481691 agaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtgaaccgcgtttctcttatttttcgtaaattaaataataa 16481783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 29 - 192
Target Start/End: Complemental strand, 17137426 - 17137260
Alignment:
Q  29 tttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttatagaatcactt---gtggtcagcaaga 125  Q
    ||||||||||||||| ||||||||||| ||||||||||| |||  |||||||||| |||||| |||||||||||| ||||||||   |||||||||||||    
T  17137426 tttcacaacttttgttaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctatttataaaatcactttgtgtggtcagcaaga 17137327  T
Q  126 caacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17137326 caacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 17137260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 32056179 - 32056370
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| ||||||||  |||||||||||||||||||||||||| || |||||||| |||  |||||||| | |||||| |||||||||||    
T  32056179 caaggtttagagagcggcggctagggcttcacaacttttgtgaattaggttaagcaatcacaaaaagttagtaatgcttgaacacaagggttctatttat 32056278  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||  |||| ||||||||||||||||||  ||||  ||||||||| ||| || |||||||||||||||||||||||||||||||||    
T  32056279 agaatcacttgtgtgatcagcaagacaacacttaaatacactgtaccttacagtggactgcgtttctctatttttcgtaaattaaataataa 32056370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 7 - 192
Target Start/End: Complemental strand, 6111169 - 6110971
Alignment:
Q  7 gtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcat-----------aatgcttcagcacaagagttc 95  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |           ||||||||| |||||| ||||    
T  6111169 gtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagtttttttttttttggtaatgcttcaacacaagggttc 6111070  T
Q  96 tatttatagaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    ||||||||||||||||||||  | || ||||||||||||||  |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6111069 tatttatagaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtgaaccgcgtttctctatttttggtaaattaaataataa 6110971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 7 - 192
Target Start/End: Complemental strand, 13517878 - 13517689
Alignment:
Q  7 gtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttatagaa 106  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||| | ||||||||  | |||  | |||||||| |||||| |||||||||||||||    
T  13517878 gtttagagagcggcggctagggtttcacaacttttgtgaattaggtttagcactcacattaagttagtcatgcttcaacacaagggttctatttatagaa 13517779  T
Q  107 tcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctat--ttttcgtaaattaaataataa 192  Q
      |||||||  |||||||| ||||||||||  |||| |||||||||||||| |||||||||||||||  |||||||||||||||||||||    
T  13517778 atacttgtgtggtcagcaaaacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttttcgtaaattaaataataa 13517689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 421 - 660
Target Start/End: Complemental strand, 18550221 - 18549981
Alignment:
Q  421 gatcatgtaataaacat---aatcaaaataattgaatacaattttactaacttgtcatcctttaaataattttattatatttttaacctttcatgagagt 517  Q
    |||||||||||||||||   |||||||||| || |||||||||||||||||||||| ||||||||| || || ||| | |||||||||||  |  |||||    
T  18550221 gatcatgtaataaacatgataatcaaaatatttaaatacaattttactaacttgtcttcctttaaaaaaatt-attttttttttaaccttcgacaagagt 18550123  T
Q  518 aaagtgaataaatatatatttatataccactataaagttatgtacaaatataaatcaccgttggatatttatgaacaagtagaacatatgttatgaacaa 617  Q
    |||| ||| || ||||||||||||  |||  |||||||||||||  |||||||  |||  ||| ||||||||||| ||||||||  |||||||||| |||    
T  18550122 aaagggaa-aagtatatatttata--ccatcataaagttatgtatgaatataacacacgattgaatatttatgaataagtagaatgtatgttatgagcaa 18550026  T
Q  618 tctatttttt-attaaatcatt-ggatcataaataatttatattt 660  Q
    |||||||||| |||||||||||  ||||||||| |||||||||||    
T  18550025 tctattttttaattaaatcattaagatcataaagaatttatattt 18549981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 73 - 192
Target Start/End: Complemental strand, 13212331 - 13212210
Alignment:
Q  73 ataatgcttcagcacaagagttctatttatagaatcacttgtggt--cagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctcta 170  Q
    ||||||||||| |||||| ||||||||||||||||||||||||    || ||||||||||||||  |||| |||||||||||||| ||||||||||||||    
T  13212331 ataatgcttcaacacaagggttctatttatagaatcacttgtgtgaacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctcta 13212232  T
Q  171 tttttcgtaaattaaataataa 192  Q
    ||||||||||||||||||||||    
T  13212231 tttttcgtaaattaaataataa 13212210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 74 - 192
Target Start/End: Original strand, 23014548 - 23014668
Alignment:
Q  74 taatgcttcagcacaagagttctatttatagaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctat 171  Q
    ||||||||||||||||| ||||||||||||||| ||||||||  ||||||||   | ||||||  |||||| |||||||| ||  || ||||||||||||    
T  23014548 taatgcttcagcacaagggttctatttatagaaccacttgtgtggtcagcaaccaaccacttaaatacatcataccttacagtagactgcgtttctctat 23014647  T
Q  172 ttttcgtaaattaaataataa 192  Q
    |||||||||||||||||||||    
T  23014648 ttttcgtaaattaaataataa 23014668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 16201288 - 16201180
Alignment:
Q  8 tttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacac-tcacaaaaggttcataatgcttcagcacaagagttctatttatagaa 106  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||| ||| |||  ||| ||  ||||| |||||||||||| |||| ||||||||||    
T  16201288 tttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcacttcaacaaaagtctataatacttcagcacaagggttcaatttatagaa 16201189  T
Q  107 tcacttgtg 115  Q
    |||||||||    
T  16201188 tcacttgtg 16201180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 423 - 501
Target Start/End: Complemental strand, 18535957 - 18535876
Alignment:
Q  423 tcatgtaataaacataatca---aaataattgaatacaattttactaacttgtcatcctttaaataattttattatattttt 501  Q
    |||||||||||||||||| |   ||||||||||||| ||||||| ||||||||||||||||||||| ||||||||| |||||    
T  18535957 tcatgtaataaacataataataaaaataattgaatataattttaataacttgtcatcctttaaatatttttattattttttt 18535876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 759 - 796
Target Start/End: Complemental strand, 6031240 - 6031203
Alignment:
Q  759 tttaacaagtgtactaaaaattatcgaagcaataaaat 796  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  6031240 tttaacaagtgtactaaaaattatcgaagtaataaaat 6031203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 13212369 - 13212331
Alignment:
Q  7 gtttagagagcgacggctaggatttcacaacttttgtga 45  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  13212369 gtttagagagcggcggctagggtttcacaacttttgtga 13212331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 750 - 796
Target Start/End: Original strand, 32287067 - 32287112
Alignment:
Q  750 tgatagacttttaacaagtgtactaaaaattatcgaagcaataaaat 796  Q
    |||||||||||||||||||||||| |||| |||||||| ||||||||    
T  32287067 tgatagacttttaacaagtgtact-aaaactatcgaagtaataaaat 32287112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 748 - 797
Target Start/End: Complemental strand, 4250749 - 4250701
Alignment:
Q  748 attgatagacttttaacaagtgtactaaaaattatcgaagcaataaaata 797  Q
    ||||||||||||||| |||||||||| |||| |||||||| |||||||||    
T  4250749 attgatagacttttagcaagtgtact-aaaactatcgaagtaataaaata 4250701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 797
Target Start/End: Original strand, 52309377 - 52309422
Alignment:
Q  753 tagacttttaacaagtgtactaaaaat-tatcgaagcaataaaata 797  Q
    |||||||||| |||||||||||||||| |||||||| |||||||||    
T  52309377 tagacttttagcaagtgtactaaaaatgtatcgaagtaataaaata 52309422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 431; Significance: 0; HSPs: 6)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 197 - 794
Target Start/End: Original strand, 2856 - 3453
Alignment:
Q  197 tctttaaaaacatgcacaaataaatatatcttttt-atttcaattcnnnnnnn-cagtataaatacgttgtttaggttataatggatcttaggtaaaagg 294  Q
    ||||||||||||||||||||||||||||| ||||| |||| ||||         || ||||||| ||||||||||||||||||||| |||||||||||||    
T  2856 tctttaaaaacatgcacaaataaatatatattttttattttaattaaaaaaaaacactataaatgcgttgtttaggttataatggagcttaggtaaaagg 2955  T
Q  295 tggaataattcgaaaagtaggtttcacaaaataattggacgtaagcatcttcttactggtctaacaaaacattcctacaccacatgttaacttaagggac 394  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  2956 tggaataattcgaaaagtaggtttcacaaaaaaattggaggtaagcatcttc---ctggtctaacaaaacattcctacaccacatgttaacttaagggac 3052  T
Q  395 tagagaattgacattacatgacaattgatcatgtaataaacataat---caaaataattgaatacaattttactaacttgtcatcctttaaataatttta 491  Q
    |||||||||||||||| |||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3053 tagagaattgacattatatgacaattgatcatgtaataaacataataatcaaaataattgaatacaattttactaacttgtcatcctttaaataatttta 3152  T
Q  492 ttatatttttaacctttcatgagagtaaagtgaataaatatatatttatataccactataaagttatgtacaaatataaatcaccgttggatatttatga 591  Q
    || ||||||||||||||||| ||||||||||||||||||||  ||||||||| ||  ||||||||||||||||||||||||||| |||||||| ||||||    
T  3153 ttttatttttaacctttcatcagagtaaagtgaataaatat--atttatatatcagcataaagttatgtacaaatataaatcactgttggatacttatga 3250  T
Q  592 acaagtagaacatatgttatgaacaatctattttttattaaatcattggatcataaataatttatatttgaaaaatttgattgcattatttattccattt 691  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||    
T  3251 acaagtagaacatatgttatgaccaatctattttttattaaatcattggatcataaataatttatatttaaaaaatttgattgcattatttattcctttt 3350  T
Q  692 tcttattcacatcaattgtatgaatcaattatataacattggctcctttcttatatattgatagacttttaacaagtgtactaaaaattatcgaagcaat 791  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| || | ||||||||    
T  3351 tcttattcacatcaattgtatgaatcaattatataacattggcccctttcttatatattgatagacttttaacaagtgcactaaaattttttgaagcaat 3450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 608 - 794
Target Start/End: Original strand, 14703 - 14892
Alignment:
Q  608 ttatgaacaatcta---ttttttattaaatcattggatcataaataatttatatttgaaaaatttgattgcattatttattccattttcttattcacatc 704  Q
    ||||||||||||||   ||||||||||||||||||||||||||| ||||||||||| || ||||| ||||||| |||||||| | ||||||||| |||||    
T  14703 ttatgaacaatctaactttttttattaaatcattggatcataaagaatttatatttaaacaatttcattgcataatttattcaactttcttattgacatc 14802  T
Q  705 aattgtatgaatcaattatataacattggctcctttcttatatattgatagacttttaacaagtgtactaaaaattatcgaagcaataaa 794  Q
    ||||||||||||||| |||||| ||||||| |||||||| ||||||||||| |||||| |||||||| || ||| || | ||||||||||    
T  14803 aattgtatgaatcaaatatataccattggcccctttcttgtatattgataggcttttagcaagtgtattataaactaccaaagcaataaa 14892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 423 - 505
Target Start/End: Original strand, 4783 - 4868
Alignment:
Q  423 tcatgtaataaacataatca---aaataattgaatacaattttactaacttgtcatcctttaaataattttattatatttttaacc 505  Q
    |||||||||||||||||| |   ||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  4783 tcatgtaataaacataataataaaaataattgaatataattttaataacttgtcatcctttaaataattttattatttttttaacc 4868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 454 - 595
Target Start/End: Original strand, 14574 - 14712
Alignment:
Q  454 tacaattttactaacttgtcatcctttaaataattttattatatttttaacctttcatgagagtaaagtgaataaatatatatttatataccactataaa 553  Q
    ||||| ||||||||||||||||| |||||||| |||| || | |||||| |||||||||||||||||||||| ||||| || |||||||  ||  |||||    
T  14574 tacaactttactaacttgtcatcatttaaatatttttttttttttttta-cctttcatgagagtaaagtgaaaaaatacatttttatat--catcataaa 14670  T
Q  554 gttatgtacaaatataaatcaccgttggatatttatgaacaa 595  Q
    |||| |||  |||||||| |||| || |||||||||||||||    
T  14671 gttacgtaggaatataaagcacccttagatatttatgaacaa 14712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 424 - 505
Target Start/End: Original strand, 9024 - 9108
Alignment:
Q  424 catgtaataaacataa---tcaaaataattgaatacaattttactaacttgtcatcctttaaataattttattatatttttaacc 505  Q
    ||||||||||||||||   ||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| || ||||||    
T  9024 catgtaataaacataataatcaaaataattgaatacaactttactaagttgtcatcctttaaatagttttattattttcttaacc 9108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 436 - 505
Target Start/End: Original strand, 13401 - 13470
Alignment:
Q  436 ataatcaaaataattgaatacaattttactaacttgtcatcctttaaataattttattatatttttaacc 505  Q
    |||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||| || ||||||    
T  13401 ataatcaaaataattgaatataattttactaacttgttatcttttaaataattttattattttcttaacc 13470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 4e-68; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 4 - 192
Target Start/End: Complemental strand, 6095218 - 6095028
Alignment:
Q  4 aaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttata 103  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| ||||||||||||    
T  6095218 aaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctatttata 6095119  T
Q  104 gaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    ||||||||  |||||||||||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6095118 gaatcacttgtgtggtcagcaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 6095028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 21941740 - 21941547
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaa--ggttcataatgcttcagcacaagagttctattt 100  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||  ||||  |||||||||| |||||| |||||||||    
T  21941740 caaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagggttagtaatgcttcaacacaagggttctattt 21941641  T
Q  101 atagaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||||||||  | || ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21941640 atagaatcacttgtgtggacaacaagacaacacttaaatacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 21941547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 22172558 - 22172367
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||| ||  |||||||||| |||||| |||||||||||    
T  22172558 caaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaagattagtaatgcttcaacacaagggttctatttat 22172459  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||  ||||| || ||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22172458 agaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 22172367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 15327296 - 15327105
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||| ||||||||||| | |||||| ||||||||||||||||||||||||||| |||||||||||||||  |||||||||| |||||  |||||||||||    
T  15327296 caagttttagagagcggcagctagggtttcacaacttttgtgaattaggttaagcactcacaaaaggttagtaatgcttcaacacaaaggttctatttat 15327197  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||  |||||||||||||||||||||||  |||| |||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  15327196 agaatcacttgtgtggtcagcaagacaacacttaaatacaccgtaccttacggtagaccgcgtttctctatttttcgtaaattaaataataa 15327105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 15507665 - 15507474
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||| ||||||||||| | |||||| ||||||||||||||||||||||||||| |||||||||||||||  |||||||||| |||||  |||||||||||    
T  15507665 caagttttagagagcggcagctagggtttcacaacttttgtgaattaggttaagcactcacaaaaggttagtaatgcttcaacacaaaggttctatttat 15507566  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||  |||||||||||||||||||||||  |||| |||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  15507565 agaatcacttgtgtggtcagcaagacaacacttaaatacaccgtaccttacggtagaccgcgtttctctatttttcgtaaattaaataataa 15507474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 5 - 192
Target Start/End: Complemental strand, 28549119 - 28548929
Alignment:
Q  5 aggtttagagagcgacggctaggatttcacaactttt-gtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttata 103  Q
    |||||||||||||| |||||||| ||||||||||||| |||||||||||||| ||||||||||| |||  | |||||||| |||||| ||||||||||||    
T  28549119 aggtttagagagcggcggctagggtttcacaactttttgtgaattaggttaagcactcacaaaatgttagtcatgcttcaacacaagggttctatttata 28549020  T
Q  104 gaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    ||||||||| ||  |||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  28549019 gaatcacttatgtagtcagcaagacaacacttaaatacatcgtaccttacggtggaccgcgtttctctatttttcgtaaatcaaataataa 28548929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 192
Target Start/End: Complemental strand, 24643624 - 24643504
Alignment:
Q  75 aatgcttcagcacaagagttctatttatagaatcact--tgtggtcagcaagacaa-cacttagctacatcgtaccttacggtgaaccgcgtttctctat 171  Q
    |||||||||||| ||| ||||||||||||||| ||||  |||| ||| |||| ||| ||||||  |||| ||||| |||||||| ||| | || ||||||    
T  24643624 aatgcttcagcataagggttctatttatagaaccacttgtgtgatcaacaagccaatcacttaaatacaccgtactttacggtggacctcattactctat 24643525  T
Q  172 ttttcgtaaattaaataataa 192  Q
    ||||| |||||||||||||||    
T  24643524 ttttcttaaattaaataataa 24643504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 749 - 793
Target Start/End: Complemental strand, 14349357 - 14349312
Alignment:
Q  749 ttgatagacttttaacaagtgtactaaaaat-tatcgaagcaataa 793  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||    
T  14349357 ttgatagacttttaacaagtgtactaaaaatgtatcgaagtaataa 14349312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 29230487 - 29230378
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacac--tcacaaaaggttca-taatgcttcagcacaagagttctatt 99  Q
    |||||||||  ||||| |||||||| ||||||||||||||| | ||||||||| |||  | |||||||  ||| |||||||||| |||    ||||||||    
T  29230487 caaggtttaaggagcggcggctagggtttcacaacttttgttagttaggttaagcactttaacaaaag--tcagtaatgcttcatcac----gttctatt 29230394  T
Q  100 tatagaatcacttgtg 115  Q
    ||||||||||||||||    
T  29230393 tatagaatcacttgtg 29230378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 750 - 796
Target Start/End: Complemental strand, 44008539 - 44008492
Alignment:
Q  750 tgatagacttttaacaagtgtactaaaaat-tatcgaagcaataaaat 796  Q
    |||||||||||||||||||||||||||||| |||| ||| ||||||||    
T  44008539 tgatagacttttaacaagtgtactaaaaatatatcaaagtaataaaat 44008492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 749 - 797
Target Start/End: Complemental strand, 12583376 - 12583327
Alignment:
Q  749 ttgatagacttttaacaagtgtactaaaaat-tatcgaagcaataaaata 797  Q
    |||||||||||||| |||||||||||||||| |||||||  |||||||||    
T  12583376 ttgatagacttttagcaagtgtactaaaaatgtatcgaaataataaaata 12583327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 129; Significance: 2e-66; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 4 - 192
Target Start/End: Original strand, 18531648 - 18531839
Alignment:
Q  4 aaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaa-ggttcataatgcttcagcacaagagttctatttat 102  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||| |||||| |||||||||||    
T  18531648 aaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaaggttcgtaatgcttcaacacaagggttctatttat 18531747  T
Q  103 agaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||||||  |||||||||||||||||||  ||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18531748 agaatcacttgtgtggtcagcaagacaacacttaaatacactgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 18531839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 18253103 - 18252912
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| |||||||||||    
T  18253103 caaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctatttat 18253004  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||  ||||| || ||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18253003 agaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 18252912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 27130518 - 27130711
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||||||||||| |||| |||||| |||  |||||||||| |||||| |||||||||||    
T  27130518 caaggtttagagagcggaggctagggtttcacaacttttgtgaattaggttaagcacttacaaaaagttagtaatgcttcaacacaagggttctatttat 27130617  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataatg 194  Q
    |||||||||  |||||||||||||||||||||||  |||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  27130618 agaatcacttgtgtggtcagcaagacaacacttaaatacaccgtaccttacggtagaccgcgtttctctatttttcgtaaattaaataataatg 27130711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 27309687 - 27309877
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||||| ||||||||||||||| ||||||||||| ||||||||||| |||  |||||||||| |||||| |||||||||||    
T  27309687 caaggtttagagagcggcggctagggtttcacaacttttgttaattaggttaagcactcacaaaaagttagtaatgcttcaacacaag-gttctatttat 27309785  T
Q  103 agaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||||||  || ||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  27309786 agaatcacttgtgtggttagcaagacaacacttaaatacatcgtaccttacggtggaccgcgtttctctatttttcataaattaaataataa 27309877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 7 - 192
Target Start/End: Original strand, 16358173 - 16358360
Alignment:
Q  7 gtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttatagaa 106  Q
    |||||||||||||| |||| | ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| |||||||||||||||    
T  16358173 gtttagagagcgacagctatggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctatttatagaa 16358272  T
Q  107 tcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    ||| |  |||||||||||||||||||||||  ||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  16358273 tcatttgtgtggtcagcaagacaacacttaaatacattgtaccttacggtggaccgcgtttccctatttttcgtaaattaaataataa 16358360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 9076013 - 9076202
Alignment:
Q  5 aggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttatag 104  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| |||||||||||||    
T  9076013 aggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctatttatag 9076112  T
Q  105 aatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    ||||  |  |||||||||||||||||||||||  |||| | |||||||||||| | |||||||||||||||||| |||||||||||||||    
T  9076113 aatcgtttgtgtggtcagcaagacaacacttaaatacagcataccttacggtggatcgcgtttctctatttttcataaattaaataataa 9076202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 36815748 - 36815843
Alignment:
Q  20 cggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttatagaatcacttgtg 115  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||| | ||   | |||||||| |||||| ||||||||||||||||||||||||    
T  36815748 cggctagggtttcacaacttttgtgaattaggttaagcactcacaagaagtctgtcatgcttcaacacaagggttctatttatagaatcacttgtg 36815843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 36815911 - 36815960
Alignment:
Q  143 gtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||| |||| ||||| ||||||||||||||||||||||||||||||    
T  36815911 gtaccttatggtggaccgcatttctctatttttcgtaaattaaataataa 36815960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 750 - 796
Target Start/End: Original strand, 3087499 - 3087545
Alignment:
Q  750 tgatagacttttaacaagtgtactaaaaattatcgaagcaataaaat 796  Q
    ||||||||||||||||||||||||||||  |||||||| ||||||||    
T  3087499 tgatagacttttaacaagtgtactaaaatatatcgaagtaataaaat 3087545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 749 - 798
Target Start/End: Original strand, 21110912 - 21110962
Alignment:
Q  749 ttgatagacttttaacaagtgtactaaaaat-tatcgaagcaataaaatat 798  Q
    |||||||||||||| ||||||||||||||||  ||||||| ||||||||||    
T  21110912 ttgatagacttttagcaagtgtactaaaaatgcatcgaagtaataaaatat 21110962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 4e-65; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 3 - 190
Target Start/End: Original strand, 10620442 - 10620631
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||| ||   |||||||||| |||||| |||||||||||    
T  10620442 caaggtttagagagcgacggctagggtttcacaacttttgtgaattaggtcaagcactcacaaaaagtcagtaatgcttcaacacaagggttctatttat 10620541  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataat 190  Q
    |||||||||  |||||||||||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10620542 agaatcacttgtgtggtcagcaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataat 10620631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 3 - 190
Target Start/End: Original strand, 10627524 - 10627713
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||| ||   |||||||||| |||||| |||||||||||    
T  10627524 caaggtttagagagcgacggctagggtttcacaacttttgtgaattaggtcaagcactcacaaaaagtcagtaatgcttcaacacaagggttctatttat 10627623  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataat 190  Q
    |||||||||  |||||||||||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10627624 agaatcacttgtgtggtcagcaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataat 10627713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 4425749 - 4425940
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| |||||| |||  |||||||||| |||||| |||||||||||    
T  4425749 caaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcacttacaaaaagttagtaatgcttcaacacaagggttctatttat 4425848  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||  |||||||||||||||||||||||  |||| |||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  4425849 agaatcacttgtgtggtcagcaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcataaattaaataataa 4425940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 7 - 192
Target Start/End: Complemental strand, 8846272 - 8846085
Alignment:
Q  7 gtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttatagaa 106  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  ||||||||||  ||||| |||||||||||||||    
T  8846272 gtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaatacaagggttctatttatagaa 8846173  T
Q  107 tcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||  |||||||||||||||||||||||  |||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  8846172 tcacttgtgtggtcagcaagacaacacttaaatacatcgtaccttacgttggaccgcgtttctctatttttcgtaaattaaataataa 8846085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 8859265 - 8859074
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| |||||||||||    
T  8859265 caaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctatttat 8859166  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||  ||||| || ||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8859165 agaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 8859074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 4 - 192
Target Start/End: Original strand, 28392277 - 28392467
Alignment:
Q  4 aaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttata 103  Q
    |||||||| |||||| | |||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| ||||||||||||    
T  28392277 aaggtttaaagagcggcagctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctatttata 28392376  T
Q  104 gaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    ||||||||  |||||||||||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28392377 gaatcacttgtgtggtcagcaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 28392467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 4 - 192
Target Start/End: Original strand, 19919641 - 19919831
Alignment:
Q  4 aaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttata 103  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| | |  |||||||||| |||||| ||||||||||||    
T  19919641 aaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaaggtagtaatgcttcaacacaagggttctatttata 19919740  T
Q  104 gaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    ||||||||  ||||| || ||||||||||||||  |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19919741 gaatcacttgtgtggacaacaagacaacacttaaatacaccgtatcttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 19919831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 4 - 192
Target Start/End: Original strand, 19925870 - 19926060
Alignment:
Q  4 aaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttata 103  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| | |  |||||||||| |||||| ||||||||||||    
T  19925870 aaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaaggtagtaatgcttcaacacaagggttctatttata 19925969  T
Q  104 gaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    ||||||||  ||||| || ||||||||||||||  |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19925970 gaatcacttgtgtggacaacaagacaacacttaaatacaccgtatcttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 19926060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 7 - 189
Target Start/End: Complemental strand, 869690 - 869506
Alignment:
Q  7 gtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttatagaa 106  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||  ||||| |||| |||||| |||||||||||||||    
T  869690 gtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaggttagtaatgtttcaacacaagggttctatttatagaa 869591  T
Q  107 tcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataa 189  Q
    |||||  ||||| || ||||||||||||||  |||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  869590 tcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataa 869506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 436 - 762
Target Start/End: Complemental strand, 5674955 - 5674623
Alignment:
Q  436 ataatcaaaataattgaatacaattttactaacttgt-catcctttaaataattttattatattttta------acctttcatgagagtaaagtgaataa 528  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||   |||||       ||||||||||||||||||||||| ||    
T  5674955 ataatcaaaataattaaatacaattttactaacttgtacatcctttaaataattttatttctttttttttttgtacctttcatgagagtaaagtgaaaaa 5674856  T
Q  529 atatatatttatataccactataaagttatgtacaaatataaatcaccgttggatatttatgaacaagtagaacatatgttatgaacaatctatttttt- 627  Q
    ||||||  || ||||| |  ||||||||| |||   ||||||| |||| || |||||||| ||||||||| ||  |||||||||| |||| ||||||||     
T  5674855 atatat--ttgtatacgatcataaagttacgta---atataaagcaccctttgatatttaggaacaagtaaaatgtatgttatgagcaatatattttttt 5674761  T
Q  628 attaaatcattggatcataaat-aatttatatttgaaaaatttgattgcattatttattccattttcttattcacatca-attgtatgaatcaattatat 725  Q
    ||||||||||||||||| |||  ||||||||||| || ||||| || |||| |||||||| | ||||||||||||||||  |||||||||||||||||||    
T  5674760 attaaatcattggatcaaaaaagaatttatatttaaacaatttcatagcataatttattctactttcttattcacatcattttgtatgaatcaattatat 5674661  T
Q  726 aa-cattggctcctttcttatatattgatagactttta 762  Q
    || ||||||| ||  |||||||||||||||||||||||    
T  5674660 aatcattggcccccgtcttatatattgatagactttta 5674623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 7 - 192
Target Start/End: Complemental strand, 5708406 - 5708219
Alignment:
Q  7 gtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttatagaa 106  Q
    |||||||||||  |||||||| ||||||||||||||||||||||||||| |||||||||||||||  ||||| |||| |||||| |||||||||||||||    
T  5708406 gtttagagagcagcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaggttagtaatgtttcaacacaagggttctatttatagaa 5708307  T
Q  107 tcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||  ||||| || ||||||||||||||  ||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5708306 tcacttgtgtggacaacaagacaacacttaaatacactgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 5708219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 7 - 192
Target Start/End: Complemental strand, 5715042 - 5714854
Alignment:
Q  7 gtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactca-caaaaggttcataatgcttcagcacaagagttctatttataga 105  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||| |||||| |||||||||  ||||| |||| |||||| ||||||||||||||    
T  5715042 gtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcaacaaaaggttagtaatgtttcaacacaagggttctatttataga 5714943  T
Q  106 atcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    ||||||||||  | || ||||||||||||||  ||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5714942 atcacttgtgtggacaacaagacaacacttaaatacactgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 5714854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 475 - 794
Target Start/End: Original strand, 9287654 - 9287966
Alignment:
Q  475 tcctttaaataattttattatatttttaacctttcatgagagtaaagtgaataaatatatatttatataccactataaagttatgtacaaatataaatca 574  Q
    |||||||||||||| |||||| ||||||||||||  |||||||||||  || |||          |||||||  |||||||||||||| |||||||| ||    
T  9287654 tcctttaaataattgtattatgtttttaaccttttgtgagagtaaaggaaaaaaag---------tataccatcataaagttatgtacgaatataaagca 9287744  T
Q  575 ccgttggatatttatgaacaagtagaacatatgttatgaacaatctatttttt-attaaatcattggatcataaataatttatatttgaaaaatttgatt 673  Q
    || || ||||||||||||||||||  |||||||||||||  |||||||||||| ||||||||||| ||||||||| | || |||||| |||||||| |||    
T  9287745 ccattagatatttatgaacaagtaagacatatgttatgagaaatctattttttgattaaatcatttgatcataaagatttaatatttaaaaaatttcatt 9287844  T
Q  674 gcattatttattccattttcttattcacatcaattgtatgaatcaattatataa-cattggctcctttcttatatattgatagacttttaacaagtgtac 772  Q
      || |||||||||| ||||||||||||||||||| |||||||||||||||||| || |||  ||  |||| ||||  ||||||||||||| ||||||||    
T  9287845 ttataatttattccactttcttattcacatcaattatatgaatcaattatataatcaatggaccccctcttgtataacgatagacttttaataagtgtac 9287944  T
Q  773 taaaaattatcgaagcaataaa 794  Q
    ||||  ||||||||| ||||||    
T  9287945 taaaggttatcgaagtaataaa 9287966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 18270146 - 18269955
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  | ||| |||| |||||| |||||||||||    
T  18270146 caaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtcatgtttcaacacaagggttctatttat 18270047  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||  ||||| || ||||||||||||||  |||| |||||||||||||| |||||||||||||||||||||||| ||||| |||||    
T  18270046 agaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaagttaaacaataa 18269955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 55613781 - 55613590
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||  | ||||||||||||||||||||||||||| ||||||||||| ||   |||||||||| |||||| |||||||||||    
T  55613781 caaggtttagagagcggcggctgag-tttcacaacttttgtgaattaggttaagcactcacaaaaagtaagtaatgcttcaacacaagggttctatttat 55613683  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctc-tatttttcgtaaattaaataataa 192  Q
    |||||||||  ||||| || ||||||||||||||  |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  55613682 agaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtgaaccgcgtttctcttatttttcgtaaattaaataataa 55613590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 18263285 - 18263094
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  | ||| |||| |||||| |||||||||||    
T  18263285 caaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtcatgtttcaacacaagggttctatttat 18263186  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||  ||||| || ||||||||||||||  ||||  ||||||||||||| |||||||||||||||||||||||| ||||| |||||    
T  18263185 agaatcacttgtgtggacaacaagacaacacttaaatacactgtaccttacggtggaccgcgtttctctatttttcgtaagttaaacaataa 18263094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 26971538 - 26971345
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  ||||| |||| |||||| |||||||||||    
T  26971538 caaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgtttcaacacaagggttctatttat 26971439  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcg-tttctcta-tttttcgtaaattaaataataa 192  Q
    |||||||||  ||||| || ||||||||||||||  |||| |||||||||||||| |||||| |||||||| |||||| |||||||||||||||    
T  26971438 agaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgttttctctattttttcctaaattaaataataa 26971345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 3 - 152
Target Start/End: Original strand, 5667202 - 5667354
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||||| ||||||||||||||||||| ||||||| |||||||||||  |   ||||||||||||||||| |||||||||||    
T  5667202 caaggtttagagagcggcggctagggtttcacaacttttgtgaataaggttaagcactcacaaaaaatatgtaatgcttcagcacaagggttctatttat 5667301  T
Q  103 agaatcact--tgtggtcagcaagacaa-cacttagctacatcgtaccttacg 152  Q
    |||||||||  ||||||||||||| ||| ||||||  |||| |||||||||||    
T  5667302 agaatcacttgtgtggtcagcaagccaagcacttaagtacaccgtaccttacg 5667354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 421 - 665
Target Start/End: Original strand, 5615961 - 5616202
Alignment:
Q  421 gatcatgtaataaacataat---caaaataattgaatacaattttactaacttgtcat--------cctttaaataattttattatatttttaacctttc 509  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||||||| ||||        |||||| ||||||||        |||||||||||    
T  5615961 gatcatgtaataaacataataatcaaaataattgaatacaattttactaacttctcattaagttttcctttagataatttt--------tttaacctttc 5616052  T
Q  510 atgagagtaaagtgaataaatatatatttatataccactataaagttatgtacaaatataaatcaccgttggatatttatgaacaagtagaacatatgtt 609  Q
    ||||| |||||| ||| ||||||       |||  ||  |||||||| ||||| |||||||| |||| ||||||||||||||| ||||| ||| |||||     
T  5616053 atgagtgtaaagggaaaaaatat-------tatgtcatcataaagttgtgtacgaatataaaacaccattggatatttatgaaaaagtataacgtatgtc 5616145  T
Q  610 atgaacaatctatttttt-attaaatcattggatcataaataatttatatttgaaaa 665  Q
    || | | ||||||||||| ||||||||||||||||||||| ||| ||||||| ||||    
T  5616146 ataagcgatctattttttgattaaatcattggatcataaagaatgtatatttaaaaa 5616202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 436 - 495
Target Start/End: Complemental strand, 5685708 - 5685649
Alignment:
Q  436 ataatcaaaataattgaatacaattttactaacttgtcatcctttaaataattttattat 495  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5685708 ataatcaaaataattgaataaaattttactaacttgtcatcctttaaataattttattat 5685649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 26964644 - 26964592
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaa 55  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  26964644 caaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaa 26964592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 47388065 - 47388176
Alignment:
Q  4 aaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttata 103  Q
    ||||||||||||| | |||||||| ||||||  ||||||||||||||||||| ||||||  ||| ||   ||||| ||||||||||  |||||||||||     
T  47388065 aaggtttagagagtggcggctagggtttcacgccttttgtgaattaggttaagcactcaacaaaagtcagtaatgtttcagcacaatggttctatttatc 47388164  T
Q  104 gaatcacttgtg 115  Q
     |||||||||||    
T  47388165 aaatcacttgtg 47388176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 5667385 - 5667430
Alignment:
Q  147 cttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  5667385 cttacggtggaccgcgtttctctatttttcgtaaattaaataataa 5667430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 740 - 794
Target Start/End: Complemental strand, 5694041 - 5693987
Alignment:
Q  740 tcttatatattgatagacttttaacaagtgtactaaaaattatcgaagcaataaa 794  Q
    |||| |||||| ||||||||||| ||||||||||||||||||||||| |||||||    
T  5694041 tcttttatattaatagacttttagcaagtgtactaaaaattatcgaaacaataaa 5693987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 10676851 - 10676905
Alignment:
Q  138 acatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||| ||||||||||||| ||||| |||||||||||||| |||||||||||||||    
T  10676851 acattgtaccttacggtggaccgcatttctctatttttcataaattaaataataa 10676905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 10890491 - 10890545
Alignment:
Q  138 acatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||| ||||||||||||| ||||| |||||||||||||| |||||||||||||||    
T  10890491 acattgtaccttacggtggaccgcatttctctatttttcataaattaaataataa 10890545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 35224553 - 35224456
Alignment:
Q  80 ttcagcacaagagttctatttatagaatcacttgtgg--tcagcaagacaa-cacttagctacatcgtaccttacggtgaaccgcgtttctctatttt 174  Q
    ||||||||||| ||||||||||||||| ||||||||   |||  ||| ||| ||||||  |||| |||||||||||||| ||||||||||||||||||    
T  35224553 ttcagcacaagggttctatttatagaaccacttgtgtgctcataaagtcaagcacttaagtacaccgtaccttacggtggaccgcgtttctctatttt 35224456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 438 - 483
Target Start/End: Complemental strand, 5691895 - 5691850
Alignment:
Q  438 aatcaaaataattgaatacaattttactaacttgtcatcctttaaa 483  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  5691895 aatcaaaataattgaatacaattctactaccttgtcatcctttaaa 5691850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 550 - 612
Target Start/End: Original strand, 9196482 - 9196544
Alignment:
Q  550 taaagttatgtacaaatataaatcaccgttggatatttatgaacaagtagaacatatgttatg 612  Q
    ||||||||||||| |||||||| |||  ||  |||||||| ||||||||||||||||||||||    
T  9196482 taaagttatgtacgaatataaagcacaattaaatatttataaacaagtagaacatatgttatg 9196544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 47388244 - 47388294
Alignment:
Q  143 gtaccttacggtgaaccgcgttt-ctctatttttcgtaaattaaataataa 192  Q
    ||||||||||||| ||||||||| |||||||||| ||||||||||||||||    
T  47388244 gtaccttacggtggaccgcgttttctctattttttgtaaattaaataataa 47388294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 750 - 798
Target Start/End: Original strand, 26156556 - 26156604
Alignment:
Q  750 tgatagacttttaacaagtgtactaaaaattatcgaagcaataaaatat 798  Q
    |||||||||||||| || ||||||||||||||| |||| ||||||||||    
T  26156556 tgatagacttttaataaatgtactaaaaattattgaagtaataaaatat 26156604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 795
Target Start/End: Complemental strand, 26060861 - 26060814
Alignment:
Q  749 ttgatagacttttaacaagtgtactaaaaat-tatcgaagcaataaaa 795  Q
    |||||||||||||| |||||||||||||||| |||||||| |||||||    
T  26060861 ttgatagacttttagcaagtgtactaaaaatgtatcgaagtaataaaa 26060814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 764 - 794
Target Start/End: Complemental strand, 5687133 - 5687103
Alignment:
Q  764 caagtgtactaaaaattatcgaagcaataaa 794  Q
    |||||||||||||||||||||||||||||||    
T  5687133 caagtgtactaaaaattatcgaagcaataaa 5687103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 540 - 602
Target Start/End: Original strand, 9276831 - 9276893
Alignment:
Q  540 tataccactataaagttatgtacaaatataaatcaccgttggatatttatgaacaagtagaac 602  Q
    |||||||  |||||||||||||  |||||||| |||| ||| |||||||||| ||||||||||    
T  9276831 tataccatcataaagttatgtatgaatataaagcaccattgtatatttatgatcaagtagaac 9276893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 750 - 795
Target Start/End: Complemental strand, 5820857 - 5820813
Alignment:
Q  750 tgatagacttttaacaagtgtactaaaaattatcgaagcaataaaa 795  Q
    ||||||| |||||||||||||||| ||||||||||||| |||||||    
T  5820857 tgatagatttttaacaagtgtact-aaaattatcgaagtaataaaa 5820813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 749 - 797
Target Start/End: Complemental strand, 19821072 - 19821023
Alignment:
Q  749 ttgatagacttttaacaagtgtactaaaaat-tatcgaagcaataaaata 797  Q
    |||||| ||||||| |||||||||||||||| |||||||| |||||||||    
T  19821072 ttgatatacttttagcaagtgtactaaaaatgtatcgaagtaataaaata 19821023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 125; Significance: 6e-64; HSPs: 2)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 6043 - 6234
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| |||||||||||    
T  6043 caaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctatttat 6142  T
Q  103 agaatcacttg--tggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||||  ||| || ||||||||||||||  |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6143 agaatcacttgtatggacaacaagacaacacttaaatacaccgtaccttacggtgaaccgcgtttctctatttttggtaaattaaataataa 6234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 13059 - 13250
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||||| |||||||||| |||||||||||||||| ||||||||||| |||  |||||||||| |||||| |||||||||||    
T  13059 caaggtttagagagcggcggctagggtttcacaactgttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctatttat 13158  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||  ||||| || ||||||||||||||  |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13159 agaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtgaaccgcgtttctctatttttggtaaattaaataataa 13250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 125; Significance: 6e-64; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 5330 - 5521
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| |||||||||||    
T  5330 caaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctatttat 5429  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||  ||||| || ||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5430 agaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 5521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 6e-64; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 17690574 - 17690765
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| |||||||||||    
T  17690574 caaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctatttat 17690673  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||  ||||| || ||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17690674 agaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 17690765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 27380361 - 27380552
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| ||||||| |||||| |||| |||||| |||||||||||    
T  27380361 caaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcaccaaaggttaataatgtttcaacacaagggttctatttat 27380460  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||  ||||| || ||||||||||||||  |||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  27380461 agaatcacttgtgtggacaacaagacaacacttaaatacaccgtactttacggtggaccgcgtttctctatttttcgtaaattaaataataa 27380552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 27470744 - 27470935
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| ||||||| |||||| |||| |||||| |||||||||||    
T  27470744 caaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcaccaaaggttaataatgtttcaacacaagggttctatttat 27470843  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||  ||||| || ||||||||||||||  |||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  27470844 agaatcacttgtgtggacaacaagacaacacttaaatacaccgtactttacggtggaccgcgtttctctatttttcgtaaattaaataataa 27470935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 29309963 - 29309772
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| ||| |||  |||||||||| |||||| |||||||||||    
T  29309963 caaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcaccaaaagttagtaatgcttcaacacaagggttctatttat 29309864  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||  ||||| || ||||||||||||||  |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29309863 agaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtgaaccgcatttctctatttttcgtaaattaaataataa 29309772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 29316922 - 29316731
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| ||| |||  |||||||||| |||||| |||||||||||    
T  29316922 caaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcaccaaaagttagtaatgcttcaacacaagggttctatttat 29316823  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||  ||||| || ||||||||||||||  |||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  29316822 agaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtgaatcgcatttctctatttttcgtaaattaaataataa 29316731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 4 - 192
Target Start/End: Complemental strand, 11652770 - 11652580
Alignment:
Q  4 aaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttata 103  Q
    ||||||||||||||| |  ||||| ||||||||||||||||||||||||| | || ||||||||  ||  |||||||||| |||||| ||||||||||||    
T  11652770 aaggtttagagagcggcatctagggtttcacaacttttgtgaattaggttcagcattcacaaaaaattagtaatgcttcaacacaagggttctatttata 11652671  T
Q  104 gaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    ||||||||||||  |||||||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11652670 gaatcacttgtgtggtcagcaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 11652580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 7 - 175
Target Start/End: Complemental strand, 27297728 - 27297558
Alignment:
Q  7 gtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttatagaa 106  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| |||||||||||||||    
T  27297728 gtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctatttatagaa 27297629  T
Q  107 tcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctattttt 175  Q
    |||||  ||||| || ||||||||||||||  |||| ||||||||||||||||||||||||||||||||||    
T  27297628 tcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtgaaccgcgtttctctattttt 27297558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 7 - 192
Target Start/End: Original strand, 17683595 - 17683782
Alignment:
Q  7 gtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaa-ggttcataatgcttcagcacaagagttctatttataga 105  Q
    ||||||||||||  | ||||| ||||||||||||||||||||| ||||| ||||||||||| ||||  |||||||||| |||||| ||||||||||||||    
T  17683595 gtttagagagcggtgactagggtttcacaacttttgtgaattaagttaagcactcacaaaaaggttagtaatgcttcaacacaagggttctatttataga 17683694  T
Q  106 atcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    ||||||||||  |||||||||||||||||||  ||||||||||||||||||| || ||||||||||| |||||||||||||||||||||    
T  17683695 atcacttgtgtggtcagcaagacaacacttaaatacatcgtaccttacggtggactgcgtttctcta-ttttcgtaaattaaataataa 17683782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 25536298 - 25536490
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| ||||| || ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| |||||||||||    
T  25536298 caaggtttagagagcggcggcttgggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctatttat 25536397  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctcta-tttttcgtaaattaaataataa 192  Q
    |||||||||  |||| |||| |||||||||||||  ||||  ||||||||||||  | |||||||||||| ||||||||||||||||||||||    
T  25536398 agaatcacttgtgtgatcagaaagacaacacttaaatacactgtaccttacggtcgatcgcgtttctctattttttcgtaaattaaataataa 25536490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 16558717 - 16558797
Alignment:
Q  112 tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||||||||||||||||  || | |||| ||||||||| |||||||||||||||||||| |||||||||||||||    
T  16558717 tgtggtcagcaagacaacacttaaatataccgtatcttacggtggaccgcgtttctctatttttcataaattaaataataa 16558797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 28755534 - 28755579
Alignment:
Q  147 cttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||| |||| | ||||||||||||||||||||||||||||||    
T  28755534 cttacggtaaaccacatttctctatttttcgtaaattaaataataa 28755579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 155
Target Start/End: Original strand, 16393660 - 16393743
Alignment:
Q  75 aatgcttcagcacaagagttctatttatagaatcacttgtg--gtcagcaagacaa-cacttagctacatcgtaccttacggtg 155  Q
    |||| ||||||||||| ||||||||||||||| ||||||||  |||| |||| ||| ||||||  |||| ||||||||||||||    
T  16393660 aatgtttcagcacaagtgttctatttatagaaccacttgtgtcgtcatcaagtcaatcacttaaatacaccgtaccttacggtg 16393743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 750 - 796
Target Start/End: Original strand, 9313537 - 9313584
Alignment:
Q  750 tgatagacttttaacaagtgtactaaaaat-tatcgaagcaataaaat 796  Q
    ||||| |||||||||||||||||||||||| |||||||| ||||||||    
T  9313537 tgataaacttttaacaagtgtactaaaaatatatcgaagtaataaaat 9313584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 750 - 796
Target Start/End: Complemental strand, 16731696 - 16731649
Alignment:
Q  750 tgatagacttttaacaagtgtactaaaaat-tatcgaagcaataaaat 796  Q
    ||||||||||||| |||||||||||||||| |||||||| ||||||||    
T  16731696 tgatagacttttagcaagtgtactaaaaatatatcgaagtaataaaat 16731649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 115
Target Start/End: Complemental strand, 18336592 - 18336553
Alignment:
Q  76 atgcttcagcacaagagttctatttatagaatcacttgtg 115  Q
    |||||| |||||||||||||||||||||||| ||||||||    
T  18336592 atgctttagcacaagagttctatttatagaaccacttgtg 18336553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 750 - 795
Target Start/End: Complemental strand, 24371574 - 24371530
Alignment:
Q  750 tgatagacttttaacaagtgtactaaaaattatcgaagcaataaaa 795  Q
    ||||||| |||||||||||||||| ||||||||||||| |||||||    
T  24371574 tgatagaattttaacaagtgtact-aaaattatcgaagtaataaaa 24371530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 117; Significance: 4e-59; HSPs: 2)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 10346 - 10537
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  | ||| |||| |||||| |||||||||||    
T  10346 caaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtcatgtttcaacacaagggttctatttat 10445  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||  ||||| || ||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10446 agaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 10537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 1453 - 1646
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttcta--ttt 100  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  | ||| |||| |||||| ||||||  |||    
T  1453 caaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtcatgtttcaacacaagggttctattttt 1552  T
Q  101 atagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||||  ||||| || ||||||||||||||  |||| |||||||||||||| |||||||||||||||||||||||| ||||| |||||    
T  1553 atagaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaagttaaacaataa 1646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 4e-59; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 11535196 - 11535387
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||||||||||| |||| |||||| |||  |||||||||| |||||| |||||||||||    
T  11535196 caaggtttagagagcggtggctagggtttcacaacttttgtgaattaggttaagcactaacaaaaagttagtaatgcttcaacacaagggttctatttat 11535295  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||  ||||| || ||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11535296 agaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 11535387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 11542114 - 11542305
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    ||||||||||||| || |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| |||||||||||    
T  11542114 caaggtttagagaacggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctatttat 11542213  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||  ||||| || ||||||||| ||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11542214 agaatcacttgtgtggacaacaagacaacgcttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 11542305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 29328861 - 29328666
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttcta----t 98  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  |||||||||| |||||| ||||||    |    
T  29328861 caaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctattttt 29328762  T
Q  99 ttatagaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||||||  ||||| || ||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29328761 ttatagaatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 29328666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 4 - 192
Target Start/End: Complemental strand, 18562105 - 18561913
Alignment:
Q  4 aaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttata 103  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||| | ||||||||||| |||  |||| ||||| |||||| ||||||||||||    
T  18562105 aaggtttagagagcggcggctagggtttcacaacttttgtgaattaggtttagcactcacaaaaagttagtaatacttcaacacaagggttctatttata 18562006  T
Q  104 gaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctcta--tttttcgtaaattaaataataa 192  Q
    |||| |||||||  |||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||  ||||||||||||||||||||||    
T  18562005 gaattacttgtgtagtcagcaagacaacacttagatacaccgtactttacggtggaccgcgtttctctatttttttcgtaaattaaataataa 18561913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 29 - 192
Target Start/End: Original strand, 24850719 - 24850884
Alignment:
Q  29 tttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttatagaatcacttgtg--gtcagcaagac 126  Q
    ||||||||||||||||||||||||||| ||||| ||||| |||| |||||||||| || ||| ||||||||||||||||||||||||  |||||||| ||    
T  24850719 tttcacaacttttgtgaattaggttaagcactcccaaaaagttcgtaatgcttcaacataagggttctatttatagaatcacttgtgtggtcagcaaaac 24850818  T
Q  127 aacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24850819 aacacttaaatacaccgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 24850884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 12739615 - 12739424
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||| | ||||||||||||||||||||||||||| ||||||||||| |||  ||||||| ||  ||||  |||||||||||    
T  12739615 caaggtttagagagcggcggctacggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgctacaaaacaaaggttctatttat 12739516  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||  |||||||||||||||||||||||  ||||| |||||||||| |  ||||||||||||||||||||||||||||||||||||    
T  12739515 agaatcacttgtgtggtcagcaagacaacacttaaatacattgtaccttacgatagaccgcgtttctctatttttcgtaaattaaataataa 12739424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 7 - 190
Target Start/End: Complemental strand, 15153536 - 15153352
Alignment:
Q  7 gtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttatagaa 106  Q
    |||||||||||| |||||||| ||||||||||||||||||| ||||| | ||||||||||| |||  |||||||||| |||||| |||||||||||||||    
T  15153536 gtttagagagcggcggctagg-tttcacaacttttgtgaatgaggtttagcactcacaaaaagtttgtaatgcttcaacacaagggttctatttatagaa 15153438  T
Q  107 tcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataat 190  Q
    |||||||||  |||||||||||||||||||   ||| |||||||||||||| |||||||||||||||||||| |||||||||||||    
T  15153437 tcacttgtgtggtcagcaagacaacacttaaacacaccgtaccttacggtggaccgcgtttctctatttttcataaattaaataat 15153352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 12751932 - 12751741
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||| | ||||||||||||||| ||| ||||||| ||||||||||| |||  |||||||||| |||||  |||| ||||||    
T  12751932 caaggtttagagagcggcggctacggtttcacaacttttgtaaatgaggttaagcactcacaaaaagttagtaatgcttcaacacaatggttccatttat 12751833  T
Q  103 agaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||  |||||||||||||||||||||||  |||| |||||||||||||  || |||||||||||||||||||||||||||||||||    
T  12751832 agaatcacttgtgtggtcagcaagacaacacttaaatacaccgtaccttacggtagactgcgtttctctatttttcgtaaattaaataataa 12751741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 11557207 - 11557392
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttat 102  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| |||       | ||||||| || ||| |||||||||||    
T  11557207 caaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcaccaaaa------agtgcttcaacataagggttctatttat 11557300  T
Q  103 agaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||||||  |||||||||||||||||||  |||| |||||||||||||| || |||||||||||||||||||||||||||||||||    
T  11557301 agaatcacttgtgtggtcagcaagacaacacttaaatacaacgtaccttacggtggactgcgtttctctatttttcgtaaattaaataataa 11557392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 9978900 - 9978834
Alignment:
Q  4 aaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggt 70  Q
    ||||||||||||||| |||||||| |||||||||||||| |||||||||||| ||||||||||||||    
T  9978900 aaggtttagagagcggcggctagggtttcacaacttttgcgaattaggttaagcactcacaaaaggt 9978834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 13393217 - 13393080
Alignment:
Q  21 ggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttatagaatcact--tgtggtc 118  Q
    ||||||| ||||||||||||||| |||||||||||    ||||||||  |   ||||| ||||||||||| ||||||||||||||||||||  |||||||    
T  13393217 ggctagggtttcacaacttttgtaaattaggttaagtgttcacaaaaactatgtaatgtttcagcacaagggttctatttatagaatcacttgtgtggtc 13393118  T
Q  119 agcaagacaa-cacttagctacatcgtaccttacggtg 155  Q
    |||||  ||| ||||||  |||||||||||||||||||    
T  13393117 agcaaaccaagcacttaagtacatcgtaccttacggtg 13393080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 2653122 - 2653186
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaa 67  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||| ||||    
T  2653122 caaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcataaaa 2653186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 13393060 - 13393006
Alignment:
Q  138 acatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  13393060 acattgtaccttacggtggaccgcatttctctatttttcgtaaattaaataataa 13393006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 746 - 798
Target Start/End: Original strand, 4595765 - 4595818
Alignment:
Q  746 atattgatagacttttaacaagtgtactaaaaat-tatcgaagcaataaaatat 798  Q
    ||||||||||||||||| ||||||||||||||||  ||||||| ||||||||||    
T  4595765 atattgatagacttttagcaagtgtactaaaaatgcatcgaagtaataaaatat 4595818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 749 - 796
Target Start/End: Original strand, 22083193 - 22083241
Alignment:
Q  749 ttgatagacttttaacaagtgtactaaaaat-tatcgaagcaataaaat 796  Q
    |||||||||||||| |||||||||||||| | |||||||||||||||||    
T  22083193 ttgatagacttttagcaagtgtactaaaattatatcgaagcaataaaat 22083241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 9978832 - 9978782
Alignment:
Q  86 acaagagttctatttatagaatcact--tgtggtcagcaagacaacactta 134  Q
    ||||| |||||||||||||||||| |  |||||||||||||||||||||||    
T  9978832 acaagggttctatttatagaatcaatcgtgtggtcagcaagacaacactta 9978782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1199 (Bit Score: 112; Significance: 3e-56; HSPs: 1)
Name: scaffold1199
Description:

Target: scaffold1199; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 3 - 190
Target Start/End: Complemental strand, 198 - 4
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcac-----aaaaggttcataatgcttcagcacaagagttcta 97  Q
    ||||||||||| |||| |||||| | ||||||||||||||||||||||||||| |||||||     |||| ||||||||||||||| |||||| ||||||    
T  198 caaggtttagatagcggcggctatggtttcacaacttttgtgaattaggttaagcactcacttttcaaaaagttcataatgcttcaacacaagggttcta 99  T
Q  98 tttatagaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataat 190  Q
    |||||||||| |||||||  |||||||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  98 tttatagaataacttgtgtggtcagcaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataat 4  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 8e-54; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 4 - 192
Target Start/End: Original strand, 19706307 - 19706497
Alignment:
Q  4 aaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttata 103  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| ||| |||  | |||||||| || ||| ||||||||||||    
T  19706307 aaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcactaaaagttagttatgcttcaacataagggttctatttata 19706406  T
Q  104 gaatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    ||||||||  |||||||| ||||||||||||||  || | |||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  19706407 gaatcacttgtgtggtcaacaagacaacacttaaatataccgtatcttacggtggaccgcgtttctctatttttcgtaaattaaataataa 19706497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 4 - 192
Target Start/End: Original strand, 19713635 - 19713823
Alignment:
Q  4 aaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttata 103  Q
    ||||||||||||||| | |||||| ||||||||||||||||||||||||||| ||||||| ||| |||  | |||||||| |||||| ||||||||||||    
T  19713635 aaggtttagagagcggcagctagggtttcacaacttttgtgaattaggttaagcactcactaaaagttagttatgcttcaacacaagggttctatttata 19713734  T
Q  104 gaatcacttgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    ||||||||||||    |||||||||||||||  || |  ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19713735 gaatcacttgtgtggtgcaagacaacacttaaatatactgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 19713823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 24694596 - 24694783
Alignment:
Q  5 aggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttatag 104  Q
    ||||||||||| || |||||||| ||||||||||||||||||||||||||| ||| || |||  |||  |||||||||| |||||| ||||||||||| |    
T  24694596 aggtttagagaacggcggctagggtttcacaacttttgtgaattaggttaagcacccaaaaa--gttagtaatgcttcaacacaagggttctatttatgg 24694693  T
Q  105 aatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||||  | || ||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24694694 aatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 24694783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 24701360 - 24701547
Alignment:
Q  5 aggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttatag 104  Q
    ||||||||||| || |||||||| ||||||||||||||||||||||||||| ||| || |||  |||  |||||||||| |||||| ||||||||||| |    
T  24701360 aggtttagagaacggcggctagggtttcacaacttttgtgaattaggttaagcacccaaaaa--gttagtaatgcttcaacacaagggttctatttatgg 24701457  T
Q  105 aatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||||  | || ||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24701458 aatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 24701547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 18565594 - 18565791
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaag-gttcataatgcttcagcacaaga-----gttct 96  Q
    ||||||||||||| || |||||||| ||||||||||||||||||||||||||| |||||||||||  |||  |||||||||| ||||| |     |||||    
T  18565594 caaggtttagagaccggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaaagtttgtaatgcttcaacacaacacaagggttct 18565693  T
Q  97 atttatagaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||||||||||||  |||||||||||||||||||  |||| ||| |||||| ||| |||||||||||||| |||||||||||||||||||||    
T  18565694 atttatagaatcacttgtgtggtcagcaagacaacacttaaatacaccgtgccttacagtggaccgcgtttctctaattttcgtaaattaaataataa 18565791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 749 - 797
Target Start/End: Original strand, 21335458 - 21335507
Alignment:
Q  749 ttgatagacttttaacaagtgtactaaaaat-tatcgaagcaataaaata 797  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  21335458 ttgatagacttttaacaagtgtactaaaaatgtatcgaagtaataaaata 21335507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 750 - 797
Target Start/End: Complemental strand, 7271385 - 7271337
Alignment:
Q  750 tgatagacttttaacaagtgtactaaaaat-tatcgaagcaataaaata 797  Q
    ||||||||||||| |||||||||||||||| |||||||| |||||||||    
T  7271385 tgatagacttttagcaagtgtactaaaaatgtatcgaagtaataaaata 7271337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 750 - 797
Target Start/End: Original strand, 21332440 - 21332488
Alignment:
Q  750 tgatagacttttaacaagtgtactaaaaat-tatcgaagcaataaaata 797  Q
    ||||||||||||| |||||||||||||||| |||||||| |||||||||    
T  21332440 tgatagacttttagcaagtgtactaaaaatgtatcgaagtaataaaata 21332488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 750 - 797
Target Start/End: Complemental strand, 33552488 - 33552440
Alignment:
Q  750 tgatagacttttaacaagtgtactaaaaat-tatcgaagcaataaaata 797  Q
    |||||||||||||||| ||||||||||||| |||||||| |||||||||    
T  33552488 tgatagacttttaacatgtgtactaaaaatgtatcgaagtaataaaata 33552440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 8e-54; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 7 - 192
Target Start/End: Original strand, 21329380 - 21329569
Alignment:
Q  7 gtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttcta--tttatag 104  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  ||||| |||| |||||| ||||||  |||||||    
T  21329380 gtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgtttcaacacaagggttctatttttatag 21329479  T
Q  105 aatcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||  ||||| || ||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21329480 aatcacttgtgtggacaacaagacaacacttaaatacaccgtaccttacggtggaccgcgtttctctatttttcgtaaattaaataataa 21329569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 22790974 - 22791158
Alignment:
Q  10 tagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttatagaatca 109  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  ||||||| ||  ||||| ||||||||||||||||||    
T  22790974 tagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgctacaaaacaagggttctatttatagaatca 22791073  T
Q  110 ct--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    ||  |||||||||||||||||||||||  |||| |||||||||| ||| || ||||||||||||||||||| |||||||||||||    
T  22791074 cttgtgtggtcagcaagacaacacttaaatacaccgtaccttacagtggactgcgtttctctatttttcgtgaattaaataataa 22791158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 41664839 - 41664786
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaa 56  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  41664839 caaggtttagagaacgacggctagggtttcacaacttttgtgaattaggttaaa 41664786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 748 - 797
Target Start/End: Complemental strand, 5666868 - 5666818
Alignment:
Q  748 attgatagacttttaacaagtgtactaaaaat-tatcgaagcaataaaata 797  Q
    ||||||||||||||| |||||||| ||||||| |||||||| |||||||||    
T  5666868 attgatagacttttagcaagtgtattaaaaatatatcgaagtaataaaata 5666818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 18620730 - 18620681
Alignment:
Q  142 cgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    ||||| |||||||| ||| ||||||||||||||| ||||||||||||||||    
T  18620730 cgtacattacggtggaccacgtttctctattttt-gtaaattaaataataa 18620681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 98; Significance: 8e-48; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 7 - 192
Target Start/End: Complemental strand, 8177 - 7989
Alignment:
Q  7 gtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaaggttcataatgcttcagcacaagagttctatttatagaa 106  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |||  ||||| |||| |||||| |||||||||||||||    
T  8177 gtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgtttcaacacaagggttctatttatagaa 8078  T
Q  107 tcact--tgtggtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctcta-tttttcgtaaattaaataataa 192  Q
    |||||  ||||| || ||||||||||||||  |||| | |||||||||||| |||||||||||||| |||||||||| ||||| |||||    
T  8077 tcacttgtgtggacaacaagacaacacttaaatacaccataccttacggtggaccgcgtttctctattttttcgtaagttaaacaataa 7989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 92; Significance: 3e-44; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 229521 - 229716
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaag----gttcataatgcttcagcacaagagttctat 98  Q
    |||||||||||||||| |||||||| |||||| |||||||||||||||||||| |||| | ||||     |||| | |||||||| || ||| |||||||    
T  229521 caaggtttagagagcggcggctagggtttcaccacttttgtgaattaggttaagcactaaaaaaaaaaaagttcgtcatgcttcaacagaagggttctat 229620  T
Q  99 ttatagaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||||||||||  |||||||||| ||||||||  |||| |||||||||||||| ||| | ||||||||||||||||||||||||||||||    
T  229621 ttatagaatcacttgtgtggtcagcaagaaaacacttaaatacaccgtaccttacggtggaccacatttctctatttttcgtaaattaaataataa 229716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 90; Significance: 5e-43; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 7 - 192
Target Start/End: Complemental strand, 19382 - 19194
Alignment:
Q  7 gtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacact-cacaaaaggttcataatgcttcagcacaagagttctatttataga 105  Q
    |||||||||| | |||||||| ||||||||||||||||||||||||||| |||| ||||||| |||  ||||| |||| |||||| ||||||||||||||    
T  19382 gtttagagagtggcggctagggtttcacaacttttgtgaattaggttaagcacttcacaaaaagttagtaatgtttcaacacaagggttctatttataga 19283  T
Q  106 atcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    ||||||||||  | || ||||||||||||||  |||| |||||||| | ||| ||||||||||| ||| ||||||||||||||||||||    
T  19282 atcacttgtgtgggcaacaagacaacacttaaatacaccgtaccttccagtggaccgcgtttctttatatttcgtaaattaaataataa 19194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 88; Significance: 7e-42; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 6601 - 6404
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactcacaaaag------gttcataatgcttcagcacaagagttct 96  Q
    |||||||||||||||| |||||||| |||||| |||||||||||||||||||| |||| | ||||       |||| | |||||||| |||||| |||||    
T  6601 caaggtttagagagcggcggctagggtttcaccacttttgtgaattaggttaagcactaaaaaaaaaaaaaagttcgtcatgcttcaacacaagggttct 6502  T
Q  97 atttatagaatcacttgtg--gtcagcaagacaacacttagctacatcgtaccttacggtgaaccgcgtttctctatttttcgtaaattaaataataa 192  Q
    |||||||||||||||||||  |||||||||||||||||||  |||| | ||| |||||||| |||| ||||||| |||||||||||||||||||||||    
T  6501 atttatagaatcacttgtgtggtcagcaagacaacacttaaatacaccatactttacggtggaccgagtttctccatttttcgtaaattaaataataa 6404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 549 - 602
Target Start/End: Complemental strand, 1733 - 1680
Alignment:
Q  549 ataaagttatgtacaaatataaatcaccgttggatatttatgaacaagtagaac 602  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  1733 ataaagttatgtacgaatataaatcaccattggatatttatgaacaagtagaac 1680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1952 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1952
Description:

Target: scaffold1952; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 550 - 612
Target Start/End: Original strand, 306 - 368
Alignment:
Q  550 taaagttatgtacaaatataaatcaccgttggatatttatgaacaagtagaacatatgttatg 612  Q
    ||||||||||||| ||||||||||||  ||  ||||||||||||||||||||  |||||||||    
T  306 taaagttatgtacgaatataaatcacaattaaatatttatgaacaagtagaatgtatgttatg 368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 107381 - 107494
Alignment:
Q  3 caaggtttagagagcgacggctaggatttcacaacttttgtgaattaggttaaacactca-caaaaggttcataatgcttcagcacaagagttctattta 101  Q
    |||| |||| |||| | |||||||| |||||||||||||||||||||  ||||    ||| |||||  ||  ||||||||||||||||| ||||||||||    
T  107381 caagatttaaagagtggcggctagggtttcacaacttttgtgaattatcttaagtgttcaacaaaaacttagtaatgcttcagcacaagggttctattta 107480  T
Q  102 tagaatcacttgtg 115  Q
     |||| ||||||||    
T  107481 cagaaccacttgtg 107494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 115
Target Start/End: Complemental strand, 49 - 10
Alignment:
Q  76 atgcttcagcacaagagttctatttatagaatcacttgtg 115  Q
    |||||| |||||||||||||||||||||||| ||||||||    
T  49 atgctttagcacaagagttctatttatagaaccacttgtg 10  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1826 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold1826
Description:

Target: scaffold1826; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 550 - 612
Target Start/End: Original strand, 524 - 586
Alignment:
Q  550 taaagttatgtacaaatataaatcaccgttggatatttatgaacaagtagaacatatgttatg 612  Q
    |||||||||||||||||||||  |||  ||  ||||||||||||||||||||  |||||||||    
T  524 taaagttatgtacaaatataaggcacaatttaatatttatgaacaagtagaatgtatgttatg 586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0911 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0911
Description:

Target: scaffold0911; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 550 - 612
Target Start/End: Original strand, 1133 - 1195
Alignment:
Q  550 taaagttatgtacaaatataaatcaccgttggatatttatgaacaagtagaacatatgttatg 612  Q
    ||||||||||||| |||||||| |||  ||  |||||| ||||||||||| ||||||||||||    
T  1133 taaagttatgtacgaatataaagcacaattaaatatttttgaacaagtaggacatatgttatg 1195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 749 - 797
Target Start/End: Complemental strand, 90128 - 90079
Alignment:
Q  749 ttgatagacttttaacaagtgtactaaaaat-tatcgaagcaataaaata 797  Q
    |||||||||||||| ||||||||||||||||  ||||||| |||||||||    
T  90128 ttgatagacttttagcaagtgtactaaaaatgcatcgaagtaataaaata 90079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 795
Target Start/End: Original strand, 99007 - 99044
Alignment:
Q  758 ttttaacaagtgtactaaaaattatcgaagcaataaaa 795  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  99007 ttttagcaagtgtactaaaaattatcgaagtaataaaa 99044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 795
Target Start/End: Original strand, 118221 - 118258
Alignment:
Q  758 ttttaacaagtgtactaaaaattatcgaagcaataaaa 795  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  118221 ttttaacaagtgtactaaaaactatcgaagtaataaaa 118258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University