View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8069_high_10 (Length: 502)
Name: NF8069_high_10
Description: NF8069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8069_high_10 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 23 - 502
Target Start/End: Complemental strand, 29637 - 29158
Alignment:
| Q |
23 |
gagtattggaaactgtttgtggagtatttgaaagatttgaaagtatccgaggagtatccgcttaaaatatttttaagaaataacaaaatattaggataag |
122 |
Q |
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| T |
29637 |
gagtattggaaactgtttgtggagtatttgaaagatttgaaagtatccgaggagtatccgcttaaaatatttttaagaaataacaaaatactaggataag |
29538 |
T |
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| Q |
123 |
tatcaggttgtattcggaaagtgtcggtgtctgatatgggtatgacaccaacacttttcccattttgaagtatccgtgctttataggagagaaccatttc |
222 |
Q |
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| T |
29537 |
tatcaggttgtattcggaaagtgtcggtgtctgatatgggtatgacaccaacacttttcccattttgaagtatccgtgctttataggagagaactatttc |
29438 |
T |
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| Q |
223 |
taattggtgccaaacccaagaagaaatggatgcgggatttgaagagcgagatccttgtctcaggaggctggagcaaatggtggaaggattgacgacttcg |
322 |
Q |
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| T |
29437 |
taattggtgccaaacccaagaagaaatggatgcgggatttgaagagcgagatccttgtctcaggaggctggagcaaatggtggaaggattgacgacttcg |
29338 |
T |
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| Q |
323 |
gtgagtgagcacattaagaaagcaagtcaccaagcagaaaagatgagaaataagagaaaagcggagacacccatcttcgccgaggagggcccatgtggtg |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29337 |
gtgagtgagcacattaagaaagcaagtcaccaagcagaaaagatgagaaataagagaaaagtggagacacccatcttcgccgaggagggcccatgtggtg |
29238 |
T |
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| Q |
423 |
gggttagtaggctagaattggggaagcctacaatcgtggagatgagagaacccaaaaggtggcgacagcggggcggaaac |
502 |
Q |
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| T |
29237 |
gggttagtaggctagaattggggaagcctacaatcgtggagatgagagaacccaaaaggtggcgacagcgggacggaaac |
29158 |
T |
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