View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8069_high_19 (Length: 283)
Name: NF8069_high_19
Description: NF8069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8069_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 23 - 273
Target Start/End: Complemental strand, 44034950 - 44034700
Alignment:
| Q |
23 |
gatcaagtttgatcaaaagattaggataatacaaaatctcttatctttgaccaaaattggagtgatgagttataaactcttctaccnnnnnnntatagct |
122 |
Q |
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| T |
44034950 |
gatcaagtttgatcaaaagattaggataatacaaaatctcttatctttgaccaaaattggagtgatgagttataaactcttctaccaaaaaaatatagct |
44034851 |
T |
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| Q |
123 |
ttagcctttaaaagcaattgaacaagtttgttctgaacattgaggcttatgagttcatcaataccacctatgaattgttgtcctatgaaaacagcaggta |
222 |
Q |
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| T |
44034850 |
ttagcctttaaaagcaattgaacaagtttgttctgaacattgaggcttatgagttcatcaataccacctatgaattgttgtcctatgaaaacagcaggta |
44034751 |
T |
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| Q |
223 |
cagttggtctacgtccaagctgaatcagtgctctctctatttgatgtccat |
273 |
Q |
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| T |
44034750 |
cagttggtctacgtccaagctgaatcagtgctctctctatttgttgtccat |
44034700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 44028339 - 44028294
Alignment:
| Q |
185 |
accacctatgaattgttgtcctatgaaaacagcaggtacagttggt |
230 |
Q |
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| T |
44028339 |
accacctctgaattgttgtcctatgaaaacagcaggtacacttggt |
44028294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 264
Target Start/End: Original strand, 39828429 - 39828569
Alignment:
| Q |
124 |
tagcctttaaaagcaattgaacaagtttgttctgaacattgaggcttatgagttcatcaataccacctatgaattgttgtcctatgaaaacagcaggtac |
223 |
Q |
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| T |
39828429 |
tagccttcaaaagcaactgagcaagcttattttggacattgaggcttatgacttgattaacaccacctacaaattgttgtcctataaacacagctggcac |
39828528 |
T |
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| Q |
224 |
agttggtctacgtccaagctgaatcagtgctctctctattt |
264 |
Q |
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| T |
39828529 |
acttggtcgacaaccaagctgaaccaatgcactttctattt |
39828569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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