View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8069_high_22 (Length: 257)
Name: NF8069_high_22
Description: NF8069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8069_high_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 51426730 - 51426492
Alignment:
| Q |
1 |
acaaacatggtcaaagtggtggtaattttaataatgtttaaaaatggtggttctcgcaaatgtttgtcgaagtggtgatcagtggtggttggcgatcacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
51426730 |
acaaacatggtcaaagtggtggtaattttaataatgtttgaaaatggtggttctcgcaaatgtttgtcgaagtggtgatcagtggtggttggcggtcgcc |
51426631 |
T |
|
| Q |
101 |
gcagtggttggtaatgtggtagttggtggtgatggatggcagacagagtgagtaatagtcaatgtggtgaatggtggtgatttttggtggtcggagtagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51426630 |
gcagtggttggtaatgtggtagttggtggtgatggatggcagacagagtgagtagtagtcaatgtggtgaatggtggtgatttttggtggtcggagtagt |
51426531 |
T |
|
| Q |
201 |
ggctagagtggtggtaggattgttaattgcaggtggatg |
239 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
51426530 |
ggctagagtggtggtaggattgttgattgcaggtggatg |
51426492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University