View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8069_high_3 (Length: 646)
Name: NF8069_high_3
Description: NF8069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8069_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 20 - 631
Target Start/End: Original strand, 42087692 - 42088303
Alignment:
| Q |
20 |
tctccaagcaactcatgctttcaacattttttcctttaaacccttcatgaatattctcttcttcctccatcatattatatatggctaaggcctaagtttt |
119 |
Q |
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| T |
42087692 |
tctctaagcaactcatgctttcaacattttttcctttaaacccttcatgaatattctcttcttcctccatcatattatatatggctaaggcctaagtttt |
42087791 |
T |
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| Q |
120 |
gaattttcggaatttgaaggaagatttgtttaataataaaaaagattaaaatttggtgagggggaataggatgtagaatatatatagctaaaaaagaatg |
219 |
Q |
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| T |
42087792 |
gaatttttggaatttgaaggaagatttgtttaataataaaaaagattaaaatttgttgagggggaataggatgtagaatatatatagctaaaaaagaatg |
42087891 |
T |
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| Q |
220 |
tatgtcaaggttatttgtatcacgttattggaacttgtaaaggaaggatcatagtgacttatggtactagaaaacgtgtggtgcttactatctttttatt |
319 |
Q |
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| T |
42087892 |
tatgtcaaggttatttgtatcacgttattggaacttgtaaaggaaggatcatagtgacttatggtactagaaaacgtgtggtgcttactatctttttatt |
42087991 |
T |
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| Q |
320 |
tgctaggtagaaaaaacgtagaccgttacttttctcactctacgagtttctcatgcgtcctattctaattttaacattcaaaatatttcaaacgcgtttt |
419 |
Q |
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| T |
42087992 |
tgctaggtagaaagaaagtagaccgttacttttctcactctatgagtttttcgtgcgtcctattctgattttaaaatctaaaatatttcaaacgtatttt |
42088091 |
T |
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| Q |
420 |
aagaattttttataggctgtctgtattgttcggattatataacctaaactgcataaaacacacgagaagctcatagagttggaaaagaagcactcaagaa |
519 |
Q |
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| T |
42088092 |
tagaagtttttagggaatgtctgtatcgttcagattatataacctgaactgcataagacacacgagaaactcatagagttggaaaagaagcactcaagaa |
42088191 |
T |
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| Q |
520 |
attatctttgttagtttacttgttgtaggacatctaatggccctatctatttcatttgtagaaggaactctttacttgtcacgagttgtcacgttcatgc |
619 |
Q |
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| T |
42088192 |
attatctttgttagtttacttgttgtaggacatctaatggccttatctatttcatttgtagaaggaactctttacttgtcacgagttgtcacgttcatgc |
42088291 |
T |
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| Q |
620 |
cacacgtctctg |
631 |
Q |
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| T |
42088292 |
cacacgtctctg |
42088303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 447 - 511
Target Start/End: Complemental strand, 13019661 - 13019597
Alignment:
| Q |
447 |
gttcggattatataacctaaactgcataaaacacacgagaagctcatagagttggaaaagaagca |
511 |
Q |
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| T |
13019661 |
gttcggattctataatccaaactgcataggacgcatgagaagttcatagagtgggaaaagaagca |
13019597 |
T |
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