View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8069_high_5 (Length: 607)
Name: NF8069_high_5
Description: NF8069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8069_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 13 - 587
Target Start/End: Complemental strand, 30467918 - 30467357
Alignment:
| Q |
13 |
aacctgtgaagtgatgacgcccccacttttaaacacatgcccttatcgtctctcatcgaagtatgtatgtatgaatgtatgtatgcatggcaaaggaaat |
112 |
Q |
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| T |
30467918 |
aacctgtgaagtgatgacgcccccatttttaaacacatacccttatcgtctctcatcgaagtatgtatgtatgtatg------------gcgaaggaaat |
30467831 |
T |
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| Q |
113 |
ttagtaccggttgtaagtcgaagaagtgaccgggagcaggaggggtgctaatgccgtgatctgctttacacatgccatggccggggattggacatccaaa |
212 |
Q |
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| T |
30467830 |
ttagtaccggttgtaagtcgaagaagtgaccgggagcaggaggggtgctaatgccgtgatctgctttacacatgccatggccggggattggacatccaaa |
30467731 |
T |
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| Q |
213 |
tgatggtctctgcatgttatgttattttcctctatggtcagtcagccaaacttatatatggagtatagtttgtgtatgtgtttgtgagtaaatatatatt |
312 |
Q |
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| T |
30467730 |
tgatggtctctgcatgttatgttattttcctctatggtcagtcagccaaacttatatatggagtatagtttgtgtatgtgtttgtgagtaaatatatatt |
30467631 |
T |
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| Q |
313 |
cgacaacatacataattatgtgctatatttatatatgttggtaaatatgacaatactaaaatttgtatactgtcaatcttgtctttaaaaaggatccaaa |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30467630 |
cgacaacatacataattatgtgctatatttatatatgttggtaaatatgacaatact--aatttgtatactgtcaatcttgtctttaaaaaggatccaaa |
30467533 |
T |
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| Q |
413 |
attcagagaagaaaacaacgtgcatggctccaaaa-agtaaagtaatgtaatgaatagttaccactgttgtcggaggtggtgggaaacaatgtgttcctg |
511 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30467532 |
attcagagaagaaaacaacgtgcatggctccaaaatagtaaagtgatgtaatgaatagttaccactgttgtcagaggtggtgggaaacaatgtgttcctg |
30467433 |
T |
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| Q |
512 |
cccggattattgcggttgttggagtctgttgatcaacggtcaaagaaatgcatcacacactttagatagacagatc |
587 |
Q |
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| T |
30467432 |
cccggattattgcggttgttggagtctgttgatcaacggtcaaagaaatacatcacacactttagatagacagatc |
30467357 |
T |
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