View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8069_high_7 (Length: 555)
Name: NF8069_high_7
Description: NF8069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8069_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 13 - 536
Target Start/End: Complemental strand, 38584167 - 38583644
Alignment:
| Q |
13 |
gagatgaagatcaaaaagcttttaccggtcgatgcggagtctcggagactgattgattggatggagaaaggcacgtttaagctatattatctgattgaac |
112 |
Q |
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| T |
38584167 |
gagatgaagatcaaaaagcttttaccggtcgatgcggagtctcggagactgattgattggatggagaaaggcacgtttaagctatattatctgattgaac |
38584068 |
T |
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| Q |
113 |
ttatagaaaatgagttttaattgcttgttttgatttgacttattgtatttcttttccaggtgtttacgatgccttgcagaagaagtacctgaagactctt |
212 |
Q |
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| T |
38584067 |
ttatagaaaatgagttttaattgcttgttttgatttgacttattgtatttcttttccaggtgtttacgatgccttgcagaagaagtacctgaagactctt |
38583968 |
T |
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| Q |
213 |
ctattctgtgtgtgtgaagcagtggatggaccgatgattgaggaatatgcatgtaaggatttggcataggttatttgaatgtgatggaattgggaaattg |
312 |
Q |
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| T |
38583967 |
ctattctgtgtgtgtgaagcagtggatggaccgatgattgaggaatatgcatgtaaggatttggcataggttatttgaatgtgatggaattgggaaattg |
38583868 |
T |
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| Q |
313 |
tatttaaatgaataccgaacataggttattgctttaggaagactgctatatgtggtagttgcaaaatgtagattccagtataatttaatttgagacactt |
412 |
Q |
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| T |
38583867 |
tatttgaatgaataccgaacataggttattgctttaggaagactgctatatatggtagttgcaaaatgtagattccagtataatttaatttgagacactt |
38583768 |
T |
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| Q |
413 |
atgaaagattcataaacatagctacttttctcttgcagtttcctttagctactcagattccgagaagcaagaggtttcaatgaacatcaaccgcactgga |
512 |
Q |
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| T |
38583767 |
atggaagattcataaacatagctacttttctcttgcagtttcctttagctattcagattccgagaagcaagaggtttcaatgaacatcaaccgcactgga |
38583668 |
T |
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| Q |
513 |
agcaaaaagcaggggggagccttc |
536 |
Q |
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| T |
38583667 |
agcaaaaagcaggggggagccttc |
38583644 |
T |
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