View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8069_low_12 (Length: 502)

Name: NF8069_low_12
Description: NF8069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8069_low_12
NF8069_low_12
[»] scaffold0147 (1 HSPs)
scaffold0147 (23-502)||(29158-29637)


Alignment Details
Target: scaffold0147 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 23 - 502
Target Start/End: Complemental strand, 29637 - 29158
Alignment:
Q  23 gagtattggaaactgtttgtggagtatttgaaagatttgaaagtatccgaggagtatccgcttaaaatatttttaagaaataacaaaatattaggataag 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29637 gagtattggaaactgtttgtggagtatttgaaagatttgaaagtatccgaggagtatccgcttaaaatatttttaagaaataacaaaatactaggataag 29538  T
Q  123 tatcaggttgtattcggaaagtgtcggtgtctgatatgggtatgacaccaacacttttcccattttgaagtatccgtgctttataggagagaaccatttc 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29537 tatcaggttgtattcggaaagtgtcggtgtctgatatgggtatgacaccaacacttttcccattttgaagtatccgtgctttataggagagaactatttc 29438  T
Q  223 taattggtgccaaacccaagaagaaatggatgcgggatttgaagagcgagatccttgtctcaggaggctggagcaaatggtggaaggattgacgacttcg 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29437 taattggtgccaaacccaagaagaaatggatgcgggatttgaagagcgagatccttgtctcaggaggctggagcaaatggtggaaggattgacgacttcg 29338  T
Q  323 gtgagtgagcacattaagaaagcaagtcaccaagcagaaaagatgagaaataagagaaaagcggagacacccatcttcgccgaggagggcccatgtggtg 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29337 gtgagtgagcacattaagaaagcaagtcaccaagcagaaaagatgagaaataagagaaaagtggagacacccatcttcgccgaggagggcccatgtggtg 29238  T
Q  423 gggttagtaggctagaattggggaagcctacaatcgtggagatgagagaacccaaaaggtggcgacagcggggcggaaac 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29237 gggttagtaggctagaattggggaagcctacaatcgtggagatgagagaacccaaaaggtggcgacagcgggacggaaac 29158  T

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