View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8069_low_13 (Length: 452)

Name: NF8069_low_13
Description: NF8069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8069_low_13
NF8069_low_13
[»] chr2 (2 HSPs)
chr2 (261-440)||(8165524-8165703)
chr2 (29-254)||(8165739-8165959)
[»] chr4 (1 HSPs)
chr4 (20-161)||(12325739-12325880)
[»] scaffold0076 (1 HSPs)
scaffold0076 (20-161)||(47845-47986)
[»] chr8 (4 HSPs)
chr8 (20-136)||(20133884-20134003)
chr8 (20-174)||(14674556-14674707)
chr8 (20-174)||(31710186-31710337)
chr8 (82-173)||(18974394-18974485)
[»] chr7 (2 HSPs)
chr7 (20-136)||(44358068-44358187)
chr7 (82-173)||(5331387-5331478)
[»] chr6 (1 HSPs)
chr6 (20-174)||(4281551-4281702)
[»] chr5 (1 HSPs)
chr5 (20-145)||(11203456-11203578)
[»] chr3 (2 HSPs)
chr3 (82-173)||(19807200-19807291)
chr3 (20-95)||(17594765-17594840)
[»] chr1 (1 HSPs)
chr1 (367-437)||(39101762-39101836)
[»] scaffold0208 (1 HSPs)
scaffold0208 (29-61)||(351-383)


Alignment Details
Target: chr2 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 261 - 440
Target Start/End: Complemental strand, 8165703 - 8165524
Alignment:
Q  261 aaactccttttaaaatattgattgattctactagaaaccaaccccaaattatctcctatctaactaatttaataatatgttaaaatttcaataaagatag 360  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8165703 aaactccttttaaaatattgattgattctactagaaaccaaacccaaattatctcctatctaactaatttaataatatgttaaaatttcaataaagatag 8165604  T
Q  361 atgcgaatccagtacatacaagaaccttaatttttcatgatgttggaaaccatcaatcatgcattatatagtaacaccaa 440  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8165603 atgcgaatccagtacttacaagaaccttaatttttcatgatgttggaaaccatcaatcatgcattatatagtaacaccaa 8165524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 29 - 254
Target Start/End: Complemental strand, 8165959 - 8165739
Alignment:
Q  29 tgagaaattgagtttgtttgttgaatcttgaggccccgaaaattacttaggaagtacaatacccttgttgtagtagtagtaatagaatcaaggatgaaag 128  Q
    ||||||||||||||  || ||||||||||||||||| |||||||||||||||| |||||  ||||||| ||| ||      ||  ||||||| ||||| |    
T  8165959 tgagaaattgagttcattcgttgaatcttgaggccctgaaaattacttaggaaatacaacgcccttgtggtatta------atgaaatcaagaatgaagg 8165866  T
Q  129 tccaatctattgtctccgaaatatcaattatcatagtagattattgggcacagtgcatatataaatatacatatat--tgattgcacagttaatttgcgg 226  Q
    ||||| ||||||||||| ||||||||||||||||| |||||||||||  ||||||| |||||||||||| ||||||  ||||||||||||||||||||||    
T  8165865 tccaacctattgtctccaaaatatcaattatcatactagattattggt-acagtgcgtatataaatatatatatatattgattgcacagttaatttgcgg 8165767  T
Q  227 tcaagcaaatcaaatttggcctcagctt 254  Q
    ||||||||||||||||||||||||||||    
T  8165766 tcaagcaaatcaaatttggcctcagctt 8165739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 12325880 - 12325739
Alignment:
Q  20 tgatgtaggtgagaaattgagtttgtttgttgaatcttgaggccccgaaaattacttaggaagtacaatacccttgttgtagtagtagtaatagaatcaa 119  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12325880 tgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctgtagtagtagtaatagaatcaa 12325781  T
Q  120 ggatgaaagtccaatctattgtctccgaaatatcaattatca 161  Q
    ||||||||||||||||||||||||||  ||||| ||||||||    
T  12325780 ggatgaaagtccaatctattgtctccagaatattaattatca 12325739  T

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Target: scaffold0076 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 47986 - 47845
Alignment:
Q  20 tgatgtaggtgagaaattgagtttgtttgttgaatcttgaggccccgaaaattacttaggaagtacaatacccttgttgtagtagtagtaatagaatcaa 119  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  47986 tgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatactcttgctgtagtagtagtaatagaatcaa 47887  T
Q  120 ggatgaaagtccaatctattgtctccgaaatatcaattatca 161  Q
    ||||||||||||||||||||||||||  ||||| ||||||||    
T  47886 ggatgaaagtccaatctattgtctccagaatattaattatca 47845  T

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Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 20133884 - 20134003
Alignment:
Q  20 tgatgtaggtgagaaattgagtttgtttgttgaatcttgaggccccgaaaattacttaggaagtacaataccct---tgttgtagtagtagtaatagaat 116  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||   ||| |||||||||||||||||||    
T  20133884 tgatgtaggtgagaaattgagtttgtttgttgaatcttgaggtcctgaaaattacttaggaagtacaataccctggctgtagtagtagtagtaatagaat 20133983  T
Q  117 caaggatgaaagtccaatct 136  Q
    ||||||||||||||||||||    
T  20133984 caaggatgaaagtccaatct 20134003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 14674707 - 14674556
Alignment:
Q  20 tgatgtaggtgagaaattgagtttgtttgttgaatcttgaggccccgaaaattacttaggaagtacaatacccttgttgtagtagtagtaatagaatcaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||| ||||||| || | |   |||||     
T  14674707 tgatgtaggtgagaaattgagtttgtttgttgaatcttgaggccctgaaaattacttaggaagtacaacaaccttgctgtagtattaatga---aatcag 14674611  T
Q  120 ggatgaaagtccaatctattgtctccgaaatatcaattatcatagtagattattg 174  Q
    ||||||| |||||| ||||||||||| ||||||||||||||||| |||| |||||    
T  14674610 ggatgaatgtccaacctattgtctccaaaatatcaattatcatactagactattg 14674556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 31710337 - 31710186
Alignment:
Q  20 tgatgtaggtgagaaattgagtttgtttgttgaatcttgaggccccgaaaattacttaggaagtacaatacccttgttgtagtagtagtaatagaatcaa 119  Q
    ||||| || |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||| || | |   |||||     
T  31710337 tgatggagatgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaacacccttgctgtagtattaatga---aatcag 31710241  T
Q  120 ggatgaaagtccaatctattgtctccgaaatatcaattatcatagtagattattg 174  Q
    ||||||| |||||| ||||||||||| ||||||||||||||||| ||||||||||    
T  31710240 ggatgaaggtccaacctattgtctccaaaatatcaattatcatactagattattg 31710186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 82 - 173
Target Start/End: Complemental strand, 18974485 - 18974394
Alignment:
Q  82 gtacaatacccttgttgtagtagtagtaatagaatcaaggatgaaagtccaatctattgtctccgaaatatcaattatcatagtagattatt 173  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||||    
T  18974485 gtacaatacccgtgctgtagtagtagtaatagaatcaaggatgaaagtccaacctattgtctccaaaatatccattatcatactagattatt 18974394  T

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Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 44358187 - 44358068
Alignment:
Q  20 tgatgtaggtgagaaattgagtttgtttgttgaatcttgaggccccgaaaattacttaggaagtacaatacccttgttgtagtagt---agtaatagaat 116  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| | |||||||||   |||||||||||    
T  44358187 tgatgtaggtgagaaattgagtttgtttgttgaatcttgaggtcctgaaaattacttaggaagtacaataccctggctgtagtagtagtagtaatagaat 44358088  T
Q  117 caaggatgaaagtccaatct 136  Q
    ||||||||||||||||||||    
T  44358087 caaggatgaaagtccaatct 44358068  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 5331387 - 5331478
Alignment:
Q  82 gtacaatacccttgttgtagtagtagtaatagaatcaaggatgaaagtccaatctattgtctccgaaatatcaattatcatagtagattatt 173  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||  |||||||| |||||||||    
T  5331387 gtacaatacccgtgctgtagtagtagtaatagaatcaaggatgaaagtccaacctattgtctccaaaatatcccttatcatactagattatt 5331478  T

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Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 174
Target Start/End: Original strand, 4281551 - 4281702
Alignment:
Q  20 tgatgtaggtgagaaattgagtttgtttgttgaatcttgaggccccgaaaattacttaggaagtacaatacccttgttgtagtagtagtaatagaatcaa 119  Q
    ||||| || |||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||| ||||||| ||||||| || | |   |||||     
T  4281551 tgatggagatgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacgtaggaagtacaacacccttgctgtagtattaatga---aatcag 4281647  T
Q  120 ggatgaaagtccaatctattgtctccgaaatatcaattatcatagtagattattg 174  Q
    ||||||| |||||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  4281648 ggatgaaggtccaacctattgtctccaaaatatccattatcatactagattattg 4281702  T

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Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 11203578 - 11203456
Alignment:
Q  20 tgatgtaggtgagaaattgagtttgtttgttgaatcttgaggccccgaaaattacttaggaagtacaatacccttgttgtagtagtagtaatagaatcaa 119  Q
    ||||||||| ||||| |||||||  |||||||||||||||||||| |||||||||||||||||||||||||| ||| |   |||||||||||  ||||||    
T  11203578 tgatgtaggggagaagttgagttcatttgttgaatcttgaggccctgaaaattacttaggaagtacaatacctttgct---gtagtagtaatgaaatcaa 11203482  T
Q  120 ggatgaaagtccaatctattgtctcc 145  Q
    ||||||||||||||||||||||||||    
T  11203481 ggatgaaagtccaatctattgtctcc 11203456  T

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Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 19807200 - 19807291
Alignment:
Q  82 gtacaatacccttgttgtagtagtagtaatagaatcaaggatgaaagtccaatctattgtctccgaaatatcaattatcatagtagattatt 173  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||||    
T  19807200 gtacaatacccgtgctgtagtagtagtaatagaatcaaggatgaaagtccaacctattgtctccaaaatatccattatcatactagattatt 19807291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 17594840 - 17594765
Alignment:
Q  20 tgatgtaggtgagaaattgagtttgtttgttgaatcttgaggccccgaaaattacttaggaagtacaatacccttg 95  Q
    ||||| || |||||||||||||| |||||||||||||||||| || ||||||||||||||||||| || |||||||    
T  17594840 tgatggagatgagaaattgagttcgtttgttgaatcttgaggacctgaaaattacttaggaagtataacacccttg 17594765  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 367 - 437
Target Start/End: Original strand, 39101762 - 39101836
Alignment:
Q  367 atccagtacatacaagaaccttaattttt-catgatgttggaa---accatcaatcatgcattatatagtaacac 437  Q
    |||||| |||||||||||||||||||||| |||| ||||||||   |||||||||||||||||||||||||||||    
T  39101762 atccagcacatacaagaaccttaattttttcatgctgttggaacccaccatcaatcatgcattatatagtaacac 39101836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 351 - 383
Alignment:
Q  29 tgagaaattgagtttgtttgttgaatcttgagg 61  Q
    |||||||||||||||||||||||||||||||||    
T  351 tgagaaattgagtttgtttgttgaatcttgagg 383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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