View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8069_low_14 (Length: 452)
Name: NF8069_low_14
Description: NF8069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8069_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 428
Target Start/End: Complemental strand, 7382702 - 7382280
Alignment:
| Q |
19 |
aagcaacttcttggtttaatggcttaagaaatctatttataaacactggcagctataaaatattatttctacaaacaaatatgcttaaactgcttt-aaa |
117 |
Q |
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| T |
7382702 |
aagcaacttcttggtttaatggcttaagaaatctatttataaacactggcagctataaaatattatttctacaaaaaaatatgcttaaactgcttttaaa |
7382603 |
T |
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| Q |
118 |
atttcttatttatgtgcttacaaa-------gagtgctacaaaatatatttttattgatttgttaaaaataattaatataa----aacgtggtataaatt |
206 |
Q |
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| T |
7382602 |
atttcttatttatgtgcttacaaattacaaagagtgctacaaaatatatttttattgatgtgttaaaaataattaatataattaaaacgtggtataaatt |
7382503 |
T |
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| Q |
207 |
tt-attgcgccgttattattcattgggtacagacaatattttatttcaaaacttgatcgtttctaatataatttacagtcgatgttataaactttttaat |
305 |
Q |
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| T |
7382502 |
tttattgcgccgttattattcattgggtacagacaatattttatttcaaaacttgatcgtttctaatataatttacagtcgatgttataaactttttaat |
7382403 |
T |
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| Q |
306 |
tgatttaaatttacatagtttttaaatatcaacttgagtttactcnnnnnnnntatcaacttgagtataatttattttttaaaagcaaactcaactacac |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7382402 |
tgatttaaatttacatagtttttaaatatcaacttgagtttactcaaaaaaaatatcaacttgagtataatttattttttaaaagcaaactcaactacac |
7382303 |
T |
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| Q |
406 |
atgacactgatacattaaagatg |
428 |
Q |
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| T |
7382302 |
atgacactgatacattaaagatg |
7382280 |
T |
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