View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8069_low_15 (Length: 439)
Name: NF8069_low_15
Description: NF8069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8069_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 168 - 426
Target Start/End: Original strand, 47312217 - 47312471
Alignment:
| Q |
168 |
atgttcacccaactcaattagtcaatcaagatgggagtttcatattctcctagagtctggtcttgaacatgatcatttttcatatattttaagggctaaa |
267 |
Q |
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| T |
47312217 |
atgttcacccaactcaattagtcaatcaagatgggagtttcatattctcctagagtctggccttgaacatgatcatttttcatatattttaagggctaaa |
47312316 |
T |
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| Q |
268 |
tcgaagatttcattcatatattttaaagacaaattttaatatttaggactaaattgaaaagatactattattaattttatggactaaactagtaataaat |
367 |
Q |
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| T |
47312317 |
tcgaagatttcattcatatattttaaagacaaattttaatatttaggactaaattgaaaagatactatt----attttatggactaaactagtaataaat |
47312412 |
T |
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| Q |
368 |
tgaaacaaattaagcacatgtactgataggataacaaatgaggaaggaacatcaataat |
426 |
Q |
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| T |
47312413 |
tgaaacaaattaagcacatgtactgataggataacaaatgaggaaggaacatcaataat |
47312471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 15 - 149
Target Start/End: Original strand, 47312099 - 47312233
Alignment:
| Q |
15 |
aatatcaaggcagaccaaaatgccaagttagggtttgagttgtcaaaattttgggctnnnnnnntcttcaaaaagtacaagttagttataaatatataat |
114 |
Q |
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| T |
47312099 |
aatatcaaggcagaccaaaatgccaagttagggtttgagttgtcaaaattttgggctaaaaaaatcttcaaaaagtacaagttagttataaatatataat |
47312198 |
T |
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| Q |
115 |
atgagattttagttttagatgttcacccaactcaa |
149 |
Q |
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| T |
47312199 |
atgagattttagttttagatgttcacccaactcaa |
47312233 |
T |
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