View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8069_low_17 (Length: 428)
Name: NF8069_low_17
Description: NF8069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8069_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 26920174 - 26919767
Alignment:
| Q |
1 |
aagtttaatgatttgaataaaaggtataagagagtgaatgatatacttggtaaaggaacagcttgtagagttgttgagaatcaaggtttgttggattcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26920174 |
aagtttaatgatttgaataaaaggtataagagagtgaatgatatacttggtaaaggaacagcttgtagagttgttgagaatcaaggtttgttggattcaa |
26920075 |
T |
|
| Q |
101 |
tggatttgtcacctaagatgaaagatgaagttaggaaattgcttaattctaaacatcttttctttagggaaatgtgtgcttatcataatagttgtggcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26920074 |
tggatttgtcacctaagatgaaagatgaagttaggaaattgcttaattctaaacatcttttctttagggaaatgtgtgcttatcataatagttgtggcca |
26919975 |
T |
|
| Q |
201 |
tggcggtgttggtacttctaatgttcaacatcaagtagagggtggaagtggaacagcaacaccacctcagaatcaacctcaacagcagcatcaacaacag |
300 |
Q |
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||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
26919974 |
tggtggtgttgctacttctaatgttcaacatcaagtagagggtggaagtggaacaacaacaccacctcagaatcaacctcaacaacagcatcaacaccag |
26919875 |
T |
|
| Q |
301 |
caccagcagcagaaccaacagcattgttttcattcatcagagaatggtgtagggagtttaggtgtttcaagaggagaaggattgaggatgttgaaaatag |
400 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26919874 |
caccagcagcagaaccaacaacattgttttcattcatcagagaatggtgtagggagtttaggtgtttcaagaggagaaggattgaggatgttgaaaatag |
26919775 |
T |
|
| Q |
401 |
gaagtgga |
408 |
Q |
| |
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|||||||| |
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| T |
26919774 |
gaagtgga |
26919767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 41825110 - 41825312
Alignment:
| Q |
1 |
aagtttaatgatttgaataaaaggtataagagagtgaatgatatacttggtaaaggaacagcttgtagagttgttgagaatcaaggtttgttggattcaa |
100 |
Q |
| |
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||||| ||||||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||| ||| |
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| T |
41825110 |
aagttcaatgatttgaacaaaaggtataaaagagttaatgatattcttggtaaaggaacagcttgtagagttgttgaaaatcaaactttgttggatacaa |
41825209 |
T |
|
| Q |
101 |
tggatttgtcacctaagatgaaagatgaagttaggaaattgcttaattctaaacatcttttctttagggaaatgtgtgcttatcataatagttgtggcca |
200 |
Q |
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|||||||||| | ||| ||||||| |||| ||| ||| | || |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |
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|
| T |
41825210 |
tggatttgtccgcaaagttgaaagaagaagctagaaaacttctgaattctaagcatcttttttttagagaaatgtgtgcttatcataatagttgtggcca |
41825309 |
T |
|
| Q |
201 |
tgg |
203 |
Q |
| |
|
||| |
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|
| T |
41825310 |
tgg |
41825312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 41909892 - 41909844
Alignment:
| Q |
4 |
tttaatgatttgaataaaaggtataagagagtgaatgatatacttggta |
52 |
Q |
| |
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|||||||| |||||||| ||||||||||| ||||||| |||||||||| |
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|
| T |
41909892 |
tttaatgacttgaataagaggtataagaggttgaatgagatacttggta |
41909844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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