View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8069_low_19 (Length: 405)
Name: NF8069_low_19
Description: NF8069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8069_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Complemental strand, 47312846 - 47312483
Alignment:
| Q |
18 |
tagccaataaaaagcaagaagatattaaactagatgcatgtttaaacaaagagaggaagtacttgagaagcaatgaagtctcacgtaacatcattcacct |
117 |
Q |
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| T |
47312846 |
tagccaataaaaagcaagaagatattaaactagatgcatgtttaaacaaagagaggaagtacttgagaagcaatgaagtctcacgtaacatcattcacct |
47312747 |
T |
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| Q |
118 |
aactttcattaactcaggtactacaaaaatcacatccctttaactggctcacacttccacagcacaacctagtactaaagtttcaaattcggttgtttgg |
217 |
Q |
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| T |
47312746 |
aactttcattaactcaggtactacaaaaatcacatccctttaactggctcacacttccacagcacaacctagtactaaagtttcaaattcggttgtttgg |
47312647 |
T |
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| Q |
218 |
tgacagccaacccataataccacataacaactctatatattgtgcccctattcttttaatttatacaacactgtgaaatcaagatgaagcttgcatttgc |
317 |
Q |
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| T |
47312646 |
tgacagccaacccttaataccacatcacaactctatatattatgcccctattcttttaatttatacaacactgtgaaatcaagatgaagcttgcatttgc |
47312547 |
T |
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| Q |
318 |
aatactccttcttgtcctcagctcctctttattggaagtctcatttgctggttctggtaagcca |
381 |
Q |
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| T |
47312546 |
aatactccttcttgtcctcagctcctctttattggaagtctcatttgctggttctggtaagcca |
47312483 |
T |
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