View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8069_low_2 (Length: 706)
Name: NF8069_low_2
Description: NF8069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8069_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 541; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 17 - 692
Target Start/End: Complemental strand, 4339467 - 4338791
Alignment:
| Q |
17 |
gaaaggtgactgattcataacatgcttcatcttttctatattcctaaagcagttttgatnnnnnnnnnttgtttaaacttagagaagctgagcaattttt |
116 |
Q |
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||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4339467 |
gaaagttgactgattcataacatgcttcatcatttctatattcctaaagcagttttgataaaaaaaaattgtttaaacttagagaagctgagcaattttt |
4339368 |
T |
|
| Q |
117 |
tctatactctgttatttagaaacttaatatggatcgaataaaacagtaacaaggaacaagacaaaacacaagaattcatgttcctcactaaccatgatac |
216 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4339367 |
tctatactctgttatttagaaacttaatatgaatcgaataaaacagtaacaaggagcaagacaaaacacaagaattcatgtccctcactaaccatgatac |
4339268 |
T |
|
| Q |
217 |
aattttttgtcaagagtacaaactacaaactatcaaaaatatcaaaatacnnnnnnnnnnnnnnacataaaaatattatcgctctatctctttagtattg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4339267 |
aattttttgtcaagagtacaaactacaaactatcaaaaatatcaaaatacttttttatttttttacataaaaatattatcgctctatctctttagtattg |
4339168 |
T |
|
| Q |
317 |
ttctatcttgttatgtattgttttttcctatcttgtgttgttctatccaatacttactcttttgcaatcaaacactcacataaggtgtgcagnnnnnnnn |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4339167 |
ttctatcttgttatgtattgttttttcctatcttgtgttgttctatccaatacttactcttttgcaatcaaacactcacataaggtgtgtagtttttttt |
4339068 |
T |
|
| Q |
417 |
n-cctggttactccagtgtatgtagtacagtaacctgtctgtaaatctttcttcatgttcatactaagaataagatgataaggatagaggagaaagaaag |
515 |
Q |
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| T |
4339067 |
ttcctggttactccagtgtatgtagtacagtcacctgtctgtaaatctttcttcatgttcatactaagaataagatgataaggatagaggagaaagaaag |
4338968 |
T |
|
| Q |
516 |
cttgagagcttaaagatgaaaaatactagaagggtgtcattatgattcaaagatacaaaattgaacagataaagcttatttataggagcaattagctttc |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4338967 |
cttgagagcttaaagatgaaaaatactagaagggtgtcattatgattcaaagatacaaaattgaacagataaagcttatttataggagcaattagctttc |
4338868 |
T |
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| Q |
616 |
tgagtaacataaaaaatcacatcttgaataacaatatccacttaaatcaaacatctccatatatcctcattattctt |
692 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4338867 |
tgagtaacataacaaatcacatcttgaataacaatatccacttaaatcaaacatctccatatatcctcattattctt |
4338791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 514 - 606
Target Start/End: Complemental strand, 4364903 - 4364809
Alignment:
| Q |
514 |
agcttgagagcttaaagatgaaaaatactagaagggtgtcattatgattcaaagatac-aaaattgaacagata-aagcttatttataggagcaa |
606 |
Q |
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||||||||||||| | |||||||||||||| |||| | |||||||||||||||||||| |||| |||||| ||| ||||||| |||||||||||| |
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| T |
4364903 |
agcttgagagcttgacgatgaaaaatactaaaaggatatcattatgattcaaagatacaaaaactgaacatatacaagcttacttataggagcaa |
4364809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 505 - 605
Target Start/End: Complemental strand, 4330866 - 4330767
Alignment:
| Q |
505 |
gagaaagaaagcttgagagcttaaagatgaaaaatactagaagggtgtcattatgattcaaagatacaaaattgaacagata-aagcttatttataggag |
603 |
Q |
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|||||||||||||||||||||| | || || |||||| |||| | |||| || |||||||||| ||||| |||||||||| ||||||||||||||||| |
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| T |
4330866 |
gagaaagaaagcttgagagcttgatgacgaggaatactctaagg-tatcatcat-attcaaagatgcaaaactgaacagatacaagcttatttataggag |
4330769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 15988139 - 15988197
Alignment:
| Q |
17 |
gaaaggtgactgattcataacatgcttcatcttttctatattcctaaagcagttttgat |
75 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
15988139 |
gaaaggtgactgattcataacatgcttcatctttactatattcctaaagcagttttgat |
15988197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 238 - 266
Target Start/End: Original strand, 31497725 - 31497753
Alignment:
| Q |
238 |
actacaaactatcaaaaatatcaaaatac |
266 |
Q |
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| T |
31497725 |
actacaaactatcaaaaatatcaaaatac |
31497753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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