View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8069_low_21 (Length: 398)
Name: NF8069_low_21
Description: NF8069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8069_low_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 14490485 - 14490104
Alignment:
| Q |
1 |
agagtagaattatatggacatgccttatttttatgattcttttgtgttatatgattttgaaggaaaatctcttgtattgatctttaattgggtggaataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14490485 |
agagtagaattatatggacatgccttatttttatgattcttttgtgttatatgattttgaaggaaaatctcttgtattgatctttaattgggtggaataa |
14490386 |
T |
|
| Q |
101 |
tttgttaatgataaatgatttgttgtatgatgtttttgacatgtttaggtttgagagagattttcaaaagaaacatgaaattctgaaagttactacttaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14490385 |
tttgttaatgataaatgatttgttgtatgatgtttttgacttgtttaggtttgagagagattttcaaaagaaacatgaaattctgaaagttactacttaa |
14490286 |
T |
|
| Q |
201 |
aacagttacagtgcgtgaattttcataatttattgtcttcaaattttaatatggaaccagttgaattgtgattatatatgtaagtttactaacttcagaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14490285 |
aacagttacagtgcgtgaattttcataatttattgtcttcaaattttaatatggaaccagttgaattgtgatt--atatgtaagtttactaacttcagaa |
14490188 |
T |
|
| Q |
301 |
aaatatatgaaattttcaaacttcaaatgactatccattcatagtttctattaattacagttctgcatatgtgcttgtattgat |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14490187 |
aaatatatgaaattttcaaacttcaaatgactatccattcatagtttctattaattacagttctgcatatgtgcttgtattgat |
14490104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 44510405 - 44510467
Alignment:
| Q |
34 |
tgattcttttgtgttatatgattttgaaggaaaatctcttgtattgatctttaattgggtgga |
96 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
44510405 |
tgattctactgtgttatatgattttgaagggaaatctcttgtgttgatcttcaattgggtgga |
44510467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University