View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8069_low_23 (Length: 346)
Name: NF8069_low_23
Description: NF8069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8069_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 3502797 - 3503125
Alignment:
| Q |
1 |
tcaatacaaagtatttgaaccaattatcatctctgatagaagcaaattctcgtatgaactttgaagaaattcttgatcaccttaagatgcaaatgtcttg |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3502797 |
tcaatacaaagtatttgaaccaattatcctctctgatagaagcaaattctcgtatgaactttgaagaaattcttaatcaccttaagatgcaaatgtcttg |
3502896 |
T |
|
| Q |
101 |
aggataagatttcaaattccctcgtaaagaatcaattttgaaattatcagatatgtccctttcagtattcagtgattccaataaacattccaaaaaatac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3502897 |
aggataagatttcaaattccctcgtaaagaatcaattttgaaattatcagatatgtctctttgagtattcagtgattccaataaacattccaaaaaatac |
3502996 |
T |
|
| Q |
201 |
aatcctgaaatacaatcaaacattgattcaatacctcaatatcacaatcgaatcaaaacttcaaagaaacatcaagtccaaaatacaaaaaggcaagtaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3502997 |
aatcctgaaatacaatcaaacattgattcaatacctcaatatcacaatcgaatcaaaacttcaaagaaacatcaagtccaaaatacaaaaaggcaagtaa |
3503096 |
T |
|
| Q |
301 |
accaaattacaaatacttactcatagaaa |
329 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
3503097 |
accaaattacaaatacttactcatagaaa |
3503125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 315
Target Start/End: Complemental strand, 47178154 - 47178065
Alignment:
| Q |
227 |
ttcaatacctcaatatcacaatcgaatcaaaacttcaaagaaacatcaagtccaaaatacaaaaaggcaagt-aaaccaaattacaaata |
315 |
Q |
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|||||||| || ||||||||| | ||| ||||||||||||||||||| | |||||| |||||| || ||||| || ||||||| |||||| |
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| T |
47178154 |
ttcaatacttcgatatcacaagcaaattaaaacttcaaagaaacatcgactccaaattacaaagagtcaagtgaacccaaatttcaaata |
47178065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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