View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8069_low_25 (Length: 284)
Name: NF8069_low_25
Description: NF8069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8069_low_25 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 44691547 - 44691830
Alignment:
| Q |
1 |
atcaatctcaagtggctatgaaagaaggttttgggaaatttgaaaaggtgcttcagccgggatgccattgcatgccatggttccttggaaaacgaattgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44691547 |
atcaatctcaagtggctatgaaagaaggttttgggaaatttgaaaaggtgcttcatccgggatgccattgcatgccatggttccttggaaaacgaattgc |
44691646 |
T |
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| Q |
101 |
cggtcatctctctcttcggctacaacaattggatatcaaatgtgagaccaagacaaaggttcgtttgttactgtctcaaacttcaattaaaccaaatctt |
200 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| | |||||||||| ||| |||||||||||| |||||||||| |
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| T |
44691647 |
cggtcatctctctcttcgggttcaacaattggatatcaaatgtgagaccaagacaaaggctggtttgttactttctaaaacttcaattataccaaatctt |
44691746 |
T |
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| Q |
201 |
catgtcattccatgcttatcaatcacttggatatactttctctatggccaggataatttttattaggtgtcatcctggtgctat |
284 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
44691747 |
catgccattccatgcttatcaatcacatggatatactttctctttggccaggataatttttattaggtatcatcctggtgctat |
44691830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 44681873 - 44682091
Alignment:
| Q |
1 |
atcaatctcaagtggctatgaaagaaggttttgggaaatttgaaaaggtgcttcagccgggatgccattgcatgccatggttccttggaaaacgaattgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44681873 |
atcaatctcaagtggctatgaaagaaggttttggaaaatttgaaaaggtgcttcagccgggatgccattgcatgccatggttccttggaaaacgaattgc |
44681972 |
T |
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| Q |
101 |
cggtcatctctctcttcggctacaacaattggatatcaaatgtgagaccaagacaaaggttcgtttgttactgtctcaaacttcaattaaaccaaatctt |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
44681973 |
tggtcatctctctcttcgggtacaacaattggatatcaagtgtgagacaaagacaaag----gtttgttactgtctcaaacatcaattaaaccaaatctt |
44682068 |
T |
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| Q |
201 |
catgtcattccatgcttatcaat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
44682069 |
catgtcattccatgcttatcaat |
44682091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 44652859 - 44653134
Alignment:
| Q |
1 |
atcaatctcaagtggctatgaaagaaggttttgggaaatttgaaaaggtgcttcagccgggatgccattgcatgccatggttccttggaaaacgaattgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44652859 |
atcaatctcaagtggctatgaaagaaggttttggaaaatttgaaaaggtgcttcagccgggatgccattgcatgccatggttccttggaaaaagaattgc |
44652958 |
T |
|
| Q |
101 |
cggtcatctctctcttcggctacaacaattggatatcaaatgtgagaccaagacaaaggttcgtttgttactgtctcaaacttcaattaaaccaaatctt |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| | || |
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| T |
44652959 |
tggtcatctctctcttcgggtacaacaattggatatcaaatgtgagaccaagacaaaggttc----gttacggtctcaaacatcaattaaaccaagtgtt |
44653054 |
T |
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| Q |
201 |
catgtcattccatgcttatcaatcacttggatatactttctctatggccaggataatttttattaggtgtcatcctggtgctat |
284 |
Q |
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|||||||||||||||||| |||| || | | ||||||||| | |||| ||||| || || |||| ||||||||||||||||| |
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| T |
44653055 |
catgtcattccatgcttaccaataacat--aaatactttctttttggctaggat--ttgtttttagttgtcatcctggtgctat |
44653134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 44637471 - 44637251
Alignment:
| Q |
1 |
atcaatctcaagtggctatgaaagaaggttttgggaaatttgaaaaggtgcttcagccgggatgccattgcatgccatggttccttggaaaacgaattgc |
100 |
Q |
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|||||||| ||||||||||||||| |||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44637471 |
atcaatctacagtggctatgaaagagggttttggaaaatttgaagaggtgcttcagccaggatgccattgcatgccatggttccttggaaaacgaattgc |
44637372 |
T |
|
| Q |
101 |
cggtcatctctctcttcggctacaacaattggatatcaaatgtgagaccaagacaaaggttcgtttgttactgtctcaaacttcaattaaaccaaatctt |
200 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| |
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| T |
44637371 |
tggtcatctctctcttcggctacagcaattggatataaaatgtgagaccaagacaaaggttcgtttgttactgtctaaaacttcaatttaacgaaatctt |
44637272 |
T |
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| Q |
201 |
catgtcattccatgcttatca |
221 |
Q |
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|| ||||||||||| |||||| |
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| T |
44637271 |
cacgtcattccatgattatca |
44637251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 12 - 211
Target Start/End: Original strand, 44631382 - 44631578
Alignment:
| Q |
12 |
gtggctatgaaagaaggttttgggaaatttgaaaaggtgcttcagccgggatgccattgcatgccatggttccttggaaaacgaattgccggtcatctct |
111 |
Q |
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|||||||||| |||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44631382 |
gtggctatgagagaaggttttggaaaatttgaagaggtgcttcagccaggatgccattgcatgccatggttccttggaaaacgaattgccggtcatctct |
44631481 |
T |
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| Q |
112 |
ctcttcggctacaacaattggatatcaaatgtgagaccaagacaaaggttcgtttgttactgtctcaaacttcaattaaaccaaatcttcatgtcattcc |
211 |
Q |
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| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
44631482 |
cccttcggctacaacaattggatataaaatgtgagaccaagacaaaggt---tttgttactgtctcaaactttaattcaaccaaatcttcatgtcattcc |
44631578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 284
Target Start/End: Original strand, 44631639 - 44631667
Alignment:
| Q |
256 |
atttttattaggtgtcatcctggtgctat |
284 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
44631639 |
atttttattaggtgtcatcctggtgctat |
44631667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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