View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8069_low_29 (Length: 262)
Name: NF8069_low_29
Description: NF8069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8069_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 20 - 255
Target Start/End: Complemental strand, 51160921 - 51160686
Alignment:
| Q |
20 |
cgtatctctgccggttcatctttcccaagaccaccaccggttcgcagtctcgttaaaccgatcctcaccgaaccttggccgctacgtagaaggtggaggc |
119 |
Q |
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| T |
51160921 |
cgtatctctgccggttcatctttcccaagaccaccaccggttcgcagtctcgttaaaccgatcctcaccgaaccttggccgctacgtaaaaggtggaggc |
51160822 |
T |
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| Q |
120 |
acgcgtcaacgaggagcgtgggaccggttcaagcgagttcgcgcgcagatgactcagcaccgttcgagatgtcggttgaaaacgcgctgaagctgttagg |
219 |
Q |
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| T |
51160821 |
acgcgtcaacgaggagcgtgggaccggttcaagcgagttcgcgcgcagatgactcagcaccgttcgagatgtcggttgaaaacgcgctgaagctgttagg |
51160722 |
T |
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| Q |
220 |
tgtatcggaaggtgcttcctttgatgatattcttcg |
255 |
Q |
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|||||||||||||||||||||||||||||| ||||| |
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| T |
51160721 |
tgtatcggaaggtgcttcctttgatgatatacttcg |
51160686 |
T |
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