View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8069_low_32 (Length: 243)
Name: NF8069_low_32
Description: NF8069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8069_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 2793713 - 2793937
Alignment:
| Q |
1 |
agactggtgggggtttttcttctacctttgtaataataatcaaaactattgttgttaaaatcctgatcagaatcgttaaatcctacagttttgcgacttt |
100 |
Q |
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| T |
2793713 |
agactggtgggggtttttcttctacctttgtaataataatcaaaactattgttgttaaaatcctgatcagaatcgttaaatcctacagttttgcgacttt |
2793812 |
T |
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| Q |
101 |
gttcttcctaaccaatctgaatcttaagtggaatcctaaactatgcaaagtctgttcaaaatcgtttatgtttaagcgattttgttctgccttataattg |
200 |
Q |
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| T |
2793813 |
gttcttcctaaccaatctgaatcttaagtggaatcctaaactatgcaaagtctgttcaaaatcgtttatgtttaagcgattttgttctgccttataattg |
2793912 |
T |
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| Q |
201 |
gcgcattcgtgatgcatgtaatatt |
225 |
Q |
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|||| |||||||||||||||||||| |
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| T |
2793913 |
gcgcgttcgtgatgcatgtaatatt |
2793937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 3640549 - 3640469
Alignment:
| Q |
69 |
agaatcgttaaatcctacagttttgcgactttgttcttcctaaccaatctgaatcttaagtggaatcctaaactatgcaaa |
149 |
Q |
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| T |
3640549 |
agaatcctaaaatcctagggttttgcaagtttgctctgccttaccaatctgaatcctgagtagaatcctaaattatgcaaa |
3640469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 19449757 - 19449704
Alignment:
| Q |
48 |
attgttgttaaaatcctgatcagaatcgttaaatcctacagttttgcgactttg |
101 |
Q |
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| T |
19449757 |
attgttgttaaaatcctgatcagaatcgttaaatcctacgcttttgcgattttg |
19449704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 17768265 - 17768397
Alignment:
| Q |
48 |
attgttgttaaaatcctgatcagaatcgttaaatcctacagttttgcgactttgt--------tcttcctaaccaatctgaatcttaagtggaatcctaa |
139 |
Q |
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|||||||||||| |||| |||||||||||| |||||||| |||||||| |||| ||| ||||||| ||||||||| | || ||||||||| |
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| T |
17768265 |
attgttgttaaagtcctaatcagaatcgttgaatcctacgcttttgcgattttgcgattctgctctgcctaaccgatctgaatcctgagcagaatcctaa |
17768364 |
T |
|
| Q |
140 |
actatgcaaagtctgttcaaaatcgtttatgtt |
172 |
Q |
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| T |
17768365 |
actatgcaaaatctgttcgaaatcatttatgtt |
17768397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 1063177 - 1063237
Alignment:
| Q |
154 |
gttcaaaatcgtttatgtttaagcgattttgttctgccttataattggcgcattcgtgatg |
214 |
Q |
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|||| |||| |||||||||||||||||||||| ||||||||||||||||| | ||||||| |
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| T |
1063177 |
gttcgaaattgtttatgtttaagcgattttgtgttgccttataattggcgcgtccgtgatg |
1063237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 9323710 - 9323748
Alignment:
| Q |
176 |
gcgattttgttctgccttataattggcgcattcgtgatg |
214 |
Q |
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||||||||| |||||||||||||||||||||| |||||| |
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| T |
9323710 |
gcgattttgctctgccttataattggcgcatttgtgatg |
9323748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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