View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8069_low_33 (Length: 236)
Name: NF8069_low_33
Description: NF8069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8069_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 11 - 170
Target Start/End: Complemental strand, 51707400 - 51707257
Alignment:
| Q |
11 |
agaatatatatttgtaagtaaacaattatctcattagagtatgaggatttgaaagtacaaaattagtatacaattatcacaattattaagttgtgtaatg |
110 |
Q |
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| T |
51707400 |
agaatatatatttgtaagtaaacaattatctcattag----------------agtacaaaattagtatacaattatcacaattattaagttgtgtaatg |
51707317 |
T |
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| Q |
111 |
actagtaacttacaaatattagataatttggtcatttatcttacaacacttagactcttg |
170 |
Q |
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| T |
51707316 |
actagtaacttacaaatattagatactttggtcatttatcttacaacacttagactcttg |
51707257 |
T |
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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 30715276 - 30715196
Alignment:
| Q |
11 |
agaatatatatttgtaagtaaacaattatctcatta--gagtatgaggatttgaaagtacaaaattagtatacaattatca |
89 |
Q |
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| T |
30715276 |
agaatatatatttgtaagtaaacaattatctcactaaagagtatgaagatttgaaaatacaaaattagtatacaattatca |
30715196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 39394425 - 39394466
Alignment:
| Q |
115 |
gtaacttacaaatattagataatttggtcatttatcttacaa |
156 |
Q |
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| T |
39394425 |
gtaacttacaaatattagatattttgatcatttatgttacaa |
39394466 |
T |
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