View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8069_low_37 (Length: 207)
Name: NF8069_low_37
Description: NF8069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8069_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-106
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 37465865 - 37465668
Alignment:
| Q |
1 |
tggcccctgatttgcatattcttgtttgacatccgtatgaaagcacaatgaggttggtttttgtacaacacttccaaagaaaagttcacgttgagctaga |
100 |
Q |
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| T |
37465865 |
tggcccctgatttgcatattcttgtttgacatccgtatgaaagcacaatgaggttggtttttgtacaacacttccaaagaaaagttcacgttgagctaga |
37465766 |
T |
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| Q |
101 |
agtttaaacattgtataggatagtatctctttagatgatttattgagtatctctctgcatcttttcggtagaacttaaagaaaatctttattctctgc |
198 |
Q |
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| T |
37465765 |
agtttaaacattgtataggatagtatctctttagataatttattgagtatctctctgcatcttttcggtagaacttaaagaaaatctttattctctgc |
37465668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 8576333 - 8576392
Alignment:
| Q |
6 |
cctgatttgcatattcttgtttgacatccgtatgaaagcacaatgaggttggtttttgta |
65 |
Q |
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| T |
8576333 |
cctgatttgcatattcttgttggacatgcttatgaaagcacaatgaggttggttattgta |
8576392 |
T |
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