View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8069_low_5 (Length: 620)
Name: NF8069_low_5
Description: NF8069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8069_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 510; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Original strand, 47285936 - 47286457
Alignment:
| Q |
1 |
cgtttatctgatttggtttctgatgaactgaaaattaccggtgttaaaacaggttgacatccgttttcccatccagctgtacctgatccagcgccgttaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47285936 |
cgtttatctgatttggtttctgatgaacggaaaattaccggtgttaaaacaggttgacgtccgttttcccatccagctgtacctgatccagcgccgttaa |
47286035 |
T |
|
| Q |
101 |
ttataataacatcgccgttaggtagaattaacatgtctcccattactcttgccattggcatattctcaataatccaactaggattcgaatccgttacttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47286036 |
ttataataacatcgccgttaggtagaattaacatgtctcccattactcttgccattggcatattctcaataatccaactaggattcgaatccgttacttt |
47286135 |
T |
|
| Q |
201 |
gagaaatccacatgttttaagtgctggcatgaagttctttccctttgcagcttcgaatgatcctcgaggtgctcccccacagatcatgattgtagcttcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47286136 |
gagaaatccacatgttttaagtgctggcatgaagttctttccctttgcagcttcgaatgatcctcgaggtgctcccccacagatcatgattgtagcttcc |
47286235 |
T |
|
| Q |
301 |
atggagatttggttttcgtctaatggaagaagaacagatgatcctgaactaggatagttatgaggatcaccacctggaatctcaggaaattctttaacag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47286236 |
atggagatttggttttcgtctaatggaagaagaacagatgatcctgaactaggatagttatgaggatcaccacctggaatctcaggaaattctttaacaa |
47286335 |
T |
|
| Q |
401 |
cgacgttttgtttgtaatcaaataaaatggatcgtgtgtttgcgaaaatgaaaaggtttccattaggtagaagatgaacgaatggatataagttgttttc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47286336 |
cgacgttttgtttgtaatcaaataaaatggatcgtgtgtttgcgaaaatgaaaaggtttccattaggtagaagatgaacgaatggatataagttgttttc |
47286435 |
T |
|
| Q |
501 |
gcttggatcgttagtttcttgg |
522 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
47286436 |
gcttggatcgttagtttcttgg |
47286457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 568 - 601
Target Start/End: Original strand, 47286503 - 47286536
Alignment:
| Q |
568 |
gtcgttgttttaggaatgaattcatagttgaatt |
601 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
47286503 |
gtcgttgttttaggaatgaattcatagttgaatt |
47286536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University