View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8069_low_8 (Length: 594)

Name: NF8069_low_8
Description: NF8069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8069_low_8
NF8069_low_8
[»] chr8 (10 HSPs)
chr8 (13-455)||(5048195-5048654)
chr8 (510-577)||(5048073-5048140)
chr8 (81-181)||(37929107-37929207)
chr8 (78-181)||(8462509-8462612)
chr8 (82-147)||(33191203-33191268)
chr8 (52-194)||(29216926-29217067)
chr8 (84-122)||(41255039-41255077)
chr8 (81-154)||(31686427-31686500)
chr8 (78-122)||(21523919-21523963)
chr8 (82-122)||(38685819-38685859)
[»] chr4 (12 HSPs)
chr4 (13-402)||(20510153-20510561)
chr4 (78-235)||(29969789-29969947)
chr4 (52-194)||(22653274-22653416)
chr4 (85-179)||(25130444-25130538)
chr4 (75-181)||(9831384-9831490)
chr4 (82-179)||(27270006-27270103)
chr4 (90-178)||(21204906-21204994)
chr4 (85-262)||(52577902-52578080)
chr4 (82-147)||(10552672-10552737)
chr4 (89-181)||(30972395-30972487)
chr4 (85-147)||(13137114-13137176)
chr4 (82-147)||(42527342-42527407)
[»] chr5 (8 HSPs)
chr5 (13-402)||(12863418-12863827)
chr5 (13-402)||(12831443-12831852)
chr5 (55-194)||(27482644-27482783)
chr5 (62-122)||(39839963-39840023)
chr5 (58-181)||(19314979-19315102)
chr5 (76-149)||(26778713-26778786)
chr5 (82-167)||(4396672-4396757)
chr5 (69-122)||(32252178-32252231)
[»] chr3 (6 HSPs)
chr3 (13-311)||(33692831-33693130)
chr3 (79-181)||(25845648-25845750)
chr3 (69-194)||(14788854-14788979)
chr3 (82-154)||(36803185-36803257)
chr3 (52-118)||(25408827-25408893)
chr3 (81-147)||(26285216-26285282)
[»] chr7 (9 HSPs)
chr7 (13-400)||(41529148-41529558)
chr7 (52-195)||(17116373-17116516)
chr7 (108-203)||(4997969-4998064)
chr7 (52-181)||(38153905-38154034)
chr7 (73-181)||(34237154-34237262)
chr7 (73-118)||(16560155-16560200)
chr7 (73-118)||(16605462-16605507)
chr7 (82-147)||(40616734-40616799)
chr7 (82-114)||(4997256-4997288)
[»] chr1 (7 HSPs)
chr1 (53-275)||(34703453-34703676)
chr1 (54-181)||(6723683-6723810)
chr1 (73-181)||(36098611-36098719)
chr1 (52-179)||(44675097-44675224)
chr1 (85-181)||(12688178-12688274)
chr1 (84-122)||(52251400-52251438)
chr1 (56-181)||(10686159-10686284)
[»] chr2 (15 HSPs)
chr2 (58-273)||(37738061-37738278)
chr2 (52-179)||(9840768-9840895)
chr2 (89-194)||(44735982-44736087)
chr2 (82-181)||(39117418-39117517)
chr2 (52-193)||(27009186-27009327)
chr2 (58-274)||(27708162-27708379)
chr2 (53-172)||(18766679-18766798)
chr2 (52-181)||(36176612-36176740)
chr2 (53-179)||(30505717-30505843)
chr2 (82-147)||(24739851-24739916)
chr2 (79-178)||(33645833-33645932)
chr2 (82-147)||(841548-841613)
chr2 (73-122)||(45131117-45131166)
chr2 (69-149)||(38409019-38409099)
chr2 (82-122)||(40426926-40426966)
[»] chr6 (9 HSPs)
chr6 (52-170)||(2682773-2682891)
chr6 (84-178)||(12688190-12688284)
chr6 (74-194)||(34714902-34715022)
chr6 (83-209)||(27105243-27105369)
chr6 (83-209)||(27147052-27147178)
chr6 (82-147)||(32533064-32533129)
chr6 (85-154)||(11324494-11324563)
chr6 (73-122)||(17292757-17292806)
chr6 (81-122)||(18672093-18672134)


Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 13 - 455
Target Start/End: Complemental strand, 5048654 - 5048195
Alignment:
Q  13 aatatttacaatagaaatagaacaacaattaaaataggtagaaaaaactattaacatatacccagcatggtgaacggactaagccaccaaccatgaaagt 112  Q
    ||||||||||| |||||||||| || |||||||||||| |||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||    
T  5048654 aatatttacaacagaaatagaataaaaattaaaataggcagaaaaaactattaacctatgcccagtatggtgaacggactaagccaccaaccatgaaagt 5048555  T
Q  113 tgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaatcttatcaaccacctttaataccgagcaagttttatccgtaaattg 212  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5048554 tgaagggaagcgtatttaatttcaccttcaaccacataaaagagaggggcttaatcttatcaacgacctttaataccgagcaagttttatccgtaaattg 5048455  T
Q  213 catgttaatttttctttccagatctcccagactgtagcaaaccagatgacttgtgaaattgattgacggacccttagtgaaccaccatagtagctgaa-- 310  Q
    | ||||| |||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||| |||||||||||  | | ||||      
T  5048454 cctgttattttttctttccaaatctcccagactgtagcaaaccaaatgacctgtgaaattga-tgacggacccttactgaaccaccatgatcgttgaact 5048356  T
Q  311 ----------------taaattttgaggggcaactgcagatatgcccagccatccatacattaaatgccagacagaaccaaagaaactagagtgtaataa 394  Q
                    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||| |||||||||| ||||||||||    
T  5048355 gaataaaatgatcccgtaaattttgaggggcaactgcagatatgcctagccatccatacattaaatgtcagacacaactaaagaaactacagtgtaataa 5048256  T
Q  395 taagtgatgaatgaaataattgaaatggtaattaacaaccatcaataattttcacaactag 455  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5048255 taagtgatgaatgaaataattgaaatggtaattaacaaccatcaataattttcacaactag 5048195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 510 - 577
Target Start/End: Complemental strand, 5048140 - 5048073
Alignment:
Q  510 gacatagatgattatgtgggcctggtgtcatgtgcacgtgggtgtcaacttcatatcaccctcgagct 577  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5048140 gacatagatgattatgtgggcctggtgtcatgtgcacgtgggggtcaacttcatatcaccctcgagct 5048073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 37929207 - 37929107
Alignment:
Q  81 ggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaatcttatcaaccacc 180  Q
    |||||||||||||||||||||||||||| |||| |||||||| |||  ||||||||| ||||||||| |||| | ||| || |||||| |||| ||||||    
T  37929207 ggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccacctaaatgcgagagacttaatcctatcgaccacc 37929108  T
Q  181 t 181  Q
    |    
T  37929107 t 37929107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 78 - 181
Target Start/End: Original strand, 8462509 - 8462612
Alignment:
Q  78 catggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaatcttatcaacc 177  Q
    |||||| ||| |||||||||||||||||||| | ||||||||||| | |  ||||||| | ||||||||||| || | ||| || |||||||||||||||    
T  8462509 catggtaaacagactaagccaccaaccatgataattgaagggaagagaagcaaatttcgccttcaaccacatgaatgtgagtgacttaatcttatcaacc 8462608  T
Q  178 acct 181  Q
    ||||    
T  8462609 acct 8462612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 33191203 - 33191268
Alignment:
Q  82 gtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccac 147  Q
    ||||||||||||||||||||||||||| | ||||||||||| |||| ||||||||  |||||||||    
T  33191203 gtgaacggactaagccaccaaccatgataattgaagggaagagtatcaaatttcaacttcaaccac 33191268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 194
Target Start/End: Complemental strand, 29217067 - 29216926
Alignment:
Q  52 agaaaaaactattaacatatacccagcatggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataa 151  Q
    ||||| |||||||| | |||  |||||||||| |||||||||||| ||| |||||   | | ||||||||| | |  ||||||||| |||||||||||||    
T  29217067 agaaataactattagcctatgtccagcatggtaaacggactaagc-acctaccatagcaatggaagggaagagaagcaaatttcaccttcaaccacataa 29216969  T
Q  152 aagagagggagttaatcttatcaaccacctttaataccgagca 194  Q
    | | |||  | ||||||||||| ||||||| ||  ||||||||    
T  29216968 acgcgagatatttaatcttatccaccacctgtatcaccgagca 29216926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 41255039 - 41255077
Alignment:
Q  84 gaacggactaagccaccaaccatgaaagttgaagggaag 122  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  41255039 gaacggactaagccaccaaccatgatagttaaagggaag 41255077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 31686427 - 31686500
Alignment:
Q  81 ggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaag 154  Q
    ||||||||||||||||| ||| |||||  |||| |||||||| |||  ||||||| | ||||||||| ||||||    
T  31686427 ggtgaacggactaagccgccacccatggtagttaaagggaagagtaggaaatttctccttcaaccacctaaaag 31686500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 21523963 - 21523919
Alignment:
Q  78 catggtgaacggactaagccaccaaccatgaaagttgaagggaag 122  Q
    ||||||||| | |||||| |||||||||||| |||||||||||||    
T  21523963 catggtgaaggaactaagtcaccaaccatgatagttgaagggaag 21523919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 38685859 - 38685819
Alignment:
Q  82 gtgaacggactaagccaccaaccatgaaagttgaagggaag 122  Q
    ||||||||||||| ||||||||||||| |||| ||||||||    
T  38685859 gtgaacggactaatccaccaaccatgatagttaaagggaag 38685819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 13 - 402
Target Start/End: Complemental strand, 20510561 - 20510153
Alignment:
Q  13 aatatttacaatagaaatagaacaacaattaaaataggtagaaaaaactattaacatatacccagcatggtgaacggactaagccaccaaccatgaaagt 112  Q
    ||||||||||||||||| ||| ||| || ||||||| | |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |    
T  20510561 aatatttacaatagaaacagagcaaaaactaaaataagcagaaaaaactattaacctatgcccagcatggtgaacggactaagccaccaaccatgaaaat 20510462  T
Q  113 tgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaatcttatcaaccacctttaataccgagcaagttttatccgtaaattg 212  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20510461 tgaagggaagcgtgttaaatttcaccttcaaccacataaaagagatggacttaatcttatcaaccacctgtaataccgagcaagttttatccgtaaattg 20510362  T
Q  213 catgttaatt-tttctttccagatctcccagactgtagcaaaccagatgacttgtgaaattgattgacggacccttagtgaaccaccatagtagctgaa- 310  Q
    ||||||  || ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||  ||||||||||| |||||||||     
T  20510361 catgttgtttctttctttccagatctcctagactgtagcaaaccagatgacctgtgaaattgattgacgaacccttgttgaaccaccatggtagctgaac 20510262  T
Q  311 -----------------taaattttgaggggcaactgcagatatgcccagccatccatacattaaatgccagacagaaccaaagaaactagagtgtaata 393  Q
                     |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||    
T  20510261 tgaataaaatgatcccgtaaattttgaggggtaactgcagatatgcccagccatccataaattaaatgccagacagaaccaaagaaattacagtgtaata 20510162  T
Q  394 ataagtgat 402  Q
    |||||||||    
T  20510161 ataagtgat 20510153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 78 - 235
Target Start/End: Complemental strand, 29969947 - 29969789
Alignment:
Q  78 catggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaatcttatcaacc 177  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||| ||| |||||||| | ||||||||||||||||   |||| ||| |||||||||||    
T  29969947 catggtgaacggactaagccaccaaccataaaagtagaagggaagagtagtaaatttcgccttcaaccacataaaagtatgggacttattcttatcaacc 29969848  T
Q  178 acctttaataccgagcaagttttatccgtaaattgcatgttaatt-tttctttccagat 235  Q
    |||| ||||| |||||| |||||||| |||||  || ||||| || |||||||||||||    
T  29969847 acctgtaatatcgagcatgttttatctgtaaaaagcctgttatttctttctttccagat 29969789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 52 - 194
Target Start/End: Complemental strand, 22653416 - 22653274
Alignment:
Q  52 agaaaaaactattaacatatacccagcatggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataa 151  Q
    ||||| ||||| || | ||||| ||||||||| ||| |||||||||||||||||||| | ||||||| ||    |  ||||||| | |||||||||||||    
T  22653416 agaaataactaatagcctatactcagcatggtaaacagactaagccaccaaccatgataattgaaggtaatgtaagcaaatttcgccttcaaccacataa 22653317  T
Q  152 aagagagggagttaatcttatcaaccacctttaataccgagca 194  Q
    | | ||| || ||||||||||||||||||| || |||||||||    
T  22653316 atgtgagcgatttaatcttatcaaccacctgtattaccgagca 22653274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 25130444 - 25130538
Alignment:
Q  85 aacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaatcttatcaaccac 179  Q
    |||||||||||||||||||||||| |||||| || ||| |||  ||||||| | ||||||||||| |||| |||||| || |||||||| |||||    
T  25130444 aacggactaagccaccaaccatgatagttgagggaaagagtagcaaatttctccttcaaccacatgaaagcgagggacttgatcttatcgaccac 25130538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 75 - 181
Target Start/End: Complemental strand, 9831490 - 9831384
Alignment:
Q  75 cagcatggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaatcttatca 174  Q
    |||||| |||||||||||||||||||| |||||| | ||||||||||| |||   |||||| | ||||||||| ||||||  || || || ||||||||     
T  9831490 cagcatagtgaacggactaagccaccagccatgataattgaagggaagtgtaacgaatttcgccttcaaccacctaaaagcaagagacttgatcttatcc 9831391  T
Q  175 accacct 181  Q
    |||||||    
T  9831390 accacct 9831384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 82 - 179
Target Start/End: Original strand, 27270006 - 27270103
Alignment:
Q  82 gtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaatcttatcaaccac 179  Q
    ||||| ||||||||||||||||||||| | ||||||||||| | |  ||||||| | ||||||||||| |||| ||  || ||||| |||||||||||    
T  27270006 gtgaatggactaagccaccaaccatgataattgaagggaagtgaaggaaatttcgccttcaaccacatgaaagtgattgacttaattttatcaaccac 27270103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 21204906 - 21204994
Alignment:
Q  90 actaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaatcttatcaacca 178  Q
    ||||||||||||||||||| | ||||||||||| | |  ||||||| ||||||||||||| |||| ||  || ||||| ||||||||||    
T  21204906 actaagccaccaaccatgataattgaagggaagtgaagaaaatttcgcattcaaccacatgaaagtgattgacttaattttatcaacca 21204994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 262
Target Start/End: Complemental strand, 52578080 - 52577902
Alignment:
Q  85 aacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaatcttatcaaccaccttta 184  Q
    |||| ||||||||||||||||||| | ||||||||||| |    ||| ||||| ||||||||| ||||||  ||||| ||||||||||| | |||||  |    
T  52578080 aacgcactaagccaccaaccatgataattgaagggaagagatacaaacttcaccttcaaccacgtaaaagcaagggacttaatcttatctatcacctgaa 52577981  T
Q  185 ataccgagcaagttttatccgtaaattgcatgttaatt-tttctttccagatctcccagactgtagcaaaccagatgac 262  Q
      |||||||||  ||||||  | ||  || ||||| || |||| |||||||| ||||| || ||||||||||| |||||    
T  52577980 gaaccgagcaaactttatcattgaaaagcctgttatttctttccttccagatttcccacaccgtagcaaaccaaatgac 52577902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 10552737 - 10552672
Alignment:
Q  82 gtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccac 147  Q
    ||||||||||||||||||||||||||| |||| |||||||| |||  | | ||||| |||||||||    
T  10552737 gtgaacggactaagccaccaaccatgatagttaaagggaagagtagcatacttcaccttcaaccac 10552672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 181
Target Start/End: Original strand, 30972395 - 30972487
Alignment:
Q  89 gactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaatcttatcaaccacct 181  Q
    ||||||||||||| |||||| ||||||||||||| | |  ||||||| | |||| |||||| ||||  || || ||||| |||||||||||||    
T  30972395 gactaagccaccagccatgatagttgaagggaagagaaggaaatttcgccttcagccacatgaaagtcagcgacttaattttatcaaccacct 30972487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 13137176 - 13137114
Alignment:
Q  85 aacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccac 147  Q
    |||||||||||||||||||||||| | ||||||  ||| |||  ||||||||| |||||||||    
T  13137176 aacggactaagccaccaaccatgataattgaagaaaagagtagcaaatttcaccttcaaccac 13137114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 42527342 - 42527407
Alignment:
Q  82 gtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccac 147  Q
    ||||||||| ||||||||||||||||| | ||| | ||||| |||  ||||||||| |||||||||    
T  42527342 gtgaacggattaagccaccaaccatgataattggaaggaagagtagaaaatttcaccttcaaccac 42527407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 402
Target Start/End: Original strand, 12863418 - 12863827
Alignment:
Q  13 aatatttacaatagaaatagaacaacaattaaaataggtagaaaa-aactattaacatatacccagcatggtgaacggactaagccaccaaccatgaaag 111  Q
    ||||||||||||| ||| ||| ||| || ||||||| | | |||| |||||||||| ||| |||| ||| |||||||||||||||||||||||||||||     
T  12863418 aatatttacaataaaaacagagcaaaaactaaaataagcaaaaaaaaactattaacctatgcccaacatagtgaacggactaagccaccaaccatgaaaa 12863517  T
Q  112 ttgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaatcttatcaaccacctttaataccgagcaagttttatccgtaaatt 211  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12863518 ttgaagggaagcgtgttaaatttcaccttcaaccacataaaagagatggacttaatcttatcaaccacctgtaataccgagcaagttttatccgtaaatt 12863617  T
Q  212 gcatgttaatt-tttctttccagatctcccagactgtagcaaaccagatgacttgtgaaattgattgacggacccttagtgaaccaccatagtagctgaa 310  Q
    |||||||  || ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||  ||||||||||| |||||||||    
T  12863618 gcatgttgtttctttctttccagatctcctagactgtagcaaaccagatgacctgtgaaattgattgacgaacccttgttgaaccaccatggtagctgaa 12863717  T
Q  311 ------------------taaattttgaggggcaactgcagatatgcccagccatccatacattaaatgccagacagaaccaaagaaactagagtgtaat 392  Q
                      |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||    
T  12863718 ctgaataaaatgatcccgtaaattttgaggggtaactgcagatatgcccagccatccataaattaaatgccagacagaaccaaagaaattacagtgtaat 12863817  T
Q  393 aataagtgat 402  Q
    ||||||||||    
T  12863818 aataagtgat 12863827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 13 - 402
Target Start/End: Original strand, 12831443 - 12831852
Alignment:
Q  13 aatatttacaatagaaatagaacaacaattaaaataggtagaaaa-aactattaacatatacccagcatggtgaacggactaagccaccaaccatgaaag 111  Q
    ||||||||||||| ||| ||| ||| || ||||||| | | |||| |||||||||| ||| |||| ||| |||||||||||||||||||||||||||||     
T  12831443 aatatttacaataaaaacagagcaaaaactaaaataagcaaaaaaaaactattaacctatgcccaacatagtgaacggactaagccaccaaccatgaaaa 12831542  T
Q  112 ttgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaatcttatcaaccacctttaataccgagcaagttttatccgtaaatt 211  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||  || ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12831543 ttgaagggaagcgtgttaaatttcaccttcaaccacataaaagagatcgacttaatcttatcaaccacctgtaataccgagcaagttttatccgtaaatt 12831642  T
Q  212 gcatgttaatt-tttctttccagatctcccagactgtagcaaaccagatgacttgtgaaattgattgacggacccttagtgaaccaccatagtagctgaa 310  Q
    |||||||  || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||  ||||||||||| |||||||||    
T  12831643 gcatgttgtttctttctttccagatctcccagactgtagcaaaccagatgacctgtgaaattgattgacgaacccttgttgaaccaccatggtagctgaa 12831742  T
Q  311 ------------------taaattttgaggggcaactgcagatatgcccagccatccatacattaaatgccagacagaaccaaagaaactagagtgtaat 392  Q
                      |||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| || ||||||||    
T  12831743 ctgaataaaatgatcccgtaaattttgaggggtaactgcagatatgcctagccatccataaattaaatgccagacagaaccaaagaaattacagtgtaat 12831842  T
Q  393 aataagtgat 402  Q
    ||||||||||    
T  12831843 aataagtgat 12831852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 55 - 194
Target Start/End: Original strand, 27482644 - 27482783
Alignment:
Q  55 aaaaactattaacatatacccagcatggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaag 154  Q
    ||||||| ||| | ||| |||| |||||||||||||||||||||||| |||||| | ||||||||||| |||    ||||||| |||||||||  ||| |    
T  27482644 aaaaactcttagcctatgcccaacatggtgaacggactaagccaccagccatgataattgaagggaagtgtaacgtatttcaccttcaaccaccaaaagg 27482743  T
Q  155 agagggagttaatcttatcaaccacctttaataccgagca 194  Q
     |||||| |||||||||||||||||||  | |||||||||    
T  27482744 cgagggacttaatcttatcaaccacctgaattaccgagca 27482783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 39840023 - 39839963
Alignment:
Q  62 attaacatatacccagcatggtgaacggactaagccaccaaccatgaaagttgaagggaag 122  Q
    |||||| ||||| || ||||||||| ||||||||||||||||||||| |||| ||||||||    
T  39840023 attaacctatacacaacatggtgaagggactaagccaccaaccatgatagttaaagggaag 39839963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 58 - 181
Target Start/End: Original strand, 19314979 - 19315102
Alignment:
Q  58 aactattaacatatacccagcatggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaagaga 157  Q
    |||||||| | ||| || |||||||| ||||| |||||||||||||||||| | ||  ||||||    |  ||||||| | |||||||||||||| | ||    
T  19314979 aactattagcctatgcctagcatggtaaacgggctaagccaccaaccatgataattccagggaaataaagcaaatttcgccttcaaccacataaatgtga 19315078  T
Q  158 gggagttaatcttatcaaccacct 181  Q
    | || |||||||||||||||||||    
T  19315079 gtgacttaatcttatcaaccacct 19315102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 26778713 - 26778786
Alignment:
Q  76 agcatggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacat 149  Q
    |||||||| |||||||||| ||||||||||||| | ||||||| ||| | |  ||||||||| |||||||||||    
T  26778713 agcatggtaaacggactaaaccaccaaccatgataattgaaggaaagagaaaaaaatttcaccttcaaccacat 26778786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 167
Target Start/End: Original strand, 4396672 - 4396757
Alignment:
Q  82 gtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaat 167  Q
    ||||||||||||||| ||||  |||| ||||| |||||||| ||| |||||||| |  ||||||| ||||| | |||||| |||||    
T  4396672 gtgaacggactaagctaccagtcatgtaagttaaagggaagagtagtaaatttctccctcaaccatataaatgtgagggacttaat 4396757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 32252231 - 32252178
Alignment:
Q  69 tatacccagcatggtgaacggactaagccaccaaccatgaaagttgaagggaag 122  Q
    |||||| || ||||| |||||||||||||||||||||||| | ||||| |||||    
T  32252231 tataccgagaatggtaaacggactaagccaccaaccatgataattgaaaggaag 32252178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 311
Target Start/End: Original strand, 33692831 - 33693130
Alignment:
Q  13 aatatttacaatagaaatagaacaacaattaaaataggtagaaaaaactattaacatatacccagcatggtgaacggactaagccaccaaccatgaaagt 112  Q
    ||||||||||||||||| ||| ||| || ||||||||| |||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||    
T  33692831 aatatttacaatagaaacagagcaaaaactaaaataggcagaaaaaactattaacctatgcccagcatggtgaacgggctaagccaccaaccatgaaagt 33692930  T
Q  113 tgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaatcttatcaaccacctttaataccgagcaagttttatccgtaaattg 212  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33692931 tgaagggaagcgtgttaaatttcaccttcaaccacataaaagagatggacttaatcttatcaaccacctataataccgagcaagttttatccgtaaattg 33693030  T
Q  213 catgttaatt-tttctttccagatctcccagactgtagcaaaccagatgacttgtgaaattgattgacggacccttagtgaaccaccatagtagctgaat 311  Q
      ||||  || ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||  ||||||||||| ||||||||||    
T  33693031 tctgttgtttctttctttccagatctcccagactatagcaaaccagatgacctgtgaaattgattgacggacccttgctgaaccaccatggtagctgaat 33693130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 181
Target Start/End: Complemental strand, 25845750 - 25845648
Alignment:
Q  79 atggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaatcttatcaacca 178  Q
    |||||| | ||||||||||||||||||||  |||| ||||| || | |  ||| ||| | ||||||||||| |||||||| || ||||| ||||||||||    
T  25845750 atggtgtatggactaagccaccaaccatggtagttcaagggcagagaaggaaacttcgccttcaaccacatgaaagagagcgacttaattttatcaacca 25845651  T
Q  179 cct 181  Q
    |||    
T  25845650 cct 25845648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 69 - 194
Target Start/End: Complemental strand, 14788979 - 14788854
Alignment:
Q  69 tatacccagcatggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaatc 168  Q
    ||||||||| ||||  ||| |||||||||||||  ||||  | ||| ||||||| | |  ||||||| | ||||||||| ||||||  ||||| ||||||    
T  14788979 tatacccagaatggcaaactgactaagccaccactcatggtaattggagggaagagaaacaaatttcgccttcaaccacgtaaaagcaagggacttaatc 14788880  T
Q  169 ttatcaaccacctttaataccgagca 194  Q
    ||||| ||||||| ||| ||||||||    
T  14788879 ttatctaccacctataaaaccgagca 14788854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 36803257 - 36803185
Alignment:
Q  82 gtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaag 154  Q
    ||||||||||||||||||||| ||||||| ||||| ||||  ||  |||| ||| | ||||||||||||||||    
T  36803257 gtgaacggactaagccaccaagcatgaaaattgaaaggaatagtggtaaacttcgccttcaaccacataaaag 36803185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 25408893 - 25408827
Alignment:
Q  52 agaaaaaactattaacatatacccagcatggtgaacggactaagccaccaaccatgaaagttgaagg 118  Q
    ||||| ||| |||| | |||||||| |||||| || ||||||||||||||||||||| | |||||||    
T  25408893 agaaataacaattagcctatacccaacatggtaaatggactaagccaccaaccatgataattgaagg 25408827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 26285282 - 26285216
Alignment:
Q  81 ggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccac 147  Q
    |||||||||| ||||||| ||||| ||| | |||||| |||| |||  |||||||||||||||||||    
T  26285282 ggtgaacggattaagccatcaaccttgataattgaagtgaagggtagcaaatttcacattcaaccac 26285216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 13 - 400
Target Start/End: Complemental strand, 41529558 - 41529148
Alignment:
Q  13 aatatttacaatagaaatagaacaacaattaaaataggtagaaaaaactattaacatatacccagcatggtgaacggactaagccaccaaccatgaaagt 112  Q
    ||||||||||||||||| ||| ||| || ||||||| | |||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||| |    
T  41529558 aatatttacaatagaaacagagcaaaaactaaaataagcagaaaaaactattaacctatgcccagcatggtgaacggactaagtcaccaaccatgaaaat 41529459  T
Q  113 tgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaatcttatcaaccacctttaataccgagcaagttttatccgtaaattg 212  Q
    ||||||||||||| ||||||||||  ||||||||||||||||||| ||| ||||||||||||||||||| ||| ||||||||| ||||||||||||||||    
T  41529458 tgaagggaagcgtgttaaatttcatcttcaaccacataaaagagatggacttaatcttatcaaccacctgtaaaaccgagcaatttttatccgtaaattg 41529359  T
Q  213 catgttaatt-tttctttccagatctcccagact----gtagcaaaccagatgacttgtgaaattgattgacggacccttagtgaaccaccatagtagct 307  Q
    | ||||  || ||||||||||||||||| |||||    ||||||||||||||||| ||||||||||||||||||||||||  ||||||||||| ||| ||    
T  41529358 cctgttgtttctttctttccagatctcctagactgtacgtagcaaaccagatgacctgtgaaattgattgacggacccttgctgaaccaccatggtaact 41529259  T
Q  308 gaa------------------taaattttgaggggcaactgcagatatgcccagccatccatacattaaatgccagacagaaccaaagaaactagagtgt 389  Q
    |||                  |||||||||||||||||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||||| || |||||    
T  41529258 gaactgaataaaatgatcccgtaaattttgaggggcaactgtagatatgcccagccatccataaattaaataccatacagaaccaaagaaattacagtgt 41529159  T
Q  390 aataataagtg 400  Q
    || ||||||||    
T  41529158 aaaaataagtg 41529148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 52 - 195
Target Start/End: Original strand, 17116373 - 17116516
Alignment:
Q  52 agaaaaaactattaacatatacccagcatggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataa 151  Q
    ||||| |||||||| | ||||||||  ||||| ||| |||||||||||||||||||| |  |||||||||| | |  | ||||| | |||||||||||||    
T  17116373 agaaataactattagcttatacccaatatggtaaacagactaagccaccaaccatgataactgaagggaagagaagcatatttcgccttcaaccacataa 17116472  T
Q  152 aagagagggagttaatcttatcaaccacctttaataccgagcaa 195  Q
    | | ||| || ||||||||||||||||| | || ||||||||||    
T  17116473 atgcgagtgacttaatcttatcaaccacttgtattaccgagcaa 17116516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 203
Target Start/End: Original strand, 4997969 - 4998064
Alignment:
Q  108 aaagttgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaatcttatcaaccacctttaataccgagcaagttttatc 203  Q
    |||||||||| |||  ||| |||||||| | |||||||||||||||| |||||| ||||||||||| |||||||  | || || ||||||||||||    
T  4997969 aaagttgaagagaatagtagtaaatttcgccttcaaccacataaaagtgagggacttaatcttatccaccacctgaattatcgggcaagttttatc 4998064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 38154034 - 38153905
Alignment:
Q  52 agaaaaaactattaacatatacccagcatggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataa 151  Q
    ||||| |||||| ||| ||| || | || ||||||| ||||||||||||| | |||  |||| |||||||| |||  ||||||||| ||||||||| |||    
T  38154034 agaaataactatcaacctatgcctaacaaggtgaacagactaagccaccatctatggtagttaaagggaagagtaggaaatttcaccttcaaccacctaa 38153935  T
Q  152 aagagagggagttaatcttatcaaccacct 181  Q
    ||| ||| || |||||| |||| |||||||    
T  38153934 aagcgagagacttaatcctatcgaccacct 38153905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 34237262 - 34237154
Alignment:
Q  73 cccagcatggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaatcttat 172  Q
    |||| ||||||||| ||||||||||||||||||||| | ||||||||||   ||| ||||||| | |||||||||  ||||  ||| || ||||| || |    
T  34237262 cccaacatggtgaaaggactaagccaccaaccatgataattgaagggaataatatgaaatttcgccttcaaccaccaaaaaacgagagacttaattttgt 34237163  T
Q  173 caaccacct 181  Q
    |||||||||    
T  34237162 caaccacct 34237154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 16560200 - 16560155
Alignment:
Q  73 cccagcatggtgaacggactaagccaccaaccatgaaagttgaagg 118  Q
    |||||||||||||||||| ||||||||||| ||||| |||||||||    
T  16560200 cccagcatggtgaacggattaagccaccaaacatgatagttgaagg 16560155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 16605462 - 16605507
Alignment:
Q  73 cccagcatggtgaacggactaagccaccaaccatgaaagttgaagg 118  Q
    |||||||||||||||||| ||||||||||| ||||| |||||||||    
T  16605462 cccagcatggtgaacggattaagccaccaaacatgatagttgaagg 16605507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 40616734 - 40616799
Alignment:
Q  82 gtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccac 147  Q
    |||||||||||||||||||||||| || |||| |||||||| |||  | | ||||| |||||||||    
T  40616734 gtgaacggactaagccaccaaccaagatagttaaagggaagagtagcatacttcaccttcaaccac 40616799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 4997256 - 4997288
Alignment:
Q  82 gtgaacggactaagccaccaaccatgaaagttg 114  Q
    ||||||||||||||||||||||||| |||||||    
T  4997256 gtgaacggactaagccaccaaccataaaagttg 4997288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 7e-35; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 53 - 275
Target Start/End: Original strand, 34703453 - 34703676
Alignment:
Q  53 gaaaaaactattaacatatacccagcatggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaa 152  Q
    |||| |||||||| | |||  ||| ||||||||||| ||| |||||||||||||||||||| |||||||| ||   | ||||| | ||||||||||||||    
T  34703453 gaaataactattagcctatgtccaacatggtgaacgaacttagccaccaaccatgaaagttaaagggaagagttgcatatttcgccttcaaccacataaa 34703552  T
Q  153 agagagggagttaatcttatcaaccacctttaataccgagcaagttttatccgtaaattgcatgttaatt-tttctttccagatctcccagactgtagca 251  Q
    || |||||| |||||||||||||||||||  |  |||||||| ||| |||| || |||  ||||||| || |||||||||| || |||||||| ||||||    
T  34703553 agtgagggacttaatcttatcaaccacctgaagaaccgagcatgttctatctgtgaataacatgttatttctttctttccatatttcccagacagtagca 34703652  T
Q  252 aaccagatgacttgtgaaattgat 275  Q
     ||||||| |||||| ||||||||    
T  34703653 taccagataacttgtaaaattgat 34703676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 54 - 181
Target Start/End: Original strand, 6723683 - 6723810
Alignment:
Q  54 aaaaaactattaacatatacccagcatggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaa 153  Q
    ||||| |||||| | ||| || |||||||||||||||||||||||||| |||||||| ||||| ||| | |||||||| ||||| |||||||||||||||    
T  6723683 aaaaagctattagcctattccaagcatggtgaacggactaagccaccatccatgaaaattgaaaggaggagtattaaacttcaccttcaaccacataaaa 6723782  T
Q  154 gagagggagttaatcttatcaaccacct 181  Q
    | |||||| |||||||| || |||||||    
T  6723783 gtgagggacttaatcttgtcgaccacct 6723810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 36098611 - 36098719
Alignment:
Q  73 cccagcatggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaatcttat 172  Q
    |||| |||||||||||||||||||||||| |||||| | ||||||||||| ||| | |||||  | |||| |||| |||| | ||| || ||||| |||     
T  36098611 cccaacatggtgaacggactaagccaccagccatgataattgaagggaagtgtaatgaattttgccttcagccacctaaaggcgagagacttaatattac 36098710  T
Q  173 caaccacct 181  Q
    |||||||||    
T  36098711 caaccacct 36098719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 52 - 179
Target Start/End: Complemental strand, 44675224 - 44675097
Alignment:
Q  52 agaaaaaactattaacatatacccagcatggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataa 151  Q
    ||||| ||||||||   ||| |||| |||| | |||||||||||||||||||||||| | ||||||||||| | |  ||||||| | ||||||||||| |    
T  44675224 agaaataactattagtctatgcccaacatgataaacggactaagccaccaaccatgataattgaagggaagggaagcaaatttcgccttcaaccacatga 44675125  T
Q  152 aagagagggagttaatcttatcaaccac 179  Q
    | |  || |  |||||||||||||||||    
T  44675124 atgcaagtggcttaatcttatcaaccac 44675097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 12688274 - 12688178
Alignment:
Q  85 aacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaatcttatcaaccacct 181  Q
    ||||||||||||||||| |||||| |||| |||||||| ||   ||| ||||| ||||||||| ||||||  ||  | ||||||||||| |||||||    
T  12688274 aacggactaagccaccatccatgatagttaaagggaagagttggaaacttcaccttcaaccacttaaaagttagcaacttaatcttatccaccacct 12688178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 122
Target Start/End: Complemental strand, 52251438 - 52251400
Alignment:
Q  84 gaacggactaagccaccaaccatgaaagttgaagggaag 122  Q
    ||||||||||||||||||||||||| |||||| ||||||    
T  52251438 gaacggactaagccaccaaccatgatagttgaggggaag 52251400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 181
Target Start/End: Original strand, 10686159 - 10686284
Alignment:
Q  56 aaaactattaacatatacccagcatggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaaga 155  Q
    |||||||||| | ||| |||| ||| |||||||||| || ||||||||||||||  || | ||||||  || |||| ||| | |||||||||  ||| |     
T  10686159 aaaactattagcctatgcccaacattgtgaacggacaaaaccaccaaccatgaagattaatgggaagattagtaaacttcgccttcaaccacgcaaatgt 10686258  T
Q  156 gagggagttaatcttatcaaccacct 181  Q
     ||||| ||||||||||| |||||||    
T  10686259 aagggacttaatcttatccaccacct 10686284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 58 - 273
Target Start/End: Original strand, 37738061 - 37738278
Alignment:
Q  58 aactattaacatatacccagcatggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattca-accacataaaagag 156  Q
    |||||||| | ||| ||||  ||||||||||||||||||||||| ||||||||||| |||||||| ||| | |||||| | ||||  |||||| |||| |    
T  37738061 aactattagcctatgcccaaaatggtgaacggactaagccaccagccatgaaagttaaagggaagagtagtgaatttcgccttcaggccacatgaaagtg 37738160  T
Q  157 agggagttaatcttatcaaccacctttaataccgagcaagttttatccgtaaattgcatgttaatt-tttctttccagatctcccagactgtagcaaacc 255  Q
    || || |||||||||||| ||||||  | |  |||||| ||||||||| ||||| |  ||||| || ||||||||||||| |||||||| || |||||||    
T  37738161 agcgacttaatcttatcagccacctgaagtgtcgagcatgttttatccataaatagtctgttatttctttctttccagatttcccagacagttgcaaacc 37738260  T
Q  256 agatgacttgtgaaattg 273  Q
    | ||  | ||||||||||    
T  37738261 aaatatcctgtgaaattg 37738278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 52 - 179
Target Start/End: Complemental strand, 9840895 - 9840768
Alignment:
Q  52 agaaaaaactattaacatatacccagcatggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataa 151  Q
    ||||| |||||||| ||||| |||| ||||||||||||| ||||||||||||||||| | ||||| ||||| |||  ||||||  | ||||| |||||||    
T  9840895 agaaataactattagcatatgcccatcatggtgaacggattaagccaccaaccatgataattgaatggaagagtagcaaattttgccttcaatcacataa 9840796  T
Q  152 aagagagggagttaatcttatcaaccac 179  Q
    ||| ||| || |||||||||||||||||    
T  9840795 aagcgagcgatttaatcttatcaaccac 9840768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 44735982 - 44736087
Alignment:
Q  89 gactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaatcttatcaaccacctttaatac 188  Q
    ||||||||||| |||||||||| ||||||||||| |||||||| ||| | |||||||||||||||| |||||| |||||||| || |||||||  | |||    
T  44735982 gactaagccactaaccatgaaaattgaagggaagagtattaaacttcgccttcaaccacataaaagtgagggacttaatcttgtcgaccacctgaactac 44736081  T
Q  189 cgagca 194  Q
    ||||||    
T  44736082 cgagca 44736087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 82 - 181
Target Start/End: Complemental strand, 39117517 - 39117418
Alignment:
Q  82 gtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaatcttatcaaccacct 181  Q
    |||||||||||||||||||| ||||| |||||||||| ||| ||| |||||||| |  ||||||||||||| | |||||| ||||||||||| |||||||    
T  39117517 gtgaacggactaagccaccagccatgtaagttgaaggaaagagtagtaaatttctccctcaaccacataaatgtgagggacttaatcttatccaccacct 39117418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 193
Target Start/End: Complemental strand, 27009327 - 27009186
Alignment:
Q  52 agaaaaaactattaacatatacccagcatggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataa 151  Q
    ||||| |||||||| | |||  |||| ||||| |||||||||||||||||||||||  | ||||||||||| | | |||||||| | ||||| ||| |||    
T  27009327 agaaataactattagcctatgtccagtatggtaaacggactaagccaccaaccatggtaattgaagggaagagaagtaaatttcgccttcaatcacctaa 27009228  T
Q  152 aagagagggagttaatcttatcaaccacctttaataccgagc 193  Q
    ||| ||| || ||||||||||||||||| | || ||||||||    
T  27009227 aagcgagagacttaatcttatcaaccacgtgtattaccgagc 27009186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 274
Target Start/End: Original strand, 27708162 - 27708379
Alignment:
Q  58 aactattaacatatacccagcatggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaagaga 157  Q
    |||||||| | ||| ||||| | ||||||| || ||||||||||||||||||  ||||||||||| |||  ||||||| | || |||||| |||||| ||    
T  27708162 aactattagcctatgcccagtacggtgaacagattaagccaccaaccatgaagattgaagggaagagtagcaaatttcgcctttaaccacgtaaaagcga 27708261  T
Q  158 gggagttaatcttatcaaccacctttaataccgagcaagttttatccgtaaattgcatgttaatt-tttctttccagatctcccagactgtagcaaacca 256  Q
    | || |||||||||||||||||||  | |||| |||| ||||| || ||||||    ||||| || ||||||||||||| || ||||  |||| ||||||    
T  27708262 gcgacttaatcttatcaaccacctgaattaccaagcatgttttgtctgtaaataatctgttatttctttctttccagatttctcagatggtagaaaacca 27708361  T
Q  257 gatgacttgtgaaattga 274  Q
     || || ||| |||||||    
T  27708362 tataacctgtaaaattga 27708379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 53 - 172
Target Start/End: Complemental strand, 18766798 - 18766679
Alignment:
Q  53 gaaaaaactattaacatatacccagcatggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaa 152  Q
    |||| ||| |||| ||||| ||||| || ||||||||| |||||||||| |||||||| || ||||||||  || |||||||| |  |||||||||||||    
T  18766798 gaaataacaattagcatatgcccagtattgtgaacggattaagccaccagccatgaaaattaaagggaagattagtaaatttcgccatcaaccacataaa 18766699  T
Q  153 agagagggagttaatcttat 172  Q
     | |||||| ||||||||||    
T  18766698 tgtgagggacttaatcttat 18766679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 36176612 - 36176740
Alignment:
Q  52 agaaaaaactattaacatatacccagcatggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataa 151  Q
    ||||| |||||||| | |||||||| |||||| || |||||||  |||||||||||| | |||||| |||| | |  |||||||||  | ||||||||||    
T  36176612 agaaataactattagcctatacccaacatggtaaatggactaaaacaccaaccatgataattgaagagaagagaagcaaatttcaccat-aaccacataa 36176710  T
Q  152 aagagagggagttaatcttatcaaccacct 181  Q
    | | ||| || |||||||||||||||||||    
T  36176711 atgtgagcgacttaatcttatcaaccacct 36176740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 179
Target Start/End: Complemental strand, 30505843 - 30505717
Alignment:
Q  53 gaaaaaactattaacatatacccagcatggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaa 152  Q
    |||| |||||||| | ||| |||| |||||| ||| |||||| ||||||||||||| | ||||||||||| | |  ||||||| | |||||| | |||||    
T  30505843 gaaataactattagcctatgcccaacatggtaaacagactaaaccaccaaccatgataattgaagggaagtgaagaaaatttctccttcaactagataaa 30505744  T
Q  153 agagagggagttaatcttatcaaccac 179  Q
     | |||  | |||||||||||||||||    
T  30505743 tgcgagaaacttaatcttatcaaccac 30505717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 24739916 - 24739851
Alignment:
Q  82 gtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccac 147  Q
    ||||||||||||||||||||||||||| |||| |||||||| |||  | | ||||| |||||||||    
T  24739916 gtgaacggactaagccaccaaccatgatagttaaagggaagggtagcatacttcaccttcaaccac 24739851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 33645833 - 33645932
Alignment:
Q  79 atggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaatcttatcaacca 178  Q
    ||||||||| |||||| ||||||||||||  | ||||| ||||| |||  ||||||  | ||||||||| |||| | ||| || ||||||||||||||||    
T  33645833 atggtgaacagactaacccaccaaccatggtaattgaaaggaagagtagcaaatttttccttcaaccacctaaatgcgagcgacttaatcttatcaacca 33645932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 841548 - 841613
Alignment:
Q  82 gtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccac 147  Q
    |||||| |||||||||||||||||||| |||| |||||||| |||  | | ||||| |||||||||    
T  841548 gtgaacagactaagccaccaaccatgatagttaaagggaagagtagcatacttcaccttcaaccac 841613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 45131117 - 45131166
Alignment:
Q  73 cccagcatggtgaacggactaagccaccaaccatgaaagttgaagggaag 122  Q
    ||||||||||| || |||||||||||||| |||||| | |||||||||||    
T  45131117 cccagcatggtaaatggactaagccaccacccatgataattgaagggaag 45131166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 38409099 - 38409019
Alignment:
Q  69 tatacccagcatggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacat 149  Q
    |||||| || ||||| |||||||| | ||||||||||||| | ||||||||||| |||   |||||||| |||||| ||||    
T  38409099 tatacctagaatggtaaacggactgaaccaccaaccatgataattgaagggaagtgtagcgaatttcaccttcaactacat 38409019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 40426926 - 40426966
Alignment:
Q  82 gtgaacggactaagccaccaaccatgaaagttgaagggaag 122  Q
    ||||||||| ||||||||||||||||| |||| ||||||||    
T  40426926 gtgaacggattaagccaccaaccatgatagttaaagggaag 40426966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 2682891 - 2682773
Alignment:
Q  52 agaaaaaactattaacatatacccagcatggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataa 151  Q
    ||||| |||| ||||| ||| | |||||||||||| ||||||||||||||||||||| | |||||| |||  |||  ||||||||| ||||||||| |||    
T  2682891 agaaataacttttaacctatgctcagcatggtgaaaggactaagccaccaaccatgacaattgaagagaatagtaggaaatttcaccttcaaccacctaa 2682792  T
Q  152 aagagagggagttaatctt 170  Q
    |||  ||||| ||||||||    
T  2682791 aagcaagggacttaatctt 2682773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 84 - 178
Target Start/End: Complemental strand, 12688284 - 12688190
Alignment:
Q  84 gaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaatcttatcaacca 178  Q
    |||||||||||||||||| ||||| || || |||||||| ||| |||||||| | |||||||||| ||| | |||||| ||||||||||| ||||    
T  12688284 gaacggactaagccaccagccatgtaaattaaagggaagagtagtaaatttctccttcaaccacacaaatgtgagggacttaatcttatccacca 12688190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 74 - 194
Target Start/End: Complemental strand, 34715022 - 34714902
Alignment:
Q  74 ccagcatggtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaatcttatc 173  Q
    |||| ||||| ||| |||||||||||||||||||  | |||| |||||| | | |||||||  | ||||||||| |||||| ||| || |||||||||||    
T  34715022 ccagtatggtaaacagactaagccaccaaccatggtaattgatgggaagagaagtaaattttgctttcaaccacctaaaagtgagagacttaatcttatc 34714923  T
Q  174 aaccacctttaataccgagca 194  Q
    |||||| | || |||||||||    
T  34714922 aaccacgtgtattaccgagca 34714902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 83 - 209
Target Start/End: Complemental strand, 27105369 - 27105243
Alignment:
Q  83 tgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaatcttatcaaccacctt 182  Q
    |||||||| |||||||||| ||||| || || |||||||  ||| |||| ||| | |||||||||| ||| | |||||| ||||||||||| |||||||     
T  27105369 tgaacggattaagccaccagccatgtaaattaaagggaatagtagtaaacttctccttcaaccacacaaatgtgagggacttaatcttatccaccacctg 27105270  T
Q  183 taataccgagcaagttttatccgtaaa 209  Q
    | | |||||||||| |||  |||||||    
T  27105269 tgacaccgagcaagatttgaccgtaaa 27105243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 83 - 209
Target Start/End: Complemental strand, 27147178 - 27147052
Alignment:
Q  83 tgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaagagagggagttaatcttatcaaccacctt 182  Q
    |||||||| |||||||||| ||||| || || |||||||  ||| |||| ||| | |||||||||| ||| | |||||| ||||||||||| |||||||     
T  27147178 tgaacggattaagccaccagccatgtaaattaaagggaatagtagtaaacttctccttcaaccacacaaatgtgagggacttaatcttatccaccacctg 27147079  T
Q  183 taataccgagcaagttttatccgtaaa 209  Q
    | | |||||||||| |||  |||||||    
T  27147078 tgacaccgagcaagatttgaccgtaaa 27147052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 32533064 - 32533129
Alignment:
Q  82 gtgaacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccac 147  Q
    ||||||||||||||||||||||||||| |||| |||||||| |||  ||| ||||  |||||||||    
T  32533064 gtgaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccac 32533129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 11324563 - 11324494
Alignment:
Q  85 aacggactaagccaccaaccatgaaagttgaagggaagcgtattaaatttcacattcaaccacataaaag 154  Q
    ||||||||||||||||| |||||| | ||||||||||| | |  ||||||| | ||||||||| ||||||    
T  11324563 aacggactaagccaccacccatgataattgaagggaagagaagcaaatttcgccttcaaccacgtaaaag 11324494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 17292757 - 17292806
Alignment:
Q  73 cccagcatggtgaacggactaagccaccaaccatgaaagttgaagggaag 122  Q
    ||||||||| | |||||||||||||| ||||||||| | |||||||||||    
T  17292757 cccagcatgataaacggactaagccatcaaccatgataattgaagggaag 17292806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 18672134 - 18672093
Alignment:
Q  81 ggtgaacggactaagccaccaaccatgaaagttgaagggaag 122  Q
    |||||||||||| ||||||||||||||| |||| ||||||||    
T  18672134 ggtgaacggactcagccaccaaccatgatagttaaagggaag 18672093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University