View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8070_high_3 (Length: 273)
Name: NF8070_high_3
Description: NF8070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8070_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 4 - 258
Target Start/End: Original strand, 49927819 - 49928073
Alignment:
| Q |
4 |
atgcaatagtattatgagagagagagttttatcgtttattacggctcgatgaaatagtttatctagctagttgtaaacaaaatatctaatttacacnnnn |
103 |
Q |
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| T |
49927819 |
atgcaacagtattatgagagagag--ttttatcgtttattacggctcgatgaaataatttatctagctagttgtaaacaaaatatctaatttacacaaaa |
49927916 |
T |
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| Q |
104 |
nnnntattaatattaa---aaggccaaatgcaccctatctctaaattgctatccttaacaaataatgccatttggagagattaacgttaacctctccaaa |
200 |
Q |
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| T |
49927917 |
aaaaaaaaaaaattaataaaaggccaaatgcaccctatctctaaattgctatccttaacaaataatgccatttggagagattaacgttaacctctccaaa |
49928016 |
T |
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| Q |
201 |
tatctctctaatnnnnnnnncttttctgttcctaccaacaactgatcaagtatcaaaa |
258 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49928017 |
tatctctctaat-aaaaaaacttttctgttcctaccaacaactgatcaagtatcaaaa |
49928073 |
T |
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