View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8070_high_5 (Length: 228)
Name: NF8070_high_5
Description: NF8070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8070_high_5 |
 | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 16919481 - 16919678
Alignment:
| Q |
20 |
cactcttccaatgaatcctcctattttggaatctgcattgattcctagcataccaaatagcagaaatgatgttaacgatagcagcaataattgttaatct |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| | ||||||||||||||||||||| |
|
|
| T |
16919481 |
cactcttccaatgaatcctcctattttggaatctgcattgattcctagcgtaccaaatagcagaaataatgttaacaacagcagcaataattgttaatct |
16919580 |
T |
|
| Q |
120 |
acattgaggagaccaacctcttccactaaggccccaaatttcttccaacgctgaaaaatgaagagattggttgagaattgaagcaagccaacaccaaa |
217 |
Q |
| |
|
||| || ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
16919581 |
acactgtggagaccaacctctttcactaaggccccaaatttcttccaaagctgaaaaatgaagagattggttgagatttgaagccagccaacaccaaa |
16919678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 14627944 - 14628039
Alignment:
| Q |
122 |
attgaggagaccaacctcttccactaaggccccaaatttcttccaacgctgaaaaatgaagagattggttgagaattgaagcaagccaacaccaaa |
217 |
Q |
| |
|
||||||| ||||||||||| |||| | | ||||||||| || || ||| | |||||||| |||||||||||||| ||||| | ||||||||||| |
|
|
| T |
14627944 |
attgaggtgaccaacctctcgcactcaaactccaaatttcctctaaagctaagaaatgaagggattggttgagaatagaagccaaccaacaccaaa |
14628039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 217
Target Start/End: Complemental strand, 189439 - 189344
Alignment:
| Q |
122 |
attgaggagaccaacctcttccactaaggccccaaatttcttccaacgctgaaaaatgaagagattggttgagaattgaagcaagccaacaccaaa |
217 |
Q |
| |
|
||||||| ||||||||||| |||| | | ||||||||| || || ||| | |||||||| |||||||||||||| ||||| | ||||||||||| |
|
|
| T |
189439 |
attgaggtgaccaacctctcgcactcaaactccaaatttcctctaaagctaagaaatgaagggattggttgagaatagaagccaaccaacaccaaa |
189344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University