View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8070_low_2 (Length: 505)
Name: NF8070_low_2
Description: NF8070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8070_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 64 - 294
Target Start/End: Original strand, 28322518 - 28322749
Alignment:
| Q |
64 |
agagagaactcaaacacgtatatatagtcttggtctccctttttctttagaagacttctcaaatacatatattttcacctaacacta-catcatccaaaa |
162 |
Q |
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| T |
28322518 |
agagagaactcaaacacgtgcatatagtcttggtctccctttttctttacaagacttctcaaatacatatattttcacctaacactaacatcatcaaaaa |
28322617 |
T |
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| Q |
163 |
aataaagtatcttaagattttgaattgcgatcctcttaatacatcaggttggaatccttttggtgtcaatttttgtgtactaatctatctaaacttttga |
262 |
Q |
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| T |
28322618 |
aataaagtatcttaagattttgaattgcgatcctctcaatatatcatgttggaatccttatggtgtcaatttttgtgtactaatctatctaaacttttga |
28322717 |
T |
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| Q |
263 |
tatgatttcaaatgagtgatccgctagtaaat |
294 |
Q |
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| T |
28322718 |
tgtgatttcaaatgagtgatccgctagtaaat |
28322749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 295 - 499
Target Start/End: Original strand, 28322802 - 28323006
Alignment:
| Q |
295 |
aacactgtcataaatcattgtaaattgtactctacttcttttcacgagtcttttgttaatacgtacttaaatcttcacacggtttaggtaggcgctgttc |
394 |
Q |
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| T |
28322802 |
aacattgtcataaatcattgtaaattgtactcta-ttcttttcacgagtcttttgttaatacgcacttaaatcttcacacggttcaggtaggcgctgttc |
28322900 |
T |
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| Q |
395 |
tattttctatgccggtttt-tggtggacgtggagacacaggaatttaatgtgtctaaatcatgaaacctggtccattcatcggattagttatcatgttca |
493 |
Q |
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| T |
28322901 |
tattttctatgtcggttttctggtggacgtggagacacaagaatttaacgtgtctaaatcatgaaacctggtccattcatcggcttagttatcatgttca |
28323000 |
T |
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| Q |
494 |
tctcac |
499 |
Q |
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| |||| |
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| T |
28323001 |
tgtcac |
28323006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 414 - 467
Target Start/End: Original strand, 24530553 - 24530606
Alignment:
| Q |
414 |
tggtggacgtggagacacaggaatttaatgtgtctaaatcatgaaacctggtcc |
467 |
Q |
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| T |
24530553 |
tggtggacgtggagacaccggaacttgatgtgtctaaatcatgaaacctggtcc |
24530606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 466
Target Start/End: Original strand, 7818746 - 7818798
Alignment:
| Q |
414 |
tggtggacgtggagacacaggaatttaatgtgtctaaatcatgaaacctggtc |
466 |
Q |
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| T |
7818746 |
tggtggacatggagacaccgtaatttgatgtgcctaaatcatgaaacttggtc |
7818798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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