View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8070_low_4 (Length: 295)
Name: NF8070_low_4
Description: NF8070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8070_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 47230662 - 47230929
Alignment:
| Q |
14 |
ttctccgtggaattctcggtgtatgtaatttgtagattgtttgcttatcataaatataaatgcacttgtggatataattatgttttaatgtcttcatctt |
113 |
Q |
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| T |
47230662 |
ttctccgtggaattctcagtgtatgtaatttgtagattgtttaattatcataaatataaatgcacttgtggatataattatgttttaatgtcttcatctt |
47230761 |
T |
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| Q |
114 |
ttgagtatttagatggttattagaaatattttattttagattattaaggataccattgaattgatcaatgtagatcattcaaatccattaagttatatgc |
213 |
Q |
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| T |
47230762 |
ttgagtatttagatgattattagaaatattttattttagattattaaggataccattgagttgatcaatgtagatcattcaaatccattaagttatatgc |
47230861 |
T |
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| Q |
214 |
caagcgtgatccaagctgcaggagtggtggttcgagtctaagatcaaagagaaaacttcggtatatat |
281 |
Q |
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| T |
47230862 |
caagcgtgatccaagctgcaggagtggtggttcgagtctaagatcaaagagaaaacttcggtatatat |
47230929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 167 - 281
Target Start/End: Original strand, 5730546 - 5730660
Alignment:
| Q |
167 |
cattgaattgatcaatgtagatcattcaaatccattaagttatatgccaagcgtgatccaagctgcaggagtggtggttcgagtctaagatcaaagagaa |
266 |
Q |
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| T |
5730546 |
cattgaattgatcattgtagatcattcaaatccattaatttatatgccaagcatgatccaagctgcaggggtggtggttcgagtctaagatcaaagagaa |
5730645 |
T |
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| Q |
267 |
aacttcggtatatat |
281 |
Q |
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| T |
5730646 |
aacttcaatatatat |
5730660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 167 - 281
Target Start/End: Original strand, 5801064 - 5801178
Alignment:
| Q |
167 |
cattgaattgatcaatgtagatcattcaaatccattaagttatatgccaagcgtgatccaagctgcaggagtggtggttcgagtctaagatcaaagagaa |
266 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5801064 |
cattgaattgatcattgtagatcattcaaatccattaatttatatgccaagcatgatccaagctgcaggggtggtggttcgagtctaagatcaaagagaa |
5801163 |
T |
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| Q |
267 |
aacttcggtatatat |
281 |
Q |
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|||||| ||||||| |
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| T |
5801164 |
aacttcaatatatat |
5801178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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