View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8070_low_9 (Length: 217)
Name: NF8070_low_9
Description: NF8070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8070_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 49256931 - 49256748
Alignment:
| Q |
20 |
agagccagaaagacttggaagtgaaggcaaacctgtttttcccagtttgtaaaacttgttataagggatagcaaaactgcttgacaggaggcaccaacaa |
119 |
Q |
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| T |
49256931 |
agagccagaaagacttggaagtgaaggcaaacctgtttttcccagtttgtaaaacttgttataagggatagcaaaactgcttgacaggaggcaccaacaa |
49256832 |
T |
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| Q |
120 |
ttatcccaatccaaagaccttttcctctcaattcaaaccagaaacccaatataacagcaattggaattccaaaaacataatagg |
203 |
Q |
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| T |
49256831 |
ttatcccaatccaaagaccttttcctctcaattcaaaccagaaacccaatataacagcaattggaattccaaaaacataatagg |
49256748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 49269891 - 49269708
Alignment:
| Q |
20 |
agagccagaaagacttggaagtgaaggcaaacctgtttttcccagtttgtaaaacttgttataagggatagcaaaactgcttgacaggaggcaccaacaa |
119 |
Q |
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||||||| |||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| |||||||||||| |
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| T |
49269891 |
agagccacaaagacttgggagcgaaggcaaacctgtttttcccagtttgtaaaacctgttataagggctagcaaaagtgcttgacagaaggcaccaacaa |
49269792 |
T |
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| Q |
120 |
ttatcccaatccaaagaccttttcctctcaattcaaaccagaaacccaatataacagcaattggaattccaaaaacataatagg |
203 |
Q |
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|||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49269791 |
gtatcccaatccacagtccttttcctctcaactcaaaccagaaacccaatataacagcaattggaattccaaaaacatagtagg |
49269708 |
T |
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