View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8071_low_4 (Length: 292)
Name: NF8071_low_4
Description: NF8071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8071_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 34 - 273
Target Start/End: Complemental strand, 54573851 - 54573610
Alignment:
| Q |
34 |
agatactctagtattgggttttgtaaattagttatgaatttatgccacatatata--gtgtctgtaatttaatttcttgcataccttcatagattaaaga |
131 |
Q |
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| T |
54573851 |
agatactctagtattgggttttgtaaatttgttatgaatttatgccacatatatattgtgtctgtaatttaatttcttgcataccttcatagattaaaga |
54573752 |
T |
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| Q |
132 |
agaatttgctgaaggaaaagatcttatggttggtgtcgtatctgccatggtcctaaaaattgagatggttctctggccttgggagaagagcagatgtata |
231 |
Q |
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| T |
54573751 |
agaatttgctgaaggaaaagatcttatggttggtgtcgtatctgccatggtcctaaaaattgaaatggttctctggccttgggagaagagcagatgtata |
54573652 |
T |
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| Q |
232 |
ttatttttaatgtgctgtcagtagtaatttttcgaacgtgta |
273 |
Q |
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| T |
54573651 |
ttatttttaatgtgctgtcagtagtaatttttcgaacgtgta |
54573610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 54579667 - 54579550
Alignment:
| Q |
44 |
gtattgggttttgtaaatt-agttatgaatttatgccacatatatag--tgtc---tgtaatttaatttcttgcataccttcatagattaaagaagaatt |
137 |
Q |
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| T |
54579667 |
gtattgggttttgtaaatttagttatgaatttatgccacatatatagtttgtctcttttaatttgatttattggatacattcatagattaaagatggatt |
54579568 |
T |
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| Q |
138 |
tgctgaaggaaaagatct |
155 |
Q |
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| T |
54579567 |
tgctgatggaaaagatct |
54579550 |
T |
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