View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8072_high_1 (Length: 326)
Name: NF8072_high_1
Description: NF8072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8072_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 44 - 267
Target Start/End: Original strand, 38790857 - 38791080
Alignment:
| Q |
44 |
ttacgaaattaaatgagacaaactattgcatcttacatcatcttctggtagaagtttcaaagtcgaacgaaaaacattacaaacataaatataattaaaa |
143 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38790857 |
ttacgaaattaaatgagacaaactattacatcttacatcatcttctggtagaagtttcaaagtcgaacgaaaaacattgcaaacataaatataattaaaa |
38790956 |
T |
|
| Q |
144 |
tataacgaagaatgtatgagatttgtcaacagatcaacacattggttagcttcgcaatgcacttgacaaactgaagttctccatataggacggtggataa |
243 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38790957 |
tacaatgaagaatgtatgagatttgtcaacagatcaacacattgtttagcctcgcaatgcacttgacaaactgaagttctccatataggacggtggataa |
38791056 |
T |
|
| Q |
244 |
gagagatcacctcatggagaagag |
267 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
38791057 |
gagagatcacctcatggagaagag |
38791080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 290
Target Start/End: Original strand, 44107113 - 44107188
Alignment:
| Q |
215 |
tgaagttctccatataggacggtggataagagagatcacctcatggagaagaggttggaagaaagaattttgagat |
290 |
Q |
| |
|
|||||| |||||| ||||||||||| ||||||||||||||| | || ||||| ||| ||||||| |||| ||||| |
|
|
| T |
44107113 |
tgaagtgctccatccaggacggtggagaagagagatcacctcttagataagagattgaaagaaagcatttagagat |
44107188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 13808419 - 13808472
Alignment:
| Q |
219 |
gttctccatataggacggtggataagagagatcacctcatggagaagaggttgg |
272 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||| || | |||||||||| |
|
|
| T |
13808419 |
gttctccatataggacggtggagaagagagactacctcgtgaaaaagaggttgg |
13808472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University