View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8072_high_2 (Length: 322)
Name: NF8072_high_2
Description: NF8072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8072_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 14 - 306
Target Start/End: Original strand, 27976436 - 27976725
Alignment:
| Q |
14 |
cacacacgcatatatatttaaaacttttgtactccaactaattttatttttgtttgtgcagttaagagaaatgaagaatgctcttgtgacaatggacaaa |
113 |
Q |
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| T |
27976436 |
cacacacacatatatatttaaaacttttgtactccaactaattttatttttgtttgtgcagttaagagaaatgaagaatgctcttgtgacaagggacaaa |
27976535 |
T |
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| Q |
114 |
gagatacaatttttaaatcagaagataaacggtccagacacaaatccagacgaaagtccatacacaacaaccacataatacaaatatacaccacatgaag |
213 |
Q |
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| T |
27976536 |
gagatacaatttttaaatcagaagataaacggtccagacacaaatccagacgaaagtccatacacaacaaccacagaatacaaatatacaccacatgaag |
27976635 |
T |
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| Q |
214 |
gactttttagaaaatcaggtcaaggatccaacatgcaggaggatactgatacttcatctctaaacatcgacaacaattctatcagaacatctt |
306 |
Q |
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| T |
27976636 |
cactttttagaaaatcaggtcaaggatccaacatgc---aggatactgatacttcatctctaaacatcgacaacaattctatcagaacatctt |
27976725 |
T |
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