View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8072_high_4 (Length: 254)
Name: NF8072_high_4
Description: NF8072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8072_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 24086863 - 24087093
Alignment:
| Q |
16 |
ataatacctatctcattaaaatctcggtcaagaagtgcaagctggagtctaagtccctgcaatcttcctcctgttgcaaatgcaatagatggtggcacgt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24086863 |
ataatacctatctcattaaaatctcggtcaagaagtgcaagctggagtctaagtccctgcaatcttcctcctgttgcaaatgcaatagatggtggcacgc |
24086962 |
T |
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| Q |
116 |
gaactcgtaattcagcatggccaagtaacccagaggctgctgcagcatgagccctggcctgtgcttgaagatgcagataaattgcatacgccctcagact |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24086963 |
gaactcgtaattcagcatggccaagtaacccagaggctgctgcagcatgagccctggcctgtgattgaagatgcagataaattgcatacgccctcagact |
24087062 |
T |
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| Q |
216 |
tgtaatcatcacagagaccgacagtattatc |
246 |
Q |
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||||| ||||||| ||||||||||||||||| |
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| T |
24087063 |
tgtaaccatcacaaagaccgacagtattatc |
24087093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 24090925 - 24091155
Alignment:
| Q |
16 |
ataatacctatctcattaaaatctcggtcaagaagtgcaagctggagtctaagtccctgcaatcttcctcctgttgcaaatgcaatagatggtggcacgt |
115 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24090925 |
ataatacctatctcattaaaatttcggtcaagaagtgcaagctggagtctaagtccctgcaatcttcctcctgttgcaaatgcaatagatggtggcacgt |
24091024 |
T |
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| Q |
116 |
gaactcgtaattcagcatggccaagtaacccagaggctgctgcagcatgagccctggcctgtgcttgaagatgcagataaattgcatacgccctcagact |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24091025 |
gaactcgtaattcagcatggccaagtaacccagaggctgctgcagcatgagccctggcctgtgattgaagatgcagataaattgcatacgccctcagact |
24091124 |
T |
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| Q |
216 |
tgtaatcatcacagagaccgacagtattatc |
246 |
Q |
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||||| ||||||| ||||||||||||||||| |
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| T |
24091125 |
tgtaaccatcacaaagaccgacagtattatc |
24091155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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