View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8072_low_1 (Length: 608)
Name: NF8072_low_1
Description: NF8072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8072_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 10 - 591
Target Start/End: Complemental strand, 53740636 - 53740047
Alignment:
| Q |
10 |
gagaagaaaaggaaaagggtggtaaattgtgatgactggaatgggattttcctcccacagtggtctggtcacacgagaatgatgacctatnnnnnnn-ta |
108 |
Q |
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| T |
53740636 |
gagaagaaaaggaaaagggtggtaaattgtgatgactggaatgagattttcctcccag-------tgatcacacgagaatgacgacctatccccccccta |
53740544 |
T |
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| Q |
109 |
tgtgacaactatttgttaatttctttagttttataaccacttattctgttacttgcaacatatttcaataaatataagttgtgttttcgatgaaaaaatc |
208 |
Q |
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| T |
53740543 |
tgtgacaactatttgttaatttctttagttt-ataaccacttattctgttacttgcaacataattcaataaatataagttgtgttt-caatgaaaaaatt |
53740446 |
T |
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| Q |
209 |
tataatgcttgtatagcccacta-ccgccaatagcttcaatgagtgtagtggcgcaactcgatcatcatggtctgccgttaacaacatagttgatgggta |
307 |
Q |
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| T |
53740445 |
tata-tgcttgtatagcccactaaccgccaatagcttcaatgagtgtagtggcacaactcgatcatcatgatctgccgttaacaacatagttgatgggta |
53740347 |
T |
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| Q |
308 |
ttgaattgacttaacagg---------------tcgccggacattatgcaatggtgagtacctaaagcagtagataataaaagaatcatatttcaaaaca |
392 |
Q |
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| T |
53740346 |
ttgaattgacttgtcaggatgctgttcccaaggtcgccggacattatgcaatggtgagtacctaaagcagtagataataaaagaatcatatttcaaaaca |
53740247 |
T |
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| Q |
393 |
tacctaccaaaacatatccaaataataaaaatcataggagttcataaagcaatctgtctttcaaaacatggttgagaaacaacaggaaagtagatatatt |
492 |
Q |
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| T |
53740246 |
tacctaccaaaacatatccaaataataaaaaccacgggagttcataaagcaatctgtctttcaaaacatggttgagaaacaacaggaaagcagatatatt |
53740147 |
T |
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| Q |
493 |
atttacttttttccagatgaacctc-aaatatgaggataaaatggtaatgagaatcctcaacttatgccaggaaataattatgaataccatgcagtcaat |
591 |
Q |
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| T |
53740146 |
atttacttttttctagatgaacctcaaaatatgaggataaaatggtaattagaatcctcaacttatgccaggaaataattatgaataccatgcagtcaat |
53740047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 8559514 - 8559425
Alignment:
| Q |
231 |
accgccaatagcttcaatgagtgtagtggcgcaactcgatcatcatggtctgccgttaacaacatagttgatgggtattgaattgactta |
320 |
Q |
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| T |
8559514 |
accgccaatagcttcaatgaatgtaatggcacaacacgatcatcatgatcagctgtcaatagcattgttgatgggtactgaatcgactta |
8559425 |
T |
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