View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8073_low_2 (Length: 364)
Name: NF8073_low_2
Description: NF8073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8073_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 11890950 - 11890656
Alignment:
| Q |
16 |
atggttacaagtccaagaactaaaaccagaaacattctactacaaatactagctttctgtttcaatgtttttgtcatcttatcccaaactgttgcagatt |
115 |
Q |
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| T |
11890950 |
atggttacaagtccaagaactaaaaccagcaacattctactaccactactagctttctgtttcaatgtttttgtcatcttatcccaaactgttgcagatt |
11890851 |
T |
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| Q |
116 |
caccatcaaaagaaacacaagttggttatggctacacaatcataagtgtaaaaagtgatccaacaggaaaatctttgtctgctaaccttaaaactcatca |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11890850 |
caccatcaaaagaaacacaagttggttatggctacacaatcataagtgtaaaaagtgatccaacaggaaaatctttgtctgctaacctt-aaactcatca |
11890752 |
T |
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| Q |
216 |
aatcctccttggttttcggacccgacattccacttctcaacctcagtgccaggtaactaactaactaactaaccaacaaccaatcatagtttattg |
311 |
Q |
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| T |
11890751 |
aatcctcctcggttttcggacccgacattccacttctcaacctcagtgccaggtaactaactaactaactaaccaataaccaatcatagtttattg |
11890656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 11903294 - 11903000
Alignment:
| Q |
16 |
atggttacaagtccaagaactaaaaccagaaacattctactacaaatactagctttctgtttcaatgtttttgtcatcttatcccaaactgttgcagatt |
115 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11903294 |
atggttacaagtccaagaactaaaaccagcaacattctactaccactactagctttctgtttcaatgtttttgtcatcttatcccaaactgttgcagatt |
11903195 |
T |
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| Q |
116 |
caccatcaaaagaaacacaagttggttatggctacacaatcataagtgtaaaaagtgatccaacaggaaaatctttgtctgctaaccttaaaactcatca |
215 |
Q |
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| T |
11903194 |
caccatcaaaagaaacacaagttggttatggctacacaatcataagtgtaaaaagtgatccaacaggaaaatctttgtctgctaacctt-aaactcatca |
11903096 |
T |
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| Q |
216 |
aatcctccttggttttcggacccgacattccacttctcaacctcagtgccaggtaactaactaactaactaaccaacaaccaatcatagtttattg |
311 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11903095 |
aatcctcctcggttttcggacccgacattccacttctcaacctcagtgccaggtaactaactaactaactaaccaataaccaatcatagtttattg |
11903000 |
T |
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