View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8073_low_5 (Length: 232)
Name: NF8073_low_5
Description: NF8073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8073_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 21 - 204
Target Start/End: Original strand, 32267975 - 32268158
Alignment:
| Q |
21 |
tcatcattcagaaaaacaacattttgaagatccaagtgttggaaatgttgacacttggatagaaaagaaaagattccagaatagctatagccggtgcaat |
120 |
Q |
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||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
32267975 |
tcatctttcagaaaaacagcattttgaagatccaagtgttggaaatgttgacacttggatagtaaagaaaggattccagaatagctatagccggtgcaat |
32268074 |
T |
|
| Q |
121 |
cttgaagaacacgcctcgtcataggaagaccttcaaatgaaatataggagagcaactcatctgagatattcaaagataacaaat |
204 |
Q |
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| T |
32268075 |
cttggagaacaagcctcgtcaaaggaagacattggtatgcaatagaggagagcaactcatctgagatattcaaagataacaaat |
32268158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 41901138 - 41900940
Alignment:
| Q |
17 |
atgttcatcattcagaaaaacaacattttgaagatccaagtgttggaaatgttgacacttggatagaaaagaaaagattccagaatagctatagccggtg |
116 |
Q |
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||||||||| || ||||||||| |||||| ||||||||| |||| ||||||||||||||||| || ||| ||| ||||||||||| ||||| |||||| |
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| T |
41901138 |
atgttcatctttgagaaaaacagcattttcaagatccaaatgttttaaatgttgacacttggacagtaaacaaataattccagaataactataaccggtg |
41901039 |
T |
|
| Q |
117 |
caatcttgaagaacacgcctcgtcataggaagaccttcaaatgaaatataggagagcaactcatctgagatattcaaagataacaaatgaagagaagtt |
215 |
Q |
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|||| ||| |||||| |||| |||| ||| ||||||| | || |||| || ||| ||| ||||||||||||| |||| || |||| |||||||||| |
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| T |
41901038 |
caattttggagaacaagcctagtcaaaggtagaccttggattgcaatagagatgagaaacacatctgagatattggaagacaataaatcaagagaagtt |
41900940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 41889154 - 41888954
Alignment:
| Q |
17 |
atgttcatcattcagaaaaacaacattttgaagatccaagtgttggaaatgttgacacttggatagaaaagaaaagattccagaatagctatagccggtg |
116 |
Q |
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||||| || |||||||||||||| ||||||||||||||| |||||| ||||| |||||||||||| ||| |||||||||||| ||| ||| |||||||| |
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| T |
41889154 |
atgtttatgattcagaaaaacaatattttgaagatccaaaagttggatatgttcacacttggatagtaaacaaaagattccagcataactaaagccggtg |
41889055 |
T |
|
| Q |
117 |
caatctt----gaagaacacgcctcgtcataggaagaccttcaaatgaaatataggagagcaactcatctgagatattcaaagataacaaatgaagagaa |
212 |
Q |
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|||| || | ||||| | ||| |||| | ||| ||||| | || |||| |||| |||| |||||| |||||||||||||| ||||||| |||| || |
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| T |
41889054 |
caattttgtagggagaac-cacctagtcaaaagaaaaccttgcattgcaatagaggaaagcatctcatcggagatattcaaagaaaacaaatcaagacaa |
41888956 |
T |
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| Q |
213 |
gt |
214 |
Q |
| |
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|| |
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| T |
41888955 |
gt |
41888954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 23 - 194
Target Start/End: Complemental strand, 51764043 - 51763872
Alignment:
| Q |
23 |
atcattcagaaaaacaacattttgaagatccaagtgttggaaatgttgacacttggatagaaaagaaaagattccagaatagctatagccggtgcaatct |
122 |
Q |
| |
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||||||||||||| || ||| |||||||||||| |||| ||| ||||||| ||||||| ||| ||| |||||||| ||| |||||||| |||||| | |
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| T |
51764043 |
atcattcagaaaaccagcatcttgaagatccaaatgtttcaaacgttgacagttggataccaaacaaatgattccagcataactatagcccgtgcaaatt |
51763944 |
T |
|
| Q |
123 |
tgaagaacacgcctcgtcataggaagaccttcaaatgaaatataggagagcaactcatctgagatattcaaa |
194 |
Q |
| |
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||||| ||| |||| ||| | |||||||||| || ||| || ||||||||||||| ||||| |||||| |
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| T |
51763943 |
tgaaggacaagccttttcaaaagaagaccttcccttgcaatcgagtagagcaactcatcagagattttcaaa |
51763872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 169
Target Start/End: Complemental strand, 3438228 - 3438101
Alignment:
| Q |
42 |
ttttgaagatccaagtgttggaaatgttgacacttggatagaaaagaaaagattccagaatagctatagccggtgcaatcttgaagaacacgcctcgtca |
141 |
Q |
| |
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|||||||||||||| ||||| | | |||||||||||||| | |||||||||| ||| ||| |||||||||||||||| || || ||| |||| ||| |
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| T |
3438228 |
ttttgaagatccaaatgttgtatacattgacacttggataacagagaaaagatttcagcataactatagccggtgcaattgtggaggacaagccttctca |
3438129 |
T |
|
| Q |
142 |
taggaagaccttcaaatgaaatatagga |
169 |
Q |
| |
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|||||||||| ||| || |||| |||| |
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| T |
3438128 |
aaggaagacctccaattgcaatagagga |
3438101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 547406 - 547508
Alignment:
| Q |
11 |
aagaatatgttcatcattcagaaaaacaacattttgaagatccaagtgttggaaatgttgacacttggatagaaaagaaaagattccagaatagctatag |
110 |
Q |
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||||| ||||| || | ||| ||||||| ||||||||||||| || ||||||| |||||| |||||||| | |||| || | ||||||| ||| |||||| |
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| T |
547406 |
aagaacatgttgattagtcaaaaaaacagcattttgaagatctaaatgttggatatgttggcacttggacaaaaaacaagatattccagcataactatag |
547505 |
T |
|
| Q |
111 |
ccg |
113 |
Q |
| |
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||| |
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|
| T |
547506 |
ccg |
547508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 196
Target Start/End: Complemental strand, 21833929 - 21833808
Alignment:
| Q |
75 |
ttggatagaaaagaaaagattccagaatagctatagccggtgcaatcttgaagaacacgcctcgtcataggaagaccttcaaatgaaatataggagagca |
174 |
Q |
| |
|
||||||| ||| ||||||||||| ||| |||||||||||||| | | |||| ||| ||||||| | |||||||||||| || |||| || |||| | |
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| T |
21833929 |
ttggataacaaacaaaagattccatcataactatagccggtgcattttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta |
21833830 |
T |
|
| Q |
175 |
actcatctgagatattcaaaga |
196 |
Q |
| |
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||||||| |||||| |||||| |
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| T |
21833829 |
actcatccaagatatacaaaga |
21833808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 213
Target Start/End: Original strand, 27922680 - 27922783
Alignment:
| Q |
110 |
gccggtgcaatcttgaagaacacgcctcgtcataggaagaccttcaaatgaaatataggagagcaactcatctgagatattcaaagataacaaatgaaga |
209 |
Q |
| |
|
|||| |||||| ||| |||||| ||||||||| ||| |||| ||| | |||| |||||||||||||||| ||||||||| |||| || |||| |||| |
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| T |
27922680 |
gccgatgcaatattggagaacaagcctcgtcaaaggtagacgttcggtggcaatagaggagagcaactcatccgagatattcgaagacaataaatcaaga |
27922779 |
T |
|
| Q |
210 |
gaag |
213 |
Q |
| |
|
|||| |
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|
| T |
27922780 |
gaag |
27922783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 17627631 - 17627566
Alignment:
| Q |
45 |
tgaagatccaagtgttggaaatgttgacacttggatagaaaagaaaagattccagaatagctatag |
110 |
Q |
| |
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||||||||||| ||||||| | ||||||| |||||| |||||||| ||||||||||| |||||| |
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| T |
17627631 |
tgaagatccaaatgttggatacattgacacatggataacaaagaaaatattccagaataactatag |
17627566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 17352140 - 17352250
Alignment:
| Q |
17 |
atgttcatcattcagaaaaacaacattttgaagatccaagtgttggaaatgttgacacttggatagaaaagaaaagattccagaatagctatagccggtg |
116 |
Q |
| |
|
||||| |||| |||||||| || || ||||||||||| | ||||||| | |||| |||||||||| |||||||| |||||| ||| || ||||| ||| |
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|
| T |
17352140 |
atgttgatcactcagaaaaccagcagtttgaagatcctaatgttggatacgttggcacttggataacaaagaaaaagttccagcataactgtagccagtg |
17352239 |
T |
|
| Q |
117 |
caatcttgaag |
127 |
Q |
| |
|
||| |||||| |
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|
| T |
17352240 |
gaatattgaag |
17352250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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