View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8074_high_2 (Length: 497)
Name: NF8074_high_2
Description: NF8074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8074_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 11 - 360
Target Start/End: Original strand, 54708601 - 54708958
Alignment:
| Q |
11 |
agaagaatgacacatagtaaaacaaaacaaccttcttttttgagggttctaaacttctaaacatacaagataacttatgcttccaacaacaaattgtttg |
110 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54708601 |
agaagaatgacacatagtaaa-caaaacaaccttcttttttgagggttctaaacttctaaacatacaagataacttatgcttccaacaacaaattgtttg |
54708699 |
T |
|
| Q |
111 |
gttgcaatgaattctaaaggaaaagtaa---aaacagacaggaaatgaagcactgggcgg------gttcaacaatgccttaattcattttccgctataa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
54708700 |
gttgcaatgaattctaaaggaaaagtaagggaaacagacaggaaatgaagcactgggcggtttcaagttcaacaatgccttaattcattttccgctataa |
54708799 |
T |
|
| Q |
202 |
agtttctgttggtgtttgtgtttgcattcacacctattgtttgtatcgtttttagagctcatctcctccactggcactgttgtaaacgtttttcttccta |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54708800 |
agtttctgttggtgtttgtgtttgcattcacacctattgtttgtatcgtttttagagctcatctcctccactgacactgttgtaaacgtttttcttccta |
54708899 |
T |
|
| Q |
302 |
tttcttctctcactcaatatattctctcctctcctcataaacatatactcttctttttc |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54708900 |
tttcttctctcactcaatatattctctcctctcctcataaacatatactcttctttttc |
54708958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 396 - 492
Target Start/End: Original strand, 54709127 - 54709223
Alignment:
| Q |
396 |
ccttcctattttttggaaaataatattttaaacttatcctcataacaatattcaattgtcaatcaaggttattttagagtgtcaattcttctctctc |
492 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54709127 |
ccttcctatttttcggaaaataatattttaaacttatcctcataacaatattcaattgtcaatcaaggttattttagagtgtcaattcttctctctc |
54709223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University