View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8074_high_3 (Length: 452)
Name: NF8074_high_3
Description: NF8074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8074_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 43227135 - 43227571
Alignment:
| Q |
1 |
aagcaaaccttaacaaaatattcannnnnnnnnggtgaatgtcaaacaataactctaaacccctttgtccttaataataattttaaaaggaacaggttgt |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43227135 |
aagcaaaccttaacaaaatattcattttttattggtgaatgtcaaacaataagtctaaacccctttgtccttaataataattttaaaaggaacaggttgt |
43227234 |
T |
|
| Q |
101 |
tcgagacgttcttcctcacgttgttcgcgacgatggtcgatggagagacaaacaaatgacataatggagaaaaaacaactgatccactcaaatttccttc |
200 |
Q |
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|||||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43227235 |
tcgagacgttcttcttcgcgttgttcgcgacgatggtcaatggagagacaaacaaacgacataatggagaaaaaacaactgatccactcaaatttccttc |
43227334 |
T |
|
| Q |
201 |
tatcttcatgagagacaccaaagtacattggaacataagtaaaagccaacttaacaaagaaaaggaaaatgcttaacttgtacattcgactcatgaccat |
300 |
Q |
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| T |
43227335 |
tatcttcatgagagacaccaaagtacattggaacataagtaaaagccaacttgacaaagaaaaggaaaatgcttaacttatacattcgactcatgaccat |
43227434 |
T |
|
| Q |
301 |
tgatagatagtcacaacctgaaatcaaagaaagtagtaaaattatagcgaaatacatgaaccnnnnnnncacaaaatgcagatttaattcaagggagaaa |
400 |
Q |
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| T |
43227435 |
tgatagatagtcacaacctgaaatcaaagaaagtagtaaaattatagcgaaatacatgaaccaaaaaaacacaaaatgcagatttaattcaagggagaaa |
43227534 |
T |
|
| Q |
401 |
taaacatgtttataataagttgttaatgggatgttat |
437 |
Q |
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| T |
43227535 |
taaacatgtttctaatatgttgttaatgggatgttat |
43227571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 45 - 428
Target Start/End: Original strand, 43236687 - 43237082
Alignment:
| Q |
45 |
aacaataactctaaacccctttgtccttaataataattttaaaaggaacaggttgttcgagacgttcttcctcacgttgttcgcgacgatggtcgatgga |
144 |
Q |
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| T |
43236687 |
aacaataagtctaaacccttttgtccttaataataattttaaaaggaacgggttgttcaagacgttcttcttcgcgttcttcgcggcgataatcgatcca |
43236786 |
T |
|
| Q |
145 |
gagacaaacaaatgacataatggagaaaaaacaactgatccactcaaatttccttctatcttcatgagagacaccaaagtacattggaacataagtaaaa |
244 |
Q |
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| T |
43236787 |
tatacaaacaaatgatataatggagaaaaaacaacttgcccactcaaatatccttctatcttcgtaagggacaccgtagtactttgggacataagtaaaa |
43236886 |
T |
|
| Q |
245 |
gccaacttaacaaagaaaaggaaaatgcttaacttgtacattcgac---tcatgaccattgatagatagtcacaacctgaaatcaaagaaagtagtaaaa |
341 |
Q |
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| T |
43236887 |
gccaaattaatgacaaaaaataaaatgcttaacttgaacagtggacccaacaaggccattgatagatagtcacgacctaaattcaaggaaagtagtcaaa |
43236986 |
T |
|
| Q |
342 |
ttatagcgaaatacatgaacc---------nnnnnnncacaaaatgcagatttaattcaagggagaaataaacatgtttataataagttgttaatg |
428 |
Q |
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||| ||| |||||||| |||| ||||||||||||||||||||||||||| || ||||||||||||||||| | |||||||| |
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| T |
43236987 |
ttagagccaaatacataaaccaaaaaacaaaaaaaaacacaaaatgcagatttaattcaagggaaaattaaacatgtttataatatggtgttaatg |
43237082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 131 - 344
Target Start/End: Original strand, 43244951 - 43245165
Alignment:
| Q |
131 |
cgatggtcgatggagagacaaacaaatgacataatggagaaaaaaca-actgatccactcaaatttccttctatcttcatgagagacaccaaagtacatt |
229 |
Q |
| |
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||||||||||| | ||||||||| |||||||||||||||||| | ||| || ||||||||||||||| |||||| |||| ||||| |||||||| |
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| T |
43244951 |
cgatggtcgatccatagacaaacacccgacataatggagaaaaaaaagactaatgaactcaaatttccttcgatcttcttgaggaacaccgtagtacatt |
43245050 |
T |
|
| Q |
230 |
ggaacataagtaaaagccaacttaacaaagaaaaggaaaatgcttaacttgtacattcgactcatgaccattgatagatagtcacaacctgaaatcaaag |
329 |
Q |
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|||| |||||||||||||||||||| | ||||| ||||||||||||| | ||||||| || |||||||||||||||||| |||| || |||| |
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| T |
43245051 |
ggaatataagtaaaagccaacttaatgacaaaaagcaaaatgcttaactggagtattcgacccagagccattgatagatagtcactacctaaattcaagt |
43245150 |
T |
|
| Q |
330 |
aaagtagtaaaatta |
344 |
Q |
| |
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||||||||||||||| |
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| T |
43245151 |
aaagtagtaaaatta |
43245165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 43244853 - 43244901
Alignment:
| Q |
45 |
aacaataactctaaacccctttgtccttaataataattttaaaaggaac |
93 |
Q |
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|||||||| |||||| || |||||||||||||||||||||||||||||| |
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| T |
43244853 |
aacaataaatctaaaaccttttgtccttaataataattttaaaaggaac |
43244901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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