View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8074_high_5 (Length: 383)
Name: NF8074_high_5
Description: NF8074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8074_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 4 - 365
Target Start/End: Complemental strand, 12222670 - 12222309
Alignment:
| Q |
4 |
attattctaacacaaatgtatcttttcccatatatcaagaatttgttcactgcagggacagatacatcatctagcatcatagagtgggcacttgctgaaa |
103 |
Q |
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| T |
12222670 |
attattctaacacaaatgtatcttttcctatatatcaagaatttgttcactgcagggacagatacatcatctagcatcatagagtgggcacttgctgaaa |
12222571 |
T |
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| Q |
104 |
tgctaaaaagtccaaacatcttgataagggcacaaaaagagatgaatcaagtggtaggcagggaaagaatgctagttgaatctgacctagaaaaattacc |
203 |
Q |
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| T |
12222570 |
tgctaaaaagtccaaacatcttgataagggcacaaaaagagatgaatcaagtggtaggcagggaaagaatgctagttgaatctgacctagaaaaattacc |
12222471 |
T |
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| Q |
204 |
ataccttcaagcaatatgcaaggagacatatcgtttgcatccatctacaccccttagtgttccaagggtgtcaaataaagcatgccaaattaatggttac |
303 |
Q |
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| T |
12222470 |
ataccttcaagcaatatgcaaggagacatatcgtttgcatccatctacaccccttagtgttccaagggtgtcaaataaagcatgccaaattaatggttac |
12222371 |
T |
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| Q |
304 |
tacatccccaaaaatacaaggttcaatgttaacatatgggcaatagggagagacccaaatat |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12222370 |
tacatccccaaaaatacaaggttcaatgttaacatatgggcaatagggagagacccaaatat |
12222309 |
T |
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