View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8074_low_1 (Length: 498)
Name: NF8074_low_1
Description: NF8074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8074_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 9 - 485
Target Start/End: Original strand, 27939593 - 27940069
Alignment:
| Q |
9 |
cattattctccaaagcattaatttgtaacaaaccattatcccgcttttccattgaggacacttgttgtgaacctacattttcattttcatgttgtggccc |
108 |
Q |
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|||||||||||||||||||||||||| |||||||| |||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27939593 |
cattattctccaaagcattaatttgtgacaaaccactatctcgcttttccattgaagacacttgttgtggacctacattttcattttcatgttgtggccc |
27939692 |
T |
|
| Q |
109 |
attgtcgttaacattattacctcgttcaatgtttgatgacaacaattcttcctcagtattttgtcgttgaggaagaacaatatcatcagggttcacctta |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27939693 |
attgtcgttaacattattacctcgttcaatgtttgatgacaacaattcttcctcagtattttgtcgttgaggaagaacaatatcatcagggttcacctta |
27939792 |
T |
|
| Q |
209 |
tagcgacacagtgggcacgaggaatgttcatcaagccacatgtcaacacattccatgtggaaagcatgtttgcattttggcaataacctaagtacatcgg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27939793 |
tagcgacacagtgggcacgaggaatgttcatcaagccacatgtcaacacattccatgtggaaagcatgtttgcattttggcaataacctaagtacatcgg |
27939892 |
T |
|
| Q |
309 |
gatcctcaaacccattgagacaaactgcacattcaagtccannnnnnnngccactcaatgacccaaacttaaaaaccggcaatgattcaacaaccgcgcg |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27939893 |
gatcctcaaacccattgagacaaactgcacattcaagtccattttttttgccactcaatgacccaaacttaaaaaccggcaatgattccacaaccgcgcg |
27939992 |
T |
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| Q |
409 |
ttcgattccagagtttttcctcttatgcaaatttgattctccattgggattcgggttgctagcaacgggcatatctg |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27939993 |
ttcgattccagagtttttcctcttatgcaaatttgattctccattgggattcgggttgctagcaacgggcatatctg |
27940069 |
T |
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