View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8074_low_10 (Length: 213)
Name: NF8074_low_10
Description: NF8074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8074_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 38003352 - 38003505
Alignment:
| Q |
17 |
caaaagaattatcttgctcccctaaccatgcatcttgcaacacatttattttcctctcatccctcattcgctatcttaaacctcccttgaccacgacctc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38003352 |
caaaagaattatcttgctcccctaaccatgcatcttgcaacacatttattttcctctcatccctcattcgctatcttaaacctcccttgaccacgacctc |
38003451 |
T |
|
| Q |
117 |
gtgtgaagtgtaaatgctacccaaataaagcccggatcatgaccaagattgacc |
170 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38003452 |
gtgtgaagtgtgaatgctacccaaataaagctcggatcatgaccaagattgacc |
38003505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University