View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8074_low_4 (Length: 402)
Name: NF8074_low_4
Description: NF8074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8074_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 36693351 - 36692988
Alignment:
| Q |
18 |
catgtctactaatagtt-actagtatgaattatttttcaacaacaatatataaatccacactgaattaacatggccccactaaaatgacaaaaatattgt |
116 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36693351 |
catgtctactaatagtttactagtatgaattatttttcaacaacaatatataaatccacactgaattaacatggccccactaaaatgacaaaaatattgt |
36693252 |
T |
|
| Q |
117 |
ctaatttcttgtctgctacagcctacagtaccgtttgttaggcttaggagcatcttaattagtctaataaccacatgatattaatctatttgtgatctat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36693251 |
ctaatttcttgtctgctacagcctacagtaccgtttgttaggcttaggagcatcttaattagtctaataaccacatgatattaatctatttgtgatctat |
36693152 |
T |
|
| Q |
217 |
aacaactgacaagatgctcatgtataatataatataaactaactaatgtaacaacaatgataaatatacttattttattttgctacacac-ttcaacaac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
36693151 |
aacaactgacaagatgctcatgtataatataatataaactaattaatgtaacaacaatgataaatatacatattttattttgctacacacgttcaacaac |
36693052 |
T |
|
| Q |
316 |
gtctcattttctctttatctctatccttttatcacattatcaaattatcacgtttattacatca |
379 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||| |||| |
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| T |
36693051 |
gtctcattttctctttatctctattcttttatcatattatcaaattatcacgtctattatatca |
36692988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 36709452 - 36709089
Alignment:
| Q |
18 |
catgtctactaatagtt-actagtatgaattatttttcaacaacaatatataaatccacactgaattaacatggccccactaaaatgacaaaaatattgt |
116 |
Q |
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|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36709452 |
catgtctactaatagtttactagtatgaattatttttcaacaacaatatataaatccacactgaattaacatggccccactaaaatgacaaaaatattgt |
36709353 |
T |
|
| Q |
117 |
ctaatttcttgtctgctacagcctacagtaccgtttgttaggcttaggagcatcttaattagtctaataaccacatgatattaatctatttgtgatctat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36709352 |
ctaatttcttgtctgctacagcctacagtaccgtttgttaggcttaggagcatcttaattagtctaataaccacatgatattaatctatttgtgatctat |
36709253 |
T |
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| Q |
217 |
aacaactgacaagatgctcatgtataatataatataaactaactaatgtaacaacaatgataaatatacttattttattttgctacacac-ttcaacaac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
36709252 |
aacaactgacaagatgctcatgtataatataatataaactaattaatgtaacaacaatgataaatatacatattttattttgctacacacgttcaacaac |
36709153 |
T |
|
| Q |
316 |
gtctcattttctctttatctctatccttttatcacattatcaaattatcacgtttattacatca |
379 |
Q |
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|||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||| |||| |
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|
| T |
36709152 |
gtctcattttctctttatctctattcttttatcatattatcaaattatcacgtctattatatca |
36709089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 379
Target Start/End: Original strand, 9125008 - 9125070
Alignment:
| Q |
317 |
tctcattttctctttatctctatccttttatcacattatcaaattatcacgtttattacatca |
379 |
Q |
| |
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||||| || ||||| ||||||||| ||||||||||| ||||| |||||| |||||||||||| |
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| T |
9125008 |
tctcacttgctcttcatctctatctttttatcacatcatcaatatatcacatttattacatca |
9125070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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