View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8075_high_2 (Length: 226)

Name: NF8075_high_2
Description: NF8075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8075_high_2
NF8075_high_2
[»] chr2 (5 HSPs)
chr2 (19-226)||(34563174-34563379)
chr2 (4-80)||(39819075-39819151)
chr2 (4-65)||(12918545-12918606)
chr2 (19-80)||(7755363-7755424)
chr2 (171-220)||(34572004-34572053)
[»] chr8 (2 HSPs)
chr8 (19-80)||(31470771-31470832)
chr8 (19-80)||(7931594-7931655)
[»] chr6 (3 HSPs)
chr6 (4-80)||(28581802-28581877)
chr6 (19-80)||(369489-369550)
chr6 (19-80)||(16193757-16193818)
[»] chr1 (7 HSPs)
chr1 (4-80)||(10449518-10449593)
chr1 (4-80)||(9379830-9379906)
chr1 (4-80)||(9884853-9884929)
chr1 (4-72)||(6539637-6539705)
chr1 (20-79)||(15928145-15928204)
chr1 (11-81)||(44938863-44938933)
chr1 (19-80)||(50754751-50754812)
[»] scaffold0343 (1 HSPs)
scaffold0343 (19-76)||(12281-12338)
[»] chr5 (5 HSPs)
chr5 (19-80)||(42772035-42772096)
chr5 (4-77)||(1839983-1840056)
chr5 (4-65)||(29385370-29385431)
chr5 (6-72)||(7137655-7137721)
chr5 (19-80)||(9177915-9177976)
[»] chr4 (9 HSPs)
chr4 (4-69)||(32008317-32008382)
chr4 (11-80)||(53937919-53937988)
chr4 (4-80)||(31846861-31846937)
chr4 (19-80)||(6607465-6607526)
chr4 (19-80)||(31012154-31012215)
chr4 (19-80)||(32224311-32224372)
chr4 (19-61)||(54223580-54223622)
chr4 (11-48)||(44023039-44023076)
chr4 (19-59)||(9712943-9712983)
[»] chr3 (6 HSPs)
chr3 (19-80)||(22893969-22894030)
chr3 (4-61)||(29081611-29081668)
chr3 (19-80)||(31342034-31342095)
chr3 (19-80)||(11512414-11512475)
chr3 (3-65)||(20286915-20286977)
chr3 (20-80)||(25786950-25787010)
[»] chr7 (5 HSPs)
chr7 (30-78)||(25099321-25099369)
chr7 (19-80)||(17272726-17272787)
chr7 (21-80)||(7211968-7212027)
chr7 (19-71)||(7211887-7211939)
chr7 (36-80)||(29407563-29407607)
[»] scaffold0001 (1 HSPs)
scaffold0001 (7-80)||(507731-507804)


Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 34563379 - 34563174
Alignment:
Q  19 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttttatactcattttcaaattgcaccggtcatgctacaaaat 118  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34563379 gtgacattgaccaacttcaatgtcacaagtatctttcttcattttctttcacaatattttttatactcattttcaaattgcaccggtcatgctacaaaat 34563280  T
Q  119 ggtagattcaatttaaatatctaaaagaaacatatcagccaccttccttggcaatccacgctgaagcacaaaaccgttgaaacatgcaacttccacgtac 218  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34563279 ggtagattcaatttaaatatctaaaag--acatatcagccaccttccttggcaatccacgttgaagcacaaaaccgttgaaacatgcaacttccacgtac 34563182  T
Q  219 actgtctc 226  Q
    ||||||||    
T  34563181 actgtctc 34563174  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 39819075 - 39819151
Alignment:
Q  4 tggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 80  Q
    |||||| ||||||| ||||||||| |||||| |||||||||| ||  ||||||||||||||| |||||| |||||||    
T  39819075 tggttggtgacattggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttt 39819151  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 12918545 - 12918606
Alignment:
Q  4 tggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttct 65  Q
    |||||||||||||| ||||||||| |||||| |||||||||| ||  |||| ||||||||||    
T  12918545 tggttgatgacattggtgacattggccaaccacaatgtcacatgtggcttttttctttttct 12918606  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 7755363 - 7755424
Alignment:
Q  19 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 80  Q
    ||||||||| |||||| |||||||||||||  |||| |||||||||| | |||| |||||||    
T  7755363 gtgacattggccaaccacaatgtcacaagtggcttttttctttttctttaacaagatttttt 7755424  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 34572053 - 34572004
Alignment:
Q  171 aatccacgctgaagcacaaaaccgttgaaacatgcaacttccacgtacac 220  Q
    |||||||| |||| || ||||||||| || ||||||||||||||||||||    
T  34572053 aatccacgttgaaacataaaaccgttaaagcatgcaacttccacgtacac 34572004  T

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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 31470771 - 31470832
Alignment:
Q  19 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 80  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||    
T  31470771 gtgacattgaccaaccacaatgtcacaagtatcattcttctttttctttcacaatatttttt 31470832  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 7931655 - 7931594
Alignment:
Q  19 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 80  Q
    ||||||||| | |||| ||||||||||| | |||||||||||| ||| ||| ||||||||||    
T  7931655 gtgacattggcaaaccacaatgtcacaaatgtctttcttctttctctttcataatatttttt 7931594  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 28581877 - 28581802
Alignment:
Q  4 tggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 80  Q
    |||||||||||||| |||| |||||||||| ||||| |||||||| |||||||||||| ||| ||||||||||||||    
T  28581877 tggttgatgacatt-gtgatattgaccaacatcaatatcacaagtgtctttcttctttctctttcacaatatttttt 28581802  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 369550 - 369489
Alignment:
Q  19 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 80  Q
    |||||||||||||||| ||||||||||||| |||||||||||| ||| ||||| | ||||||    
T  369550 gtgacattgaccaaccacaatgtcacaagtgtctttcttctttctctttcacagtttttttt 369489  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 16193757 - 16193818
Alignment:
Q  19 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 80  Q
    |||| |||| |||| | ||||||||||||| |||||||||||| ||  ||||||||||||||    
T  16193757 gtgatattggccaatcacaatgtcacaagtgtctttcttctttctccttcacaatatttttt 16193818  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 10449593 - 10449518
Alignment:
Q  4 tggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 80  Q
    |||||| ||||||| |||||||||  ||||| ||||||||||| |||||||||||||| ||| ||||||||||||||    
T  10449593 tggttggtgacatt-gtgacattggtcaaccacaatgtcacaaatatctttcttctttctctttcacaatatttttt 10449518  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 9379830 - 9379906
Alignment:
Q  4 tggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 80  Q
    |||||| ||||||| |||| |||| |||||| |||||||||| ||  ||||||||||||||| |||||| |||||||    
T  9379830 tggttggtgacattggtgatattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttt 9379906  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 9884853 - 9884929
Alignment:
Q  4 tggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 80  Q
    |||||| ||||||| |||||||||  ||||| |||||||||| ||  ||||||||||||||| |||||| |||||||    
T  9884853 tggttggtgacattggtgacattggtcaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttt 9884929  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 6539705 - 6539637
Alignment:
Q  4 tggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaa 72  Q
    |||||||||| ||| |||||||||  ||||| |||||||||| ||  ||||||||||||||| ||||||    
T  6539705 tggttgatgatattggtgacattggtcaaccacaatgtcacatgtgactttcttctttttctttcacaa 6539637  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 15928204 - 15928145
Alignment:
Q  20 tgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttt 79  Q
    |||||||| |||||| |||||||||| ||  ||||||||||||||| |||||| ||||||    
T  15928204 tgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagattttt 15928145  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 44938933 - 44938863
Alignment:
Q  11 tgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttta 81  Q
    |||||||||||||||||| ||||| |||||  ||||||  ||||||||||| ||| ||||||  |||||||    
T  44938933 tgacattagtgacattgaacaaccacaatggtacaagtggctttcttctttctctttcacaaagtttttta 44938863  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 50754751 - 50754812
Alignment:
Q  19 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 80  Q
    ||||||||| |||||| |||||||||| ||  ||||||||||||||| | |||| |||||||    
T  50754751 gtgacattggccaaccacaatgtcacatgtggctttcttctttttcttttacaagatttttt 50754812  T

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Target: scaffold0343 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 12338 - 12281
Alignment:
Q  19 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatt 76  Q
    |||||||||||||||| ||||||||||||| || ||||||||| ||| ||||||||||    
T  12338 gtgacattgaccaaccacaatgtcacaagtgtccttcttctttctctttcacaatatt 12281  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 42772096 - 42772035
Alignment:
Q  19 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 80  Q
    |||||||||||||||| ||||||||||||| |||||||||||| | | ||| ||||||||||    
T  42772096 gtgacattgaccaaccacaatgtcacaagtgtctttcttctttctttttcataatatttttt 42772035  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 1839983 - 1840056
Alignment:
Q  4 tggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattt 77  Q
    |||||| |||||||  |||||||| |||||| |||||||||| ||  ||||||||||||||| |||||| ||||    
T  1839983 tggttggtgacattgatgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagattt 1840056  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 29385431 - 29385370
Alignment:
Q  4 tggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttct 65  Q
    |||||| ||||||| ||||||||| |||||| |||||||||| ||  |||||||||||||||    
T  29385431 tggttggtgacattggtgacattggccaaccacaatgtcacatgtggctttcttctttttct 29385370  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 7137655 - 7137721
Alignment:
Q  6 gttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaa 72  Q
    |||| ||| ||| |||||||||||||||| |||||||||||||  |||||||| || ||| ||||||    
T  7137655 gttggtgaaattggtgacattgaccaaccacaatgtcacaagtgactttcttcattctctttcacaa 7137721  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 9177976 - 9177915
Alignment:
Q  19 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 80  Q
    |||| |||| |||||| |||| ||||| ||  ||||||||||||||| ||||||||||||||    
T  9177976 gtgatattggccaaccacaatatcacatgtgactttcttctttttctttcacaatatttttt 9177915  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 32008382 - 32008317
Alignment:
Q  4 tggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctca 69  Q
    |||||| |||||||||||| |||||||||||  ||||| |||||| |||||||||||| |||||||    
T  32008382 tggttggtgacattagtgatattgaccaaccaaaatgttacaagtgtctttcttctttctctctca 32008317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 53937919 - 53937988
Alignment:
Q  11 tgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 80  Q
    |||||||||||| ||||||||||| |||||||||||||| ||||||| | | ||| | ||||||||||||    
T  53937919 tgacattagtgatattgaccaaccacaatgtcacaagtaactttcttatgtctcttttacaatatttttt 53937988  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 31846937 - 31846861
Alignment:
Q  4 tggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 80  Q
    |||||| ||||||| |||| |||| |||||| |||||||||| ||  ||||||||||||||| |||||| |||||||    
T  31846937 tggttggtgacattggtgatattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttt 31846861  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 6607526 - 6607465
Alignment:
Q  19 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 80  Q
    ||||||||||||||||  ||||||||| ||  ||||||||||||||| |||||| |||||||    
T  6607526 gtgacattgaccaaccataatgtcacatgtggctttcttctttttctttcacaagatttttt 6607465  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 31012154 - 31012215
Alignment:
Q  19 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 80  Q
    |||||||||||||||| |||||||||| ||  |||| |||||||||| ||||||| ||||||    
T  31012154 gtgacattgaccaaccacaatgtcacatgtgacttttttctttttctttcacaatttttttt 31012215  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 32224311 - 32224372
Alignment:
Q  19 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 80  Q
    |||||||||| ||||  |||||||||||||||||||||||||| | | | ||||||||||||    
T  32224311 gtgacattgatcaactacaatgtcacaagtatctttcttctttctttttgacaatatttttt 32224372  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 54223580 - 54223622
Alignment:
Q  19 gtgacattgaccaacctcaatgtcacaagtatctttcttcttt 61  Q
    |||||||||||||||| ||||||||||| | ||||||||||||    
T  54223580 gtgacattgaccaaccacaatgtcacaaatgtctttcttcttt 54223622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 44023076 - 44023039
Alignment:
Q  11 tgacattagtgacattgaccaacctcaatgtcacaagt 48  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  44023076 tgacattagtgacattgaccaaccacaatgttacaagt 44023039  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 9712983 - 9712943
Alignment:
Q  19 gtgacattgaccaacctcaatgtcacaagtatctttcttct 59  Q
    |||||||||||||||| |||||||||||||  |||||||||    
T  9712983 gtgacattgaccaaccacaatgtcacaagtggctttcttct 9712943  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 22894030 - 22893969
Alignment:
Q  19 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 80  Q
    |||||||||||||||| |||||||||||||  ||||||||||||||| | |||| |||||||    
T  22894030 gtgacattgaccaaccacaatgtcacaagtgactttcttctttttctttaacaagatttttt 22893969  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 29081611 - 29081668
Alignment:
Q  4 tggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttcttt 61  Q
    |||||| ||||||  |||||||||||||||| |||||||||||||| |||||||||||    
T  29081611 tggttggtgacatcggtgacattgaccaaccacaatgtcacaagtagctttcttcttt 29081668  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 31342034 - 31342095
Alignment:
Q  19 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 80  Q
    ||||||||| |||||| |||||||||| ||| ||||||||||||||| |||||| |||||||    
T  31342034 gtgacattggccaaccacaatgtcacatgtagctttcttctttttctttcacaagatttttt 31342095  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 11512414 - 11512475
Alignment:
Q  19 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 80  Q
    ||||||||| |||||| |||||||||| ||  ||||||||||||||| |||||| |||||||    
T  11512414 gtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttt 11512475  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 20286915 - 20286977
Alignment:
Q  3 atggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttct 65  Q
    ||||||| |||||||  |||||||| |||||| |||||||||| ||  |||||||||||||||    
T  20286915 atggttggtgacattgatgacattggccaaccacaatgtcacatgtggctttcttctttttct 20286977  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 25786950 - 25787010
Alignment:
Q  20 tgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 80  Q
    ||||||||| ||| |  |||||||||||| |||||| ||||| ||| ||||||||||||||    
T  25786950 tgacattgatcaatcataatgtcacaagtgtctttcatctttctctttcacaatatttttt 25787010  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 25099369 - 25099321
Alignment:
Q  30 caacctcaatgtcacaagtatctttcttctttttctctcacaatatttt 78  Q
    ||||| ||||||||||||| |||||||||||||||| ||||||||||||    
T  25099369 caaccacaatgtcacaagtgtctttcttctttttctttcacaatatttt 25099321  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 17272726 - 17272787
Alignment:
Q  19 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 80  Q
    ||||||||| |||||| |||||||||| ||  ||||||||||||||| |||||| |||||||    
T  17272726 gtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttt 17272787  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 7212027 - 7211968
Alignment:
Q  21 gacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 80  Q
    ||||||| |||||| |||||||||| ||  ||||||||||||||| |||||| |||||||    
T  7212027 gacattggccaaccacaatgtcacatgtgactttcttctttttctttcacaagatttttt 7211968  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 7211887 - 7211939
Alignment:
Q  19 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcaca 71  Q
    ||||||||| |||||| |||||||||| ||  ||||||||||||||| |||||    
T  7211887 gtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcaca 7211939  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 29407607 - 29407563
Alignment:
Q  36 caatgtcacaagtatctttcttctttttctctcacaatatttttt 80  Q
    ||||||||||| | |||||||||||| ||| ||||||||||||||    
T  29407607 caatgtcacaactgtctttcttctttctctttcacaatatttttt 29407563  T

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Target: scaffold0001 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 507731 - 507804
Alignment:
Q  7 ttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 80  Q
    ||||||||||| |||||||||||||| | |||| | ||||||   |||||||||| ||| |||||| |||||||    
T  507731 ttgatgacattggtgacattgaccaatcacaatattacaagtggatttcttctttctctttcacaagatttttt 507804  T

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